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Abstract
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Fluorinated
carbohydrates have found many applications in the glycosciences.
Typically, these contain fluorination at a single position. There
are not many applications involving polyfluorinated carbohydrates,
here defined as monosaccharides in which more than one carbon has
at least one fluorine substituent directly attached to it, with the
notable exception of their use as mechanism-based inhibitors. The
increasing attention to carbohydrate physical properties, especially
around lipophilicity, has resulted in a surge of interest for this
class of compounds. This review covers the considerable body of work
toward the synthesis of polyfluorinated hexoses, pentoses, ketosugars,
and aminosugars including sialic acids and nucleosides. An overview
of the current state of the art of their glycosidation is also provided.
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Affiliation(s)
- Kler Huonnic
- School of Chemistry, University of Southampton, Highfield, Southampton, SO17 1BJ, U.K
| | - Bruno Linclau
- School of Chemistry, University of Southampton, Highfield, Southampton, SO17 1BJ, U.K.,Department of Organic and Macromolecular Chemistry, Ghent University, Campus Sterre, Krijgslaan 281-S4, Ghent, 9000, Belgium
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2
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Linclau B, Ardá A, Reichardt NC, Sollogoub M, Unione L, Vincent SP, Jiménez-Barbero J. Fluorinated carbohydrates as chemical probes for molecular recognition studies. Current status and perspectives. Chem Soc Rev 2021; 49:3863-3888. [PMID: 32520059 DOI: 10.1039/c9cs00099b] [Citation(s) in RCA: 63] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
This review provides an extensive summary of the effects of carbohydrate fluorination with regard to changes in physical, chemical and biological properties with respect to regular saccharides. The specific structural, conformational, stability, reactivity and interaction features of fluorinated sugars are described, as well as their applications as probes and in chemical biology.
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Affiliation(s)
- Bruno Linclau
- School of Chemistry, University of Southampton, Highfield, Southampton SO171BJ, UK
| | - Ana Ardá
- CIC bioGUNE, Basque Research and Technology Alliance (BRTA), 48160 Derio, Spain.
| | | | - Matthieu Sollogoub
- Sorbonne Université, CNRS, Institut Parisien de Chimie Moléculaire, UMR 8232, 4 place Jussieu, 75005 Paris, France
| | - Luca Unione
- Department of Chemical Biology and Drug Discovery, Utrecht Institute for Pharmaceutical Science, Utrecht University, Universiteitsweg 99, 3584 CG, Utrecht, The Netherlands
| | - Stéphane P Vincent
- Department of Chemistry, Laboratory of Bio-organic Chemistry, University of Namur (UNamur), B-5000 Namur, Belgium
| | - Jesús Jiménez-Barbero
- CIC bioGUNE, Basque Research and Technology Alliance (BRTA), 48160 Derio, Spain. and Ikerbasque, Basque Foundation for Science, Maria Diaz de Haro 3, 48013 Bilbao, Spain and Department of Organic Chemistry II, Faculty of Science and Technology, UPV/EHU, 48940 Leioa, Spain
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3
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St-Gelais J, Côté É, Lainé D, Johnson PA, Giguère D. Addressing the Structural Complexity of Fluorinated Glucose Analogues: Insight into Lipophilicities and Solvation Effects. Chemistry 2020; 26:13499-13506. [PMID: 32652740 DOI: 10.1002/chem.202002825] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2020] [Indexed: 01/24/2023]
Abstract
In this work, we synthesized all mono-, di-, and trifluorinated glucopyranose analogues at positions C-2, C-3, C-4, and C-6. This systematic investigation allowed us to perform direct comparison of 19 F resonances of fluorinated glucose analogues and also to determine their lipophilicities. Compounds with a fluorine atom at C-6 are usually the most hydrophilic, whereas those with vicinal polyfluorinated motifs are the most lipophilic. Finally, the solvation energies of fluorinated glucose analogues were assessed for the first time by using density functional theory. This method allowed the log P prediction of fluoroglucose analogues, which was comparable to the C log P values obtained from various web-based programs.
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Affiliation(s)
- Jacob St-Gelais
- Département de Chimie, Université Laval, 1045 av. De la Médecine, Québec City, QC, G1V 0A6, Canada
| | - Émilie Côté
- Département de Chimie, Université Laval, 1045 av. De la Médecine, Québec City, QC, G1V 0A6, Canada
| | - Danny Lainé
- Département de Chimie, Université Laval, 1045 av. De la Médecine, Québec City, QC, G1V 0A6, Canada
| | - Paul A Johnson
- Département de Chimie, Université Laval, 1045 av. De la Médecine, Québec City, QC, G1V 0A6, Canada
| | - Denis Giguère
- Département de Chimie, Université Laval, 1045 av. De la Médecine, Québec City, QC, G1V 0A6, Canada
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4
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Denavit V, St‐Gelais J, Tremblay T, Giguère D. Exploring the Chemistry of Non‐sticky Sugars: Synthesis of Polyfluorinated Carbohydrate Analogues of
d
‐Allopyranose. Chemistry 2019; 25:9272-9279. [DOI: 10.1002/chem.201901346] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2019] [Revised: 05/16/2019] [Indexed: 01/07/2023]
Affiliation(s)
- Vincent Denavit
- Département de Chimie, PROTEO, RQRMUniversité Laval 1045 Avenue de la Médecine Quebec City QC G1V 0A6 Canada
| | - Jacob St‐Gelais
- Département de Chimie, PROTEO, RQRMUniversité Laval 1045 Avenue de la Médecine Quebec City QC G1V 0A6 Canada
| | - Thomas Tremblay
- Département de Chimie, PROTEO, RQRMUniversité Laval 1045 Avenue de la Médecine Quebec City QC G1V 0A6 Canada
| | - Denis Giguère
- Département de Chimie, PROTEO, RQRMUniversité Laval 1045 Avenue de la Médecine Quebec City QC G1V 0A6 Canada
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5
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St-Gelais J, Bouchard M, Denavit V, Giguère D. Synthesis and Lipophilicity of Trifluorinated Analogues of Glucose. J Org Chem 2019; 84:8509-8522. [DOI: 10.1021/acs.joc.9b00795] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Jacob St-Gelais
- Département de Chimie, Université Laval, PROTEO, RQRM, 1045 Avenue De la Médecine, Québec City, Quebec, Canada G1V 0A6
| | - Megan Bouchard
- Département de Chimie, Université Laval, PROTEO, RQRM, 1045 Avenue De la Médecine, Québec City, Quebec, Canada G1V 0A6
| | - Vincent Denavit
- Département de Chimie, Université Laval, PROTEO, RQRM, 1045 Avenue De la Médecine, Québec City, Quebec, Canada G1V 0A6
| | - Denis Giguère
- Département de Chimie, Université Laval, PROTEO, RQRM, 1045 Avenue De la Médecine, Québec City, Quebec, Canada G1V 0A6
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Quiquempoix L, Wang Z, Graton J, Latchem PG, Light M, Le Questel JY, Linclau B. Synthesis of 2,3,4-Trideoxy-2,3,4-trifluoroglucose. J Org Chem 2019; 84:5899-5906. [DOI: 10.1021/acs.joc.9b00310] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Lucas Quiquempoix
- School of Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, United Kingdom
| | - Zhong Wang
- School of Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, United Kingdom
| | - Jérôme Graton
- CEISAM UMR CNRS 6230, Faculté des Sciences et des Techniques, Université de Nantes 2, rue de la Houssinière−BP 92208, 44322 Nantes Cedex 3, France
| | - Peter G. Latchem
- School of Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, United Kingdom
| | - Mark Light
- School of Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, United Kingdom
| | - Jean-Yves Le Questel
- CEISAM UMR CNRS 6230, Faculté des Sciences et des Techniques, Université de Nantes 2, rue de la Houssinière−BP 92208, 44322 Nantes Cedex 3, France
| | - Bruno Linclau
- School of Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, United Kingdom
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Uhrig ML, Lantaño B, Postigo A. Synthetic strategies for fluorination of carbohydrates. Org Biomol Chem 2019; 17:5173-5189. [DOI: 10.1039/c9ob00405j] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Different synthetic strategies for accomplishing regio- and stereoselective fluorinations of carbohydrate scaffolds are discussed in light of the biological implications arising from such substitutions.
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Affiliation(s)
- María Laura Uhrig
- Universidad de Buenos Aires
- Facultad de Ciencias Exactas y Naturales
- Departamento de Química Orgánica
- C1428EG Buenos Aires
- Argentina
| | - Beatriz Lantaño
- Departmento de Química Orgánica
- Facultad de Farmacia y Bioquímica
- Universidad de Buenos Aires
- Junin 954 CP1113-Buenos Aires
- Argentina
| | - Al Postigo
- Departmento de Química Orgánica
- Facultad de Farmacia y Bioquímica
- Universidad de Buenos Aires
- Junin 954 CP1113-Buenos Aires
- Argentina
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A Chiron approach towards the stereoselective synthesis of polyfluorinated carbohydrates. Nat Commun 2018; 9:4721. [PMID: 30413697 PMCID: PMC6226540 DOI: 10.1038/s41467-018-06901-y] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2018] [Accepted: 09/26/2018] [Indexed: 12/04/2022] Open
Abstract
The replacement of hydroxyl groups by fluorine atoms on hexopyranose scaffolds may allow access to the discovery of new chemical entities possessing unique physical, chemical and ultimately even biological properties. The prospect of significant effects generated by such multiple and controlled substitutions encouraged us to develop diverse synthetic routes towards the stereoselective synthesis of polyfluorinated hexopyranoses, six of which are unprecedented. Hence, we report the synthesis of heavily fluorinated galactose, glucose, mannose, talose, allose, fucose, and galacturonic acid methyl ester using a Chiron approach from inexpensive levoglucosan. Structural analysis of single-crystal X-ray diffractions and NMR studies confirm the conservation of favored 4C1 conformation for fluorinated carbohydrate analogs, while a slightly distorted conformation due to repulsive 1,3-diaxial F···F interaction is observed for the trifluorinated talose derivative. Finally, the relative stereochemistry of multi-vicinal fluorine atoms has a strong effect on the lipophilicities (logP). Polyfluorinated hexopyranoses display unique physical, chemical and biological properties, however their stereoselective synthesis is highly challenging. Here, the authors report a synthetic approach based on the chemical manipulation of inexpensive levoglucosan to obtain heavily fluorinated monosaccharides stereoselectively.
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Davies SG, Fletcher AM, Frost AB, Kennedy MS, Roberts PM, Thomson JE. Trading N and O. Part 3: Synthesis of 1,2,3,4-tetrahydroisoquinolines from α-hydroxy-β-amino esters. Tetrahedron 2016. [DOI: 10.1016/j.tet.2016.03.008] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Wang BL, Zhang LY, Zhan YZ, Zhang Y, Zhang X, Wang LZ, Li ZM. Synthesis and biological activities of novel 1,2,4-triazole thiones and bis(1,2,4-triazole thiones) containing phenylpyrazole and piperazine moieties. J Fluor Chem 2016. [DOI: 10.1016/j.jfluchem.2016.02.004] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Linclau B, Wang Z, Compain G, Paumelle V, Fontenelle CQ, Wells N, Weymouth-Wilson A. Investigating the Influence of (Deoxy)fluorination on the Lipophilicity of Non-UV-Active Fluorinated Alkanols and Carbohydrates by a New log P Determination Method. Angew Chem Int Ed Engl 2016; 55:674-8. [PMID: 26592706 PMCID: PMC4832822 DOI: 10.1002/anie.201509460] [Citation(s) in RCA: 101] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2015] [Indexed: 11/20/2022]
Abstract
Property tuning by fluorination is very effective for a number of purposes, and currently increasingly investigated for aliphatic compounds. An important application is lipophilicity (log P) modulation. However, the determination of log P is cumbersome for non-UV-active compounds. A new variation of the shake-flask log P determination method is presented, enabling the measurement of log P for fluorinated compounds with or without UV activity regardless of whether they are hydrophilic or lipophilic. No calibration curves or measurements of compound masses/aliquot volumes are required. With this method, the influence of fluorination on the lipophilicity of fluorinated aliphatic alcohols was determined, and the log P values of fluorinated carbohydrates were measured. Interesting trends and changes, for example, for the dependence on relative stereochemistry, are reported.
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Affiliation(s)
- Bruno Linclau
- Chemistry, University of Southampton, Highfield, Southampton, SO17 1BJ (UK).
| | - Zhong Wang
- Chemistry, University of Southampton, Highfield, Southampton, SO17 1BJ (UK)
| | - Guillaume Compain
- Chemistry, University of Southampton, Highfield, Southampton, SO17 1BJ (UK)
| | - Vincent Paumelle
- Chemistry, University of Southampton, Highfield, Southampton, SO17 1BJ (UK)
| | | | - Neil Wells
- Chemistry, University of Southampton, Highfield, Southampton, SO17 1BJ (UK)
| | - Alex Weymouth-Wilson
- Dextra Laboratories Ltd, The Science and Technology Centre, Earley Gate, Whiteknights Road, Reading RG6 6BZ (UK)
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12
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Linclau B, Wang Z, Compain G, Paumelle V, Fontenelle CQ, Wells N, Weymouth-Wilson A. Investigating the Influence of (Deoxy)fluorination on the Lipophilicity of Non-UV-Active Fluorinated Alkanols and Carbohydrates by a New log P
Determination Method. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201509460] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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13
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Santschi N, Aiguabella N, Lewe V, Gilmour R. Delineating the physical organic profile of the 6-fluoro glycosyl donor. J Fluor Chem 2015. [DOI: 10.1016/j.jfluchem.2015.06.004] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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14
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Davies SG, Fletcher AM, Frost AB, Roberts PM, Thomson JE. Asymmetric Synthesis of Substituted anti-β-Fluorophenylalanines. Org Lett 2015; 17:2254-7. [DOI: 10.1021/acs.orglett.5b00880] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Stephen G. Davies
- Department of Chemistry,
Chemistry Research Laboratory, University of Oxford, Mansfield
Road, Oxford OX1 3TA, U.K
| | - Ai M. Fletcher
- Department of Chemistry,
Chemistry Research Laboratory, University of Oxford, Mansfield
Road, Oxford OX1 3TA, U.K
| | - Aileen B. Frost
- Department of Chemistry,
Chemistry Research Laboratory, University of Oxford, Mansfield
Road, Oxford OX1 3TA, U.K
| | - Paul M. Roberts
- Department of Chemistry,
Chemistry Research Laboratory, University of Oxford, Mansfield
Road, Oxford OX1 3TA, U.K
| | - James E. Thomson
- Department of Chemistry,
Chemistry Research Laboratory, University of Oxford, Mansfield
Road, Oxford OX1 3TA, U.K
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