Electromerism and linkage isomerism in biologically-relevant FeSO complexes

Deciphering the mechanism of oxygen atom transfer by non-heme MnIV-oxo species: an ab initio and DFT exploration

Oxygen atom transfer (OAT) reactions employing transition metal-oxo species have tremendous significance in homogeneous catalysis for industrial use. Understanding the structural and mechanistic aspects of OAT reactions using high-valent metal-oxo species is of great importance to fine-tune their reactivity. Herein we examine the reactivity of a non-heme high-valent oxo-manganese(iv) complex, [Mn^IVH₃buea(O)]^- towards a variety of substrates such as PPh₂Me, PPhMe₂, PCy₃, PPh₃, and PMe₃ using density functional theory as well as ab initio CASSCF/NEVPT2 methods. We have initially explored the structure and bonding of [Mn^IVH₃buea(O)]^- and its congener [Mn^IVH₃buea(S)]^-. Our calculations affirm an S = 3/2 ground state of the catalyst with the S = 5/2 and S = 1/2 excited states predicted to be too high lying in energy to participate in the reaction mechanism. Our ab initio CASSCF/NEVPT2 calculations, however, reveal a strong multi-reference character for the ground S = 3/2 state with many low-lying quartets mixing significantly with the ground state. This opens up various reaction channels, and the admixed wave-function evolves during the reaction with the excited triplet dominating the ground state wave-function at the reactant complex. Our calculations predict the following pattern of reactivity, PCy₃ < PMe₃ < PPh₃ < PPhMe₂ < PPh₂Me for the OAT reaction with the Mn^IV[double bond, length as m-dash]O species which correlates well with the experimental observations. Detailed electronic structure analysis of the transitions states reveal that these substrates react via an unusual low-energy δ-type pathway where a spin-up electron from the substrate is transferred to the δ*_x²-y² orbital of the Mn^IV[double bond, length as m-dash]O facilitated by its multi-reference character. The unusual reactivity observed here has implications in understanding the reactivity of [Mn4Ca] species in photosystem II.

Importance of the iron-sulfur component and of the siroheme modification in the resting state of sulfite reductase

The active site of sulfite reductase (SiR) consists of an unusual siroheme-Fe₄S₄ assembly coupled via a cysteinate sulfur, and serves for multi-electron reduction reactions. Clear explanations have not been demonstrated for the reasons behind the choice of siroheme (vs. other types of heme) or for the single-atom coupling to an Fe₄S₄ center (as opposed to simple adjacency or to coupling via chains consisting of more than one atom). Possible explanations for these choices have previously been invoked, relating to the control of the spin state of the substrate-binding (siro)heme iron, modulation of the trans effect of the (Fe₄S₄-bound) cysteinate, or modulation of the redox potential. Reported here is a density functional theory (DFT) investigation of the structural interplay (in terms of geometry, molecular orbitals and magnetic interactions) between the siroheme and the Fe₄S₄ center as well as the importance of the covalent modifications within siroheme compared to the more common heme b, aiming to verify the role of the siroheme modification and of the Fe₄S₄ cluster at the SiR active site, with focus on previously-formulated hypotheses (geometrical/sterics, spin state, redox and electron-transfer control). A calibration of various DFT methods/variants for the correct description of ground state spin multiplicity is performed using a set of problematic cases of bioinorganic Fe centers; out of 11 functionals tested, M06-L and B3LYP offer the best results - though none of them correctly predict the spin state for all test cases. Upon examination of the relative energies of spin states, reduction potentials, energy decomposition (electrostatic, exchange-repulsion, orbital relaxation, correlation and dispersion interactions) and Mayer bond indices in SiR models, the following main roles of the siroheme and cubane are identified: (1) the cubane cofactor decreases the reduction potential of the siroheme and stabilizes the siroheme-cysteine bond interaction, and (2) the siroheme removes the quasi-degeneracy between the intermediate and high-spin states found in ferrous systems by preserving the latter as ground state; the higher-spin preference and the increased accessibility of multiple spin states are likely to be important in selective binding of the substrate and of the subsequent reaction intermediates, and in efficient changes in redox states throughout the catalytic cycle.

Reactivity of Small Oxoacids of Sulfur

Oxidation of sulfide to sulfate is known to consist of several steps. Key intermediates in this process are the so-called small oxoacids of sulfur (SOS)—sulfenic HSOH (hydrogen thioperoxide, oxadisulfane, or sulfur hydride hydroxide) and sulfoxylic S(OH)₂ acids. Sulfur monoxide can be considered as a dehydrated form of sulfoxylic acid. Although all of these species play an important role in atmospheric chemistry and in organic synthesis, and are also invoked in biochemical processes, they are quite unstable compounds so much so that their physical and chemical properties are still subject to intense studies. It is well-established that sulfoxylic acid has very strong reducing properties, while sulfenic acid is capable of both oxidizing and reducing various substrates. Here, in this review, the mechanisms of sulfide oxidation as well as data on the structure and reactivity of small sulfur-containing oxoacids, sulfur monoxide, and its precursors are discussed.

Comparative studies of reaction of cobalamin (II) and cobinamide (II) with sulfur dioxide

The kinetics of reactions of cobalamin (II) and cobinamide (II) with sulfur dioxide was studied by UV-visible (UV-vis) spectroscopy. Reaction results in oxidation of Co(II) center and involves two aquated SO₂ moieties. The final product is suggested to be complex Co(III)-S₂O ₄^•- . The absence of corrin ring modifications during the reactions was proved.

Kinetics and mechanism of oxidation of super-reduced cobalamin and cobinamide species by thiosulfate, sulfite and dithionite

We studied the kinetics of reactions of cob(I)alamin and cob(I)inamide with thiosulfate, sulfite, and dithionite by UV-Visible (UV-Vis) and stopped-flow spectroscopy. We found that the two Co(I) species were oxidized by these sulfur-containing compounds to Co(II) forms: oxidation by excess thiosulfate leads to penta-coordinate complexes and oxidation by excess sulfite or dithionite leads to hexa-coordinate Co(II)-SO2(-) complexes. The net scheme involves transfer of three electrons in the case of oxidation by thiosulfate and one electron for oxidation by sulfite and dithionite. On the basis of kinetic data, the nature of the reactive oxidants was suggested, i.e., HS2O3(-) (for oxidation by thiosulfate), S2O5(2-), HSO3(-), and aquated SO2 (for oxidation by sulfite), and S2O4(2-) and SO2(-) (for oxidation by dithionite). No difference was observed in kinetics with cob(i)alamin or cob(i)inamide as reductants.