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Yang Y, Yu J, Jiang X, Lai K, Miao J. Insight into the interaction between amino acids and SO 2: Detailed bonding modes. J Mol Model 2024; 30:291. [PMID: 39073631 DOI: 10.1007/s00894-024-06083-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2024] [Accepted: 07/15/2024] [Indexed: 07/30/2024]
Abstract
CONTEXT Amino acids are a highly effective and environmentally friendly adsorbent for SO2. However, there has been no comprehensive study of the binding modes between amino acids and SO2 at the molecular level. In this paper, the binding modes of three amino acids (Asp, Lys, and Val) with SO2 are studied comprehensively and in detail using quantum chemical calculations. The results indicate that each amino acid has multiple binding modes: 22 for Asp, 49 for Lys, and 10 for Val. Both the amino and carboxyl groups in amino acids, as well as those in side chains, can serve as binding sites for chalcogen bonds. The binding energies range from - 6.42 to - 1.06 kcal/mol for Asp, - 12.43 to - 1.63 kcal/mol for Lys, and - 7.42 to - 0.60 kcal/mol for Val. Chalcogen and hydrogen bonds play a crucial role in the stronger binding modes. The chalcogen bond is the strongest when interacting with an amino group, with an adiabatic force constant of 0.475 mDyn/Å. Energy decomposition analysis indicates that the interaction is primarily electrostatic attraction, with the orbital and dispersive interactions dependent on the binding mode. METHODS Amino acids and complexes of amino acids with SO2 were used to do semi-empirical MD using Molclus combined with xtb at the GFN2 level. Optimization and frequency calculations of the structures were conducted using density-functional theory (DFT) B3LYP/6-311G* (with DFT-D3 correction). Single-point energy calculations were performed for all structures using DLPNO-CCSD(T)/aug-cc-pVTZ with tightPNO. Further analysis of the structures was conducted using ESP, AIM, IGMH, and sob-EDA to gain a deeper understanding of the interactions between amino acids and SO2.
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Affiliation(s)
- Yue Yang
- College of Food Science and Technology, Shanghai Ocean University, No. 999 Hucheng Huan Road, LinGang New City, Shanghai, 201306, People's Republic of China
| | - Jialing Yu
- College of Oceanography and Ecological Science, Shanghai Ocean University, No. 999 Hucheng Huan Road, LinGang New City, Shanghai, 201306, People's Republic of China
| | - Xiankai Jiang
- School of Sciences, Changzhou Institute of Technology, Changzhou, 213032, People's Republic of China
| | - Keqiang Lai
- College of Food Science and Technology, Shanghai Ocean University, No. 999 Hucheng Huan Road, LinGang New City, Shanghai, 201306, People's Republic of China
| | - Junjian Miao
- College of Food Science and Technology, Shanghai Ocean University, No. 999 Hucheng Huan Road, LinGang New City, Shanghai, 201306, People's Republic of China.
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Kim K, Lim H, Park HS, Kang JH, Park J, Song H. Reversible sulfur dioxide capture by amino acids containing a single amino group at low sulfur dioxide concentrations. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:52013-52025. [PMID: 36823467 DOI: 10.1007/s11356-023-25982-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Accepted: 02/13/2023] [Indexed: 06/18/2023]
Abstract
SO2, an air pollutant, is harmful to human health and causes air pollution; therefore, numerous studies have focused on the development of SO2 control technologies. Although limestone- and ammonia-based absorbents have been widely used in wet desulfurization, they are difficult to regenerate and do not enable the recycling of SO2, which is a useful resource. Recently, amino acids have attracted attention as reversible SO2 absorbents because they are eco-friendly and have excellent reactivity with SO2, as well as high regeneration performance. Glycine, L-alanine, β-alanine, 4-aminobutyric acid, 5-aminovaleric acid, and 6-aminohexanoic acid were analyzed to investigate the relationship between SO2 absorption and the amino acid molecular structure using the simulated actual flue gas (200 ppmv SO2 + 13% CO2 in N2 balance). The SO2 absorption of amino acids (with the molecular structure of glycine and alkyl chains of various lengths) improved as the alkyl chain length increased, possibly owing to a decrease in the inductive effect in the molecular structure of the amino acid. Furthermore, 13C-nuclear magnetic resonance spectroscopy was conducted to analyze the SO2 absorption reaction mechanism (including the possible generation of irreversible species), and experiments involving a number of consecutive absorption-desorption cycles were used to confirm the reusability of the amino acids. The tested amino acids exhibited higher cyclic capacities compared to those of deep eutectic solvents and ionic liquids reported in the literature, thereby exhibiting excellent potential as SO2 absorbents. Thus, this study can guide the future design and development of eco-friendly SO2 absorbents.
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Affiliation(s)
- Kwanghwi Kim
- Green Materials & Processes R&D Group, Korea Institute of Industrial Technology, 55 Jongga-Ro, Jung-Gu, Ulsan, 44413, South Korea
- Department of Chemical and Biomolecular Engineering, Yonsei University, 50 Yonsei-Ro, Seodaemun-Gu, Seoul, 03722, South Korea
| | - Hyunji Lim
- Green Materials & Processes R&D Group, Korea Institute of Industrial Technology, 55 Jongga-Ro, Jung-Gu, Ulsan, 44413, South Korea
- Department of Chemical and Biomolecular Engineering, Yonsei University, 50 Yonsei-Ro, Seodaemun-Gu, Seoul, 03722, South Korea
| | - Hyun Sic Park
- Green Materials & Processes R&D Group, Korea Institute of Industrial Technology, 55 Jongga-Ro, Jung-Gu, Ulsan, 44413, South Korea
| | - Jo Hong Kang
- Green Materials & Processes R&D Group, Korea Institute of Industrial Technology, 55 Jongga-Ro, Jung-Gu, Ulsan, 44413, South Korea
- Department of Chemical and Biomolecular Engineering, Yonsei University, 50 Yonsei-Ro, Seodaemun-Gu, Seoul, 03722, South Korea
| | - Jinwon Park
- Department of Chemical and Biomolecular Engineering, Yonsei University, 50 Yonsei-Ro, Seodaemun-Gu, Seoul, 03722, South Korea
| | - Hojun Song
- Green Materials & Processes R&D Group, Korea Institute of Industrial Technology, 55 Jongga-Ro, Jung-Gu, Ulsan, 44413, South Korea.
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Lim H, Kim K, Sic Park H, Hong Kang J, Park J, Song H. Carbon Dioxide Capture in Aqueous Potassium Serinate and Piperazine Solution Using Bubbling Reactor for Membrane Contactor Applications. J IND ENG CHEM 2023. [DOI: 10.1016/j.jiec.2023.02.021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/22/2023]
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Li ZM, Gong WQ, Li JF, Zhu SX, Tao DJ, Zhou Y. Efficient and selective absorption of SO2 by low-viscosity matrine-based deep eutectic solvents. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.120521] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Xu JX, Wang LC, Wu XF. Palladium-Catalyzed Desulfonative Carbonylation of Thiosulfonates: Elimination of SO 2 and Insertion of CO. Org Lett 2022; 24:4820-4824. [PMID: 35739644 DOI: 10.1021/acs.orglett.2c01951] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A palladium-catalyzed desulfonative carbonylation of thiosulfonates has been explored. Without any additive, a series of S-aryl/alkyl benzenesulfonothioates were successfully transformed to thioesters in moderate to excellent yields by SO2 extrusion and CO insertion under the pressure of 1 bar of CO. The solvent dimethylacetamide (DMAc) facilitated this desulfonative carbonylation due to its high absorbing ability of SO2.
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Affiliation(s)
- Jian-Xing Xu
- Dalian National Laboratory for Clean Energy, Dalian Institute of Chemical Physics, Chinese Academy of Science, 116023 Dalian, Liaoning, China
| | - Le-Cheng Wang
- Dalian National Laboratory for Clean Energy, Dalian Institute of Chemical Physics, Chinese Academy of Science, 116023 Dalian, Liaoning, China
| | - Xiao-Feng Wu
- Dalian National Laboratory for Clean Energy, Dalian Institute of Chemical Physics, Chinese Academy of Science, 116023 Dalian, Liaoning, China.,Leibniz-Institut für Katalyse e.V., Albert-Einstein-Straße 29a, 18059 Rostock, Germany
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