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Bu F, Chen L, Sun Y, Zhao B, Wang R. Insight into the Binding Interaction between PEDCs and hERRγ Utilizing Molecular Docking and Molecular Dynamics Simulations. Molecules 2024; 29:3256. [PMID: 39064835 PMCID: PMC11278984 DOI: 10.3390/molecules29143256] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2024] [Revised: 07/03/2024] [Accepted: 07/03/2024] [Indexed: 07/28/2024] Open
Abstract
Phenolic environmental endocrine-disrupting chemicals (PEDCs) are persistent EDCs that are widely found in food packaging materials and environmental media and seriously threaten human health and ecological security. Human estrogen-related receptor γ (hERRγ) has been proposed as a mediator for the low-dose effects of many environmental PEDCs; however, the atomic-level descriptions of dynamical structural features and interactions of hERRγ and PEDCs are still unclarified. Herein, how three PEDCs, 4-(1-methylpropyl)phenol (4-sec-butylphenol), 5,6,7,8-tetrahydro-2-naphthol (tetrahydro-2-napthol), and 2,2-bis(4-hydroxy-3,5-dimethoxyphenyl)propane (BP(2,2)(Me)), interact with hERRγ to produce its estrogenic disruption effects was studied. Molecular docking and multiple molecular dynamics (MD) simulations were first conducted to distinguish the detailed interaction pattern of hERRγ with PEDCs. These binding structures revealed that residues around Leu271, Leu309, Leu345, and Phe435 are important when binding with PEDCs. Furthermore, the binding energies of PEDCs with hERRγ were also characterized using the molecular mechanics/Poisson Boltzmann surface area (MM-PBSA) and solvated interaction energy (SIE) methods, and the results showed that the interactions of CH-π, π-π, and hydrogen bonds are the major contributors for hERRγ binding to these three PEDCs. What is striking is that the methoxide groups of BP(2,2)(Me), as hydrophobic groups, can help to reduce the binding energy of PEDCs binding with hERRγ. These results provide important guidance for further understanding the influence of PEDCs on human health problems.
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Affiliation(s)
- Fanqiang Bu
- College of Chemistry and Chemical Engineering, Qiqihar University, Qiqihar 161006, China; (F.B.); (Y.S.); (B.Z.)
- State Key Laboratory of Organic-Inorganic Composites, Beijing Laboratory of Biomedical Materials, Beijing University of Chemical Technology, Beijing 100029, China
| | - Lin Chen
- College of Chemistry and Chemical Engineering, Qiqihar University, Qiqihar 161006, China; (F.B.); (Y.S.); (B.Z.)
| | - Ying Sun
- College of Chemistry and Chemical Engineering, Qiqihar University, Qiqihar 161006, China; (F.B.); (Y.S.); (B.Z.)
| | - Bing Zhao
- College of Chemistry and Chemical Engineering, Qiqihar University, Qiqihar 161006, China; (F.B.); (Y.S.); (B.Z.)
- Heilongjiang Provincial Key Laboratory of Surface Active Agent and Auxiliary, Qiqihar University, Qiqihar 161006, China
| | - Ruige Wang
- College of Chemistry and Chemical Engineering, Qiqihar University, Qiqihar 161006, China; (F.B.); (Y.S.); (B.Z.)
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Loos R, Daouk S, Marinov D, Gómez L, Porcel-Rodríguez E, Sanseverino I, Amalric L, Potalivo M, Calabretta E, Ferenčík M, Colzani L, DellaVedova L, Amendola L, Saurini M, Di Girolamo F, Lardy-Fontan S, Sengl M, Kunkel U, Svahn O, Weiss S, De Martin S, Gelao V, Bazzichetto M, Tarábek P, Stipaničev D, Repec S, Zacs D, Ricci M, Golovko O, Flores C, Ramani S, Rebane R, Rodríguez JA, Lettieri T. Summary recommendations on "Analytical methods for substances in the Watch List under the Water Framework Directive". THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 912:168707. [PMID: 37992820 DOI: 10.1016/j.scitotenv.2023.168707] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2023] [Revised: 11/16/2023] [Accepted: 11/17/2023] [Indexed: 11/24/2023]
Abstract
The Watch List (WL) is a monitoring program under the European Water Framework Directive (WFD) to obtain high-quality Union-wide monitoring data on potential water pollutants for which scarce monitoring data or data of insufficient quality are available. The main purpose of the WL data collection is to determine if the substances pose a risk to the aquatic environment at EU level and subsequently to decide whether a threshold, the Environmental Quality Standards (EQS) should be set for them and, potentially to be listed as priority substance in the WFD. The first WL was established in 2015 and contained 10 individual or groups of substances while the 4th WL was launched in 2022. The results of monitoring the substances of the first WL showed that some countries had difficulties to reach an analytical Limit of Quantification (LOQ) below or equal to the Predicted No-Effect Concentrations (PNEC) or EQS. The Joint Research Centre (JRC) of the European Commission (EC) organised a series of workshops to support the EU Member States (MS) and their activities under the WFD. Sharing the knowledge among the Member States on the analytical methods is important to deliver good data quality. The outcome and the discussion engaged with the experts are described in this paper, and in addition a literature review of the most important publications on the analysis of 17-alpha-ethinylestradiol (EE2), amoxicillin, ciprofloxacin, metaflumizone, fipronil, metformin, and guanylurea from the last years is presented.
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Affiliation(s)
- Robert Loos
- European Commission, Joint Research Centre (JRC), Ispra, VA, Italy
| | | | | | - Livia Gómez
- European Commission, Joint Research Centre (JRC), Ispra, VA, Italy
| | | | | | | | | | | | - Martin Ferenčík
- Povodí Labe, státní podnik, Czech Republic; Institute of Environmental and Chemical Engineering, University of Pardubice, Czech Republic
| | - Luisa Colzani
- ARPA Lombardia, the Regional Environmental Protection Agency-Lombardy Region, Italy
| | - Luisa DellaVedova
- ARPA Lombardia, the Regional Environmental Protection Agency-Lombardy Region, Italy
| | - Luca Amendola
- ARPA Lazio, the Regional Environmental Protection Agency-Lazio Region, Italy
| | - Mariateresa Saurini
- ARPA Lazio, the Regional Environmental Protection Agency-Lazio Region, Italy
| | | | - Sophie Lardy-Fontan
- French Agency for Food, Environmental and Occupational Health & Safety (ANSES), France
| | | | - Uwe Kunkel
- Bavarian Environment Agency (LfU), Germany
| | - Ola Svahn
- Kristianstad University, MoLab, Sweden
| | - Stefan Weiss
- Federal Environment Agency, Umweltbundesamt (GmbH), Austria
| | - Stefano De Martin
- ARPA FVG, the Regional Environmental Protection Agency-Friuli Venezia Giulia Region, Italy
| | - Vito Gelao
- ARPA FVG, the Regional Environmental Protection Agency-Friuli Venezia Giulia Region, Italy
| | - Michele Bazzichetto
- ARPA FVG, the Regional Environmental Protection Agency-Friuli Venezia Giulia Region, Italy
| | - Peter Tarábek
- Water Research Institute (VÚVH), National Water Reference Laboratory, Slovakia
| | | | - Siniša Repec
- Josip Juraj Strossmayer Water Institute, Central Water Laboratory, Croatia
| | - Dzintars Zacs
- Institute of Food Safety, Animal Health and Environment "BIOR", Latvia
| | - Marina Ricci
- European Commission, Joint Research Centre (JRC), Geel, Belgium
| | - Oksana Golovko
- Department of Aquatic Sciences and Assessment, Swedish University of Agricultural Sciences (SLU), Sweden
| | - Cintia Flores
- Mass Spectrometry Laboratory/Organic Pollutants, Institute of Environmental Assessment and Water Research (IDAEA-CSIC), Spain
| | | | - Riin Rebane
- Estonian Environmental Research Centre, Estonia
| | - Juan Alández Rodríguez
- Área de Vigilancia y Control de Calidad de las Aguas, Ministerio para la Transición Ecológica y el Reto Demográfico, Spain
| | - Teresa Lettieri
- European Commission, Joint Research Centre (JRC), Ispra, VA, Italy.
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Ma Y, Wang J, Liu Y, Wang X, Zhang B, Zhang W, Chen T, Liu G, Xue L, Cui X. Nocardioides: "Specialists" for Hard-to-Degrade Pollutants in the Environment. Molecules 2023; 28:7433. [PMID: 37959852 PMCID: PMC10649934 DOI: 10.3390/molecules28217433] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Revised: 10/24/2023] [Accepted: 11/01/2023] [Indexed: 11/15/2023] Open
Abstract
Nocardioides, a genus belonging to Actinomycetes, can endure various low-nutrient conditions. It can degrade pollutants using multiple organic materials such as carbon and nitrogen sources. The characteristics and applications of Nocardioides are described in detail in this review, with emphasis on the degradation of several hard-to-degrade pollutants by using Nocardioides, including aromatic compounds, hydrocarbons, haloalkanes, nitrogen heterocycles, and polymeric polyesters. Nocardioides has unique advantages when it comes to hard-to-degrade pollutants. Compared to other strains, Nocardioides has a significantly higher degradation rate and requires less time to break down substances. This review can be a theoretical basis for developing Nocardioides as a microbial agent with significant commercial and application potential.
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Affiliation(s)
- Yecheng Ma
- College of Biotechnology and Pharmaceutical Engineering, Lanzhou Jiaotong University, Lanzhou 730070, China
| | - Jinxiu Wang
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
- Key Laboratory of Desert and Desertification, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Yang Liu
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
- State Key Laboratory of Cryospheric Sciences, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Xinyue Wang
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
- State Key Laboratory of Cryospheric Sciences, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Binglin Zhang
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
- State Key Laboratory of Cryospheric Sciences, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Wei Zhang
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
- Key Laboratory of Desert and Desertification, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Tuo Chen
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
- State Key Laboratory of Cryospheric Sciences, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Guangxiu Liu
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
- Key Laboratory of Desert and Desertification, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Lingui Xue
- College of Biotechnology and Pharmaceutical Engineering, Lanzhou Jiaotong University, Lanzhou 730070, China
| | - Xiaowen Cui
- College of Geography and Environment Science, Northwest Normal University, Lanzhou 730070, China
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