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Şuekinci Yılmaz A, Uluçam G. Novel N-benzyl-2-oxo-1,2-dihydrofuro [3,4-d]pyrimidine-3(4H)-carboxamide as anticancer agent: Synthesis, drug-likeness, ADMET profile, DFT and molecular modelling against EGFR target. Heliyon 2023; 9:e12948. [PMID: 36711281 PMCID: PMC9876965 DOI: 10.1016/j.heliyon.2023.e12948] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2022] [Revised: 01/06/2023] [Accepted: 01/10/2023] [Indexed: 01/15/2023] Open
Abstract
A novel compound N-benzyl-2-oxo-1,2-dihydrofuro [3,4-d]pyrimidine-3(4H)-carboxamide (DHFP) was synthesized by addition, rearrangement, and intramolecular cyclization reactions. The three-dimensional geometry of DHFP has been determined by density functional theory calculations in the gas phase. Thus, the geometrical properties of DHFP such as the bond lengths, bond angles, and dihedral bond angles have been determined in the optimized molecular configuration. Also, the HOMO-LUMO energies were calculated. The charge distribution of the DHFP has been calculated by Natural Population Analysis (NPA) approach. NMR and FTIR spectra were calculated and compared with their experimental corresponding to confirm the synthesis of the DHFP. The anticancer activities of the DHFP were also determined on human colon cancer (HT29) and prostate cancer (DU145) cell lines. Molecular docking studies of the DHFP with EGFR tyrosine kinase, which is responsible for cancer cell proliferation and growth, were performed and it was observed that docking interaction took place. The DHFP has the potential to be a drug, as it is determined that DHFP obeys Lipinski's five rules, can cross the blood-brain barrier, and can be rapidly absorbed from the gastrointestinal wall.
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Affiliation(s)
- Ayşen Şuekinci Yılmaz
- Corresponding author. Chemistry Department, Faculty of Science, Trakya University, 22030, Edirne, Turkey.
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2
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Hussain Z, A. Ibrahim M, M. El-Gohary N, A. Gabr Y, A. Allimony H, Badran AS. Utility of 6-Aminouracils for Building Substituted and Heteroannulated Pyrimidines: A Comprehensive Review. HETEROCYCLES 2023. [DOI: 10.3987/rev-23-1002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 04/03/2023]
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3
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Debnath P, Sahu G, De UC. Synthesis of functionalized pyrimidouracils by ruthenium‐catalyzed oxidative insertion of (hetero)aryl methanols into
N
‐uracil amidines. Appl Organomet Chem 2021. [DOI: 10.1002/aoc.6087] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Pradip Debnath
- Department of Chemistry Maharaja Bir Bikram College Agartala India
| | - Gouranga Sahu
- Department of Chemistry Ramkrishna Mahavidyalaya Unakoti India
| | - Utpal C. De
- Department of Chemistry Tripura University Agartala India
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4
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Collet JW, Morel B, Lin HC, Roose TR, Mampuys P, Orru RVA, Ruijter E, Maes BUW. Synthesis of Densely Functionalized Pyrimidouracils by Nickel(II)-Catalyzed Isocyanide Insertion. Org Lett 2020; 22:914-919. [PMID: 31942797 PMCID: PMC7011176 DOI: 10.1021/acs.orglett.9b04387] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
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A robust nickel-catalyzed oxidative
isocyanide insertion/C–H
amination by reaction of readily available N-uracil-amidines
with isocyanides affording polysubstituted pyrimidouracils has been
reported. The reaction proceeds in moderate to quantitative yield,
under mild conditions (i.e., green solvent, air atmosphere,
moderate temperature). The broad range of structurally diverse isocyanides
and N-uracil-amidines that are tolerated make this
method an interesting alternative to the currently available procedures
toward pyrimidouracils.
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Affiliation(s)
- Jurriën W Collet
- Department of Chemistry and Pharmaceutical Sciences and Amsterdam Institute for Molecules, Medicines & Systems (AIMMS) , Vrije Universiteit Amsterdam , De Boelelaan 1108 , 1081 HZ Amsterdam , The Netherlands.,Organic Synthesis, Department of Chemistry , University of Antwerp , Groenenborgerlaan 171 , 2020 Antwerp , Belgium
| | - Bénédicte Morel
- Organic Synthesis, Department of Chemistry , University of Antwerp , Groenenborgerlaan 171 , 2020 Antwerp , Belgium
| | - Hung-Chien Lin
- Department of Chemistry and Pharmaceutical Sciences and Amsterdam Institute for Molecules, Medicines & Systems (AIMMS) , Vrije Universiteit Amsterdam , De Boelelaan 1108 , 1081 HZ Amsterdam , The Netherlands
| | - Thomas R Roose
- Department of Chemistry and Pharmaceutical Sciences and Amsterdam Institute for Molecules, Medicines & Systems (AIMMS) , Vrije Universiteit Amsterdam , De Boelelaan 1108 , 1081 HZ Amsterdam , The Netherlands
| | - Pieter Mampuys
- Department of Chemistry and Pharmaceutical Sciences and Amsterdam Institute for Molecules, Medicines & Systems (AIMMS) , Vrije Universiteit Amsterdam , De Boelelaan 1108 , 1081 HZ Amsterdam , The Netherlands.,Organic Synthesis, Department of Chemistry , University of Antwerp , Groenenborgerlaan 171 , 2020 Antwerp , Belgium
| | - Romano V A Orru
- Department of Chemistry and Pharmaceutical Sciences and Amsterdam Institute for Molecules, Medicines & Systems (AIMMS) , Vrije Universiteit Amsterdam , De Boelelaan 1108 , 1081 HZ Amsterdam , The Netherlands
| | - Eelco Ruijter
- Department of Chemistry and Pharmaceutical Sciences and Amsterdam Institute for Molecules, Medicines & Systems (AIMMS) , Vrije Universiteit Amsterdam , De Boelelaan 1108 , 1081 HZ Amsterdam , The Netherlands
| | - Bert U W Maes
- Organic Synthesis, Department of Chemistry , University of Antwerp , Groenenborgerlaan 171 , 2020 Antwerp , Belgium
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Debnath P. TBHP-mediated oxidative synthesis of substituted pyrimido[4,5- d]pyrimidines from N-uracil amidines and methylarenes under metal free conditions. RSC Adv 2019; 9:29831-29839. [PMID: 35559119 PMCID: PMC9092612 DOI: 10.1039/c9ra06625j] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2019] [Accepted: 09/10/2019] [Indexed: 12/14/2022] Open
Abstract
An efficient and operationally simple protocol has been demonstrated for the synthesis of 1,3,5,7-tetrasubstituted pyrimido[4,5-d]pyrimidines via TBHP-mediated direct oxidative coupling of N-uracil amidines and methylarenes under metal-free conditions. Due to the inherent stability of methylarenes compared to aldehydes, the presented synthetic protocol is adaptable to a broad substrate scope, is operationally simple, has no need for stringent protection in the whole preparation process, and has the potential to prepare valuable products that are currently inaccessible or challenging to prepare using conventional methods. It is a significantly important complement to the conventional synthetic methods. The reaction possesses an efficient tandem oxidation-imination-cyclization process.
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Affiliation(s)
- Pradip Debnath
- Department of Chemistry, Maharaja Bir Bikram College Agartala Tripura-799004 India +3812516728 +3812526607
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Politanskaya LV, Selivanova GA, Panteleeva EV, Tretyakov EV, Platonov VE, Nikul’shin PV, Vinogradov AS, Zonov YV, Karpov VM, Mezhenkova TV, Vasilyev AV, Koldobskii AB, Shilova OS, Morozova SM, Burgart YV, Shchegolkov EV, Saloutin VI, Sokolov VB, Aksinenko AY, Nenajdenko VG, Moskalik MY, Astakhova VV, Shainyan BA, Tabolin AA, Ioffe SL, Muzalevskiy VM, Balenkova ES, Shastin AV, Tyutyunov AA, Boiko VE, Igumnov SM, Dilman AD, Adonin NY, Bardin VV, Masoud SM, Vorobyeva DV, Osipov SN, Nosova EV, Lipunova GN, Charushin VN, Prima DO, Makarov AG, Zibarev AV, Trofimov BA, Sobenina LN, Belyaeva KV, Sosnovskikh VY, Obydennov DL, Usachev SA. Organofluorine chemistry: promising growth areas and challenges. RUSSIAN CHEMICAL REVIEWS 2019. [DOI: 10.1070/rcr4871] [Citation(s) in RCA: 94] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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7
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Khodabakhshi MR, Kiamehr M, Moghaddam FM, Villinger A, Langer P. PTSA-Catalyzed Cyclization of 6-Aminouracils with Diimines: Efficient Synthesis of Functionalized Tetrahydropyrimido[4,5-d
]pyrimidine-2,4-diones. ChemistrySelect 2018. [DOI: 10.1002/slct.201801869] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Mohammad R. Khodabakhshi
- Applied Biotechnology Research Center; Baqiyatallah University of Medical Sciences, Vanak Square, Mollasadra Ave. P.O. Box; 1435915371 Tehran Iran
| | - Mostafa Kiamehr
- Department of Chemistry, Faculty of Science; University of Qom, Ghadir Blvd, P.O. Box; 3716146611 Qom Iran
| | - Firouz M. Moghaddam
- Laboratory of Organic Synthesis and Natural Products; Department of Chemistry, Sharif University of Technology, PO Box; 11155-9516 Tehran Iran
| | - Alexander Villinger
- Institut für Chemie der Universität Rostock; Albert-Einstein-Straße 3a, D- 18059 Rostock Germany
| | - Peter Langer
- Institut für Chemie der Universität Rostock; Albert-Einstein-Straße 3a, D- 18059 Rostock Germany
- Leibniz Institut für Katalyse e.V. an der Universität Rostock; Albert-Einstein-Straße 29a D-18059 Rostock Germany
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Chavan RR, Hosamani KM, Kulkarni BD, Joshi SD. Molecular docking studies and facile synthesis of most potent biologically active N-tert-butyl-4-(4-substituted phenyl)-2-((substituted-2-oxo-2H-chromen-4-yl)methylthio)-6-oxo-1,6-dihydropyrimidine-5-carboxamide hybrids: An approach for microwave-assisted syntheses and biological evaluation. Bioorg Chem 2018; 78:185-194. [DOI: 10.1016/j.bioorg.2018.03.007] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2017] [Revised: 02/17/2018] [Accepted: 03/06/2018] [Indexed: 12/12/2022]
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Synthesis of Some Novel Thiazolo[3,2-a]pyrimidine and Pyrimido[2,1-b][1,3]thiazine Derivatives and their Antimicrobial Evaluation. J Heterocycl Chem 2018. [DOI: 10.1002/jhet.3174] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
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Karimian A, Karimian H. Synthesis of new derivatives of 4-(4-methyl-5 H-pyrimido[4,5- b][1,4]thiazin-2-yl)morpholine and 4-methyl-2-(piperidin-1-yl)-5 H-pyrimido[4,5- b][1,4]thiazine. JOURNAL OF CHEMICAL RESEARCH 2017. [DOI: 10.3184/174751917x14967701767049] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Several derivatives of the novel 4-(4-methyl-5 H-pyrimido[4,5- b][1,4]thiazin-2-yl)morpholine and 4-methyl-2-(piperidin-1-yl)-5 H-pyrimido[4,5- b][1,4]thiazine ring systems have been synthesised through cyclocondensation of 5-amino-6-methylpyrimidine-4-thiols and the appropriate α-haloketone in glacial acetic acid under reflux.
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Affiliation(s)
- Azam Karimian
- Department of Chemistry, Faculty of Sciences, University of Gonabad, Gonabad, Iran
| | - Hassan Karimian
- Department of Environment, Faculty of Environment, University of Tehran, Tehran, Iran
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