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Domínguez-Rodrigo M, Brophy J, Mathews GJ, Pizarro-Monzo M, Baquedano E. African bovid tribe classification using transfer learning and computer vision. Ann N Y Acad Sci 2023; 1530:152-160. [PMID: 37804072 DOI: 10.1111/nyas.15067] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/08/2023]
Abstract
Objective analytical identification methods are still a minority in the praxis of paleobiological sciences. Subjective interpretation of fossils and their modifications remains a nonreplicable expert endeavor. Identification of African bovids is a crucial element in the reconstruction of paleo-landscapes, ungulate paleoecology, and, eventually, hominin adaptation and ecosystemic reconstruction. Recent analytical efforts drawing on Fourier functional analysis and discrimination methods applied to occlusal surfaces of teeth have provided a highly accurate framework to correctly classify African bovid tribes and taxa. Artificial intelligence tools, like computer vision, have also shown their potential to be objectively more accurate in the identification of taphonomic agency than human experts. For this reason, here we implement some of the most successful computer vision methods, using transfer learning and ensemble analysis, to classify bidimensional images of African bovid teeth and show that 92% of the large testing set of images of African bovid tribes analyzed could be correctly classified. This brings an objective tool to paleoecological interpretation, where bovid identification and paleoecological interpretation can be more confidently carried out.
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Affiliation(s)
- Manuel Domínguez-Rodrigo
- Institute of Evolution in Africa (IDEA), University of Alcalá de Henares, Madrid, Spain
- Area of Prehistory, Department of History and Philosophy, University of Alcalá de Henares, Alcalá de Henares, Spain
- Department of Anthropology, Rice University, Houston, Texas, USA
| | - Juliet Brophy
- Department of Geography and Anthropology, Louisiana State University, Baton Rouge, Louisiana, USA
- Centre for the Exploration of the Deep Human Journey, University of the Witwatersrand, Johannesburg, South Africa
| | - Gregory J Mathews
- Department of Mathematics and Statistics, Loyola University, University of Chicago, Chicago, Illinois, USA
| | - Marcos Pizarro-Monzo
- Institute of Evolution in Africa (IDEA), University of Alcalá de Henares, Madrid, Spain
- Institut Català de Paleoecologia Humana i Evolució Social (IPHES), Universitat Rovira i Virgili, Tarragona, Spain
| | - Enrique Baquedano
- Institute of Evolution in Africa (IDEA), University of Alcalá de Henares, Madrid, Spain
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Villaseñor A, Uno KT, Kinyanjui RN, Behrensmeyer AK, Bobe R, Advokaat EL, Bamford M, Carvalho SC, Hammond AS, Palcu DV, Sier MJ, Ward CV, Braun DR. Pliocene hominins from East Turkana were associated with mesic environments in a semiarid basin. J Hum Evol 2023; 180:103385. [PMID: 37229946 DOI: 10.1016/j.jhevol.2023.103385] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2022] [Revised: 04/15/2023] [Accepted: 04/19/2023] [Indexed: 05/27/2023]
Abstract
During the middle Pliocene (∼3.8-3.2 Ma), both Australopithecus afarensis and Kenyanthropus platyops are known from the Turkana Basin, but between 3.60 and 3.44 Ma, most hominin fossils are found on the west side of Lake Turkana. Here, we describe a new hominin locality (ET03-166/168, Area 129) from the east side of the lake, in the Lokochot Member of the Koobi Fora Formation (3.60-3.44 Ma). To reconstruct the paleoecology of the locality and its surroundings, we combine information from sedimentology, the relative abundance of associated mammalian fauna, phytoliths, and stable isotopes from plant wax biomarkers, pedogenic carbonates, and fossil tooth enamel. The combined evidence provides a detailed view of the local paleoenvironment occupied by these Pliocene hominins, where a biodiverse community of primates, including hominins, and other mammals inhabited humid, grassy woodlands in a fluvial floodplain setting. Between <3.596 and 3.44 Ma, increases in woody vegetation were, at times, associated with increases in arid-adapted grasses. This suggests that Pliocene vegetation included woody species that were resilient to periods of prolonged aridity, resembling vegetation structure in the Turkana Basin today, where arid-adapted woody plants are a significant component of the ecosystem. Pedogenic carbonates indicate more woody vegetation than other vegetation proxies, possibly due to differences in temporospatial scale and ecological biases in preservation that should be accounted for in future studies. These new hominin fossils and associated multiproxy paleoenvironmental indicators from a single locale through time suggest that early hominin species occupied a wide range of habitats, possibly including wetlands within semiarid landscapes. Local-scale paleoecological evidence from East Turkana supports regional evidence that middle Pliocene eastern Africa may have experienced large-scale, climate-driven periods of aridity. This information extends our understanding of hominin environments beyond the limits of simple wooded, grassy, or mosaic environmental descriptions.
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Affiliation(s)
- Amelia Villaseñor
- Department of Anthropology, The University of Arkansas, 330 Old Main, Fayetteville, AR, 72701, USA.
| | - Kevin T Uno
- Lamont-Doherty Earth Observatory of Columbia University, Division of Biology and Paleo Environment, Palisades, NY, 10964, USA
| | - Rahab N Kinyanjui
- Department of Earth Sciences, National Museums of Kenya, Nairobi, 40658-00100, Kenya; Department of Archaeology, Max Planck Institute of Geoanthropology, 07745, Jena, Germany; Human Origins Program, National Museum of Natural History, Smithsonian Institution, MRC 121, Washington, DC, 20013, USA
| | - Anna K Behrensmeyer
- Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, MRC 121, Washington, DC, 20013, USA
| | - René Bobe
- Primate Models for Behavioural Evolution Lab, Institute of Human Sciences, University of Oxford, 64 Banbury Road, Oxford, OX2 6PN, UK; Gorongosa National Park, Sofala, Mozambique
| | - Eldert L Advokaat
- Department of Earth Sciences, Utrecht University, Princetonlaan 8A, 3584 CB Utrecht, the Netherlands
| | - Marion Bamford
- Evolutionary Studies Institute and School of Geosciences, University of the Witwatersrand, P Bag 3, WITS, 2050, South Africa
| | - Susana C Carvalho
- Primate Models for Behavioural Evolution Lab, Institute of Human Sciences, University of Oxford, 64 Banbury Road, Oxford, OX2 6PN, UK; Gorongosa National Park, Sofala, Mozambique; Interdisciplinary Center for Archaeology and Evolution of Human Behaviour (ICArEHB), Universidade do Algarve, 8005-139, Faro, Portugal
| | - Ashley S Hammond
- Division of Anthropology, American Museum of Natural History (AMNH), New York, NY, 10024, USA; New York Consortium in Evolutionary Primatology at AMNH, New York, NY, 10024, USA
| | - Dan V Palcu
- Oceanographic Institute of the University of São Paulo, Brazil; Paleomagnetic Laboratory 'Fort Hoofddijk', Utrecht University, Budapestlaan 17, 3584 CD, Utrecht, the Netherlands
| | - Mark J Sier
- Centro Nacional de Investigación Sobre la Evolución Humana (CENIEH), Paseo Sierra de Atapuerca 3, 09002, Burgos, Spain; Department of Earth Sciences, University of Oxford, South Parks Road, OX1 3AN, Oxford, UK; Department of Earth Sciences, Utrecht University, Princetonlaan 8A, 3584 CB Utrecht, the Netherlands
| | - Carol V Ward
- Department of Pathology and Anatomical Sciences, University of Missouri, Columbia, MO, USA
| | - David R Braun
- Center for the Advanced Study of Human Paleobiology, Anthropology Department, George Washington University, Washington, DC, USA
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Frost SR, Jablonski NG, Haile-Selassie Y. The earliest most complete skeleton of Theropithecus. J Hum Evol 2023; 180:103370. [PMID: 37167814 DOI: 10.1016/j.jhevol.2023.103370] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2022] [Revised: 03/30/2023] [Accepted: 03/30/2023] [Indexed: 05/13/2023]
Abstract
The middle Pliocene site of Woranso-Mille in the Afar Region of Ethiopia has yielded numerous significant early hominin fossils representing multiple, coexisting taxa. Here we report on another significant discovery, the oldest partial skeleton of the papionin, Theropithecus. The specimen was recovered from the Aralee Issie collection area over multiple field seasons from 2004 through 2019. The specimen was unearthed in situ from the fluvial facies of the Mesgid Dora Tuff dated to 3.66-3.57 Ma. The partial skeleton, ARI-VP-1/26, is that of a subadult male lacking a skull. In the absence of unambiguously associated craniodental remains, the male status of the specimen was established from the dimensions of the long bones in comparison to those of other Theropithecus from Woranso-Mille. ARI-VP-1/26 is noteworthy because it preserves partial hand and foot skeletons, including a complete set of metacarpals from the left side. The theropith status of ARI-VP-1/26 was established based on the detailed anatomy of the postcranial skeleton, especially the proximal and distal humerus, proximal radius, and proximal femur. The morphology of the postcranium of ARI-VP-1/26 is consistent with that of recognized Theropithecus from Woranso-Mille and, specifically, with specimens recognized as Theropithecus oswaldi cf. darti from other sites. The ratio of the lengths of the first metacarpal to metacarpals 2-5 in ARI-VP-1/26 is intermediate between that seen in extant Papio and Theropithecus. In Theropithecus gelada and Theropithecus brumpti, the pairing of pollical and indical metacarpals of near equal length contributes to the species' high opposability index and is associated with a 'manual grazing' feeding habit. Cercopithecids constitute 43% of the identified vertebrates at Aralee Issie, and T. oswaldi cf. darti is the most common mammalian species. The monkeys of Aralee Issie lived in an open shrubland habitat, but the specific reasons for their high prevalence at the site are unclear.
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Affiliation(s)
- Stephen R Frost
- Department of Anthropology, University of Oregon, Eugene, OR 97403-1218, USA.
| | - Nina G Jablonski
- Department of Anthropology, The Pennsylvania State University, 409 Carpenter Building, University Park, PA 16802, USA
| | - Yohannes Haile-Selassie
- Institute of Human Origins, School of Human Evolution and Social Change, Arizona State University, Tempe, AZ 85281, USA
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Comparative description and taxonomic affinity of 3.7-million-year-old hominin mandibles from Woranso-Mille (Ethiopia). J Hum Evol 2022; 173:103265. [PMID: 36306541 DOI: 10.1016/j.jhevol.2022.103265] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2021] [Revised: 09/02/2022] [Accepted: 09/02/2022] [Indexed: 11/06/2022]
Abstract
Fossil discoveries of early Australopithecus species from Woranso-Mille have played a significant role in improving our understanding of mid-Pliocene hominin evolution and diversity. Here, we describe two mandibles with dentitions, recovered from sediments immediately above a tuff radiometrically dated to 3.76 ± 0.02 Ma, and assess their taxonomic affinity. The two mandibles (MSD-VP-5/16 and MSD-VP-5/50) show morphological similarities with both Australopithecus anamensis and Australopithecus afarensis. Some of the unique features that distinguish Au. anamensis from Au. afarensis are present in the mandibles, which also share a few derived features with Au. afarensis. Their retention of more Kanapoi Au. anamensis-like traits, compared to the fewer derived features they share with Au. afarensis, and the presence of Au. anamensis at Woranso-Mille in 3.8-million-year-old deposits, lends support to their assignment to Au. anamensis. However, it is equally arguable that the few derived dentognathic features they share with Au. afarensis could be taxonomically more significant, making it difficult to conclusively assign these specimens to either species. Regardless of which species they are assigned to, the mosaic nature of the dentognathic morphology and geological age of the two mandibles lends further support to the hypothesized ancestor-descendant relationship between Au. anamensis and Au. afarensis. However, there is now limited fossil evidence indicating that these two species may have overlapped in time. Hence, the last appearance of Au. anamensis and first appearance of Au. afarensis are currently unknown. Recovery of Australopithecus fossils from 4.1 to 3.8 Ma is critical to further address the timing of these events.
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Mosaic habitats at Woranso-Mille (Ethiopia) during the Pliocene and implications for Australopithecus paleoecology and taxonomic diversity. J Hum Evol 2022; 163:103076. [PMID: 34998271 DOI: 10.1016/j.jhevol.2021.103076] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2021] [Revised: 08/27/2021] [Accepted: 08/27/2021] [Indexed: 11/21/2022]
Abstract
Many important Pliocene hominin specimens have been recovered from Woranso-Mille, a paleontological research area in the Afar region of Ethiopia, including the complete cranium of Australopithecus anamensis, a partial skeleton of Australopithecus afarensis, mandibular and maxillary elements representing a new species, Australopithecus deyiremeda, and a partial foot of an as-yet-unnamed species. Woranso-Mille is the only site, so far, to have reported the co-existence of more than one early hominin species between 3.8 and 3.3 Ma and the temporal overlap between A. anamensis and A. afarensis. Thus, the site has important implications for our understanding of the paleoecology and taxonomic diversity of early hominins and their ecological niche. This paper explores the paleohabitats of Woranso-Mille through its faunal community ecological structure and taxonomic composition using correspondence analysis and Forbes modified similarity index. The results suggest that Pliocene Woranso-Mille was a mosaic of different habitat types, with riparian woodland and floodplain grassland along rivers draining into a lake, along with less mesic habitats such as woodland, grassland, and shrubland. The apparent high level of vegetation heterogeneity may have promoted dietary specializations and niche differentiation among the different Australopithecus species at Woranso-Mille and allowed for their co-existence at the site.
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Dumouchel L, Bobe R, Wynn JG, Barr WA. The environments of Australopithecus anamensis at Allia Bay, Kenya: A multiproxy analysis of early Pliocene Bovidae. J Hum Evol 2021; 151:102928. [PMID: 33453510 DOI: 10.1016/j.jhevol.2020.102928] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2020] [Revised: 12/01/2020] [Accepted: 12/01/2020] [Indexed: 11/18/2022]
Abstract
Australopithecus anamensis, among the earliest fully bipedal hominin species, lived in eastern Africa around 4 Ma. Much of what is currently known about the paleoecology of A. anamensis comes from the type locality, Kanapoi, Kenya. Here, we extend knowledge of the range of environments occupied by A. anamensis by presenting the first multiproxy paleoecological analysis focusing on Bovidae excavated from another important locality where A. anamensis was recovered, locality 261-1 (ca. 3.97 Ma) at Allia Bay, East Turkana, Kenya. Paleoenvironments are reconstructed using astragalar ecomorphology, mesowear, hypsodonty index, and oxygen and carbon isotopes from dental enamel. We compare our results to those obtained from Kanapoi. Our results show that the bovid community composition is similar between the two fossil assemblages. Allia Bay and Kanapoi bovid astragalar ecomorphology spans the spectrum of modern morphologies indicative of grassland, woodland, and even forest-adapted forms. Dietary reconstructions based on stable isotopes, mesowear, and hypsodonty reveal that these bovids' diet encompassed the full C3 to C4 dietary spectrum and overlap in the two data sets. Our results allow us to confidently extend our reconstructions of the paleoenvironments of A. anamensis at Kanapoi to Allia Bay, where this pivotal hominin species is associated with heterogeneous settings including habitats with varying degrees of tree cover, including grasslands, bushlands, and woodlands.
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Affiliation(s)
- Laurence Dumouchel
- Department of Anthropology, Wichita State University, 1845 Fairmount Street, Wichita, KS 67260, USA.
| | - René Bobe
- Primate Models for Behavioural Evolution Lab, Institute of Cognitive & Evolutionary Anthropology, School of Anthropology, University of Oxford, 64 Banbury Rd, Park Town, Oxford, OX2 6PN, UK; Paleo-Primate Project Gorongosa, Gorongosa National Park, Sofala, Mozambique; Interdisciplinary Center for Archaeology and Evolution of Human Behaviour (ICArEHB), Universidade Do Algarve, Campus de Penha, Faro, 8005-139, Portugal
| | - Jonathan G Wynn
- Division of Earth Sciences, National Science Foundation, 2415 Eisenhower Avenue, Alexandria, VA 22314, USA
| | - W Andrew Barr
- Center for the Advanced Study of Human Paleobiology, The George Washington University, 800 22(nd)Street Northwest, Suite 6000, Washington, DC 20052, USA
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A genotype:phenotype approach to testing taxonomic hypotheses in hominids. Naturwissenschaften 2020; 107:40. [PMID: 32870408 DOI: 10.1007/s00114-020-01696-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2020] [Revised: 04/20/2020] [Accepted: 08/19/2020] [Indexed: 10/23/2022]
Abstract
Paleontology has long relied on assumptions about the genetic and developmental influences on skeletal variation. The last few decades of developmental genetics have elucidated the genetic pathways involved in making teeth and patterning the dentition. Quantitative genetic analyses have refined this genotype:phenotype map even more, especially for primates. We now have the ability to define dental traits with a fair degree of fidelity to the underlying genetic architecture; for example, the molar module component (MMC) and the premolar-molar module (PMM) that have been defined through quantitative genetic analyses. We leverage an extensive dataset of extant and extinct hominoid dental variation to explore how these two genetically patterned phenotypes have evolved through time. We assess MMC and PMM to test the hypothesis that these two traits reveal a more biologically informed taxonomy at the genus and species levels than do more traditional measurements. Our results indicate that MMC values for hominids fall into two categories and that Homo is derived compared with earlier taxa. We find a more variable, species-level pattern for PMM. These results, in combination with previous research, demonstrate that MMC reflects the phenotypic output of a more evolutionarily stable, or phylogenetically congruent, genetic mechanism, and PMM is a reflection of a more evolutionarily labile mechanism. These results suggest that the human lineage since the split with chimpanzees may not represent as much genus-level variation as has been inferred from traits whose etiologies are not understood.
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Dumouchel L, Bobe R. Paleoecological implications of dental mesowear and hypsodonty in fossil ungulates from Kanapoi. J Hum Evol 2020; 140:102548. [DOI: 10.1016/j.jhevol.2018.11.004] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2016] [Revised: 09/27/2018] [Accepted: 11/06/2018] [Indexed: 11/30/2022]
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Du A, Rowan J, Wang SC, Wood BA, Alemseged Z. Statistical estimates of hominin origination and extinction dates: A case study examining the Australopithecus anamensis–afarensis lineage. J Hum Evol 2020; 138:102688. [DOI: 10.1016/j.jhevol.2019.102688] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2018] [Revised: 10/03/2019] [Accepted: 10/09/2019] [Indexed: 11/28/2022]
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Haile-Selassie Y, Ryan TM. Comparative description and taxonomy of new hominin juvenile mandibles from the Pliocene of Woranso-Mille (Central Afar, Ethiopia). J Hum Evol 2019; 132:15-31. [DOI: 10.1016/j.jhevol.2019.04.005] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2018] [Revised: 04/13/2019] [Accepted: 04/15/2019] [Indexed: 12/01/2022]
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Quinn RL. Isotopic equifinality and rethinking the diet of
Australopithecus anamensis. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY 2019; 169:403-421. [DOI: 10.1002/ajpa.23846] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2018] [Revised: 03/08/2019] [Accepted: 04/16/2019] [Indexed: 01/06/2023]
Affiliation(s)
- Rhonda L. Quinn
- Department of Sociology, Anthropology and Social WorkSeton Hall University South Orange New Jersey
- Department of Earth and Planetary SciencesRutgers University Piscataway New Jersey
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Forrest FL, Plummer TW, Raaum RL. Ecomorphological analysis of bovid mandibles from Laetoli Tanzania using 3D geometric morphometrics: Implications for hominin paleoenvironmental reconstruction. J Hum Evol 2018; 114:20-34. [DOI: 10.1016/j.jhevol.2017.09.010] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2014] [Revised: 09/16/2017] [Accepted: 09/23/2017] [Indexed: 11/16/2022]
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