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Harrison RL, Rowley DL. The complete genome sequence of an alphabaculovirus from the brown tussock moth, Olene mendosa Hübner, expands our knowledge of lymantriine baculovirus diversity and evolution. Virus Genes 2022; 58:227-237. [PMID: 35380378 DOI: 10.1007/s11262-022-01899-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2022] [Accepted: 03/25/2022] [Indexed: 11/24/2022]
Abstract
The complete genome sequence was determined for an apparent alphabaculovirus isolated from larval cadavers of the brown tussock moth, Olene mendosa Hübner, collected during an epizootic in Coimbatore, India. The genome was determined to be a circular 142,291 bp molecule, and 147 ORFs and nine homologous regions were annotated for the sequence. Analysis of the sequence confirmed that this virus, Olene mendosa nucleopolyhedrovirus (OlmeNPV), was a member of genus Alphabaculovirus in family Baculoviridae. Phylogenies inferred from nucleotide and amino acid alignments indicated that OlmeNPV was part of a group of viruses that infect moths of genus Lymantria, suggesting that OlmeNPV may have shifted hosts from a Lymantria species to an ancestral Olene species at some point during its evolutionary history. OlmeNPV was most closely related to Lymantria xylina multiple nucleopolyhedrovirus isolate 5 (LyxyMNPV-5). The genomes of OlmeNPV and LyxyMNPV-5 were distinguished not only by differences in ORF content, but by a 27 kbp region of the genome that is inverted in LyxyMNPV-5 relative to OlmeNPV. Pairwise nucleotide distances between OlmeNPV and other Lymantria spp. alphabaculoviruses indicate that OlmeNPV represents a new baculovirus species.
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Affiliation(s)
- Robert L Harrison
- Invasive Insect Biocontrol and Behavior Laboratory, Beltsville Agricultural Research Center, USDA Agricultural Research Service, Beltsville, MD, 20705, USA.
| | - Daniel L Rowley
- Invasive Insect Biocontrol and Behavior Laboratory, Beltsville Agricultural Research Center, USDA Agricultural Research Service, Beltsville, MD, 20705, USA
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Tang Q, Chen F, Wu P, Qiu L, Chen H, Chen K, Li G. BmNPV infection correlates with the enhancement of the resistance of Bombyx mori cells to UV radiation. ARCHIVES OF INSECT BIOCHEMISTRY AND PHYSIOLOGY 2019; 102:e21598. [PMID: 31290186 DOI: 10.1002/arch.21598] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2019] [Revised: 05/31/2019] [Accepted: 06/18/2019] [Indexed: 06/09/2023]
Abstract
At present, the effect of ultraviolet (UV) radiation on the interaction between Bombyx mori nucleopolyhedrovirus (BmNPV) and host remains unclear. In the current study, UV treatment significantly reduced the activity of BmNPV budded viruses (BVs), and UV-damaged BmN cells were not conducive to BmNPV proliferation. BmNPV infection significantly reduced the viability of host cells, but increased the viability of high-dose UV-treated host cells. Furthermore, the quantitative reverse-transcription PCR (qPCR) results suggested that BmNPV and Bombyx mori might mutually use the same DNA repair proteins for repairing UV-induced damage and BmNPV infection promote the ability of host cells to repair UV-induced damage.
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Affiliation(s)
- Qi Tang
- Institute of Life Sciences, Jiangsu University, Zhenjiang, China
| | - Fangying Chen
- Institute of Life Sciences, Jiangsu University, Zhenjiang, China
| | - Peng Wu
- Institute of Life Sciences, Jiangsu University, Zhenjiang, China
| | - Lipeng Qiu
- Institute of Life Sciences, Jiangsu University, Zhenjiang, China
| | - Huiqing Chen
- Institute of Life Sciences, Jiangsu University, Zhenjiang, China
| | - Keping Chen
- Institute of Life Sciences, Jiangsu University, Zhenjiang, China
| | - Guohui Li
- Institute of Life Sciences, Jiangsu University, Zhenjiang, China
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3
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Oberemok VV, Laikova KV, Gal'chinsky NV, Useinov RZ, Novikov IA, Temirova ZZ, Shumskykh MN, Krasnodubets AM, Repetskaya AI, Dyadichev VV, Fomochkina II, Bessalova EY, Makalish TP, Gninenko YI, Kubyshkin AV. DNA insecticide developed from the Lymantria dispar 5.8S ribosomal RNA gene provides a novel biotechnology for plant protection. Sci Rep 2019; 9:6197. [PMID: 30996277 PMCID: PMC6470133 DOI: 10.1038/s41598-019-42688-8] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2018] [Accepted: 04/04/2019] [Indexed: 12/17/2022] Open
Abstract
Having observed how botanicals and other natural compounds are used by nature to control pests in the environment, we began investigating natural polymers, DNA and RNA, as promising tools for insect pest management. Over the last decade, unmodified short antisense DNA oligonucleotides have shown a clear potential for use as insecticides. Our research has concentrated mainly on Lymantria dispar larvae using an antisense oligoRING sequence from its inhibitor-of-apoptosis gene. In this article, we propose a novel biotechnology to protect plants from insect pests using DNA insecticide with improved insecticidal activity based on a new antisense oligoRIBO-11 sequence from the 5.8S ribosomal RNA gene. This investigational oligoRIBO-11 insecticide causes higher mortality among both L. dispar larvae grown in the lab and those collected from the forest; in addition, it is more affordable and faster acting, which makes it a prospective candidate for use in the development of a ready-to-use preparation.
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Affiliation(s)
- Volodymyr V Oberemok
- Department of Biochemistry, Taurida Academy, V.I. Vernadsky Crimean Federal University, Vernadsky Avenue 4, 295007, Simferopol, Crimea, Ukraine
| | - Kateryna V Laikova
- Medical Academy named after S.I. Georgievsky, V.I. Vernadsky Crimean Federal University, Lenin Avenue 5/7, 295051, Simferopol, Crimea, Ukraine
| | - Nikita V Gal'chinsky
- Department of Biochemistry, Taurida Academy, V.I. Vernadsky Crimean Federal University, Vernadsky Avenue 4, 295007, Simferopol, Crimea, Ukraine
| | - Refat Z Useinov
- Department of Biochemistry, Taurida Academy, V.I. Vernadsky Crimean Federal University, Vernadsky Avenue 4, 295007, Simferopol, Crimea, Ukraine
| | - Ilya A Novikov
- Department of Biochemistry, Taurida Academy, V.I. Vernadsky Crimean Federal University, Vernadsky Avenue 4, 295007, Simferopol, Crimea, Ukraine
| | - Zenure Z Temirova
- Department of Biochemistry, Taurida Academy, V.I. Vernadsky Crimean Federal University, Vernadsky Avenue 4, 295007, Simferopol, Crimea, Ukraine
| | - Maksym N Shumskykh
- Department of Biochemistry, Taurida Academy, V.I. Vernadsky Crimean Federal University, Vernadsky Avenue 4, 295007, Simferopol, Crimea, Ukraine.
| | - Alisa M Krasnodubets
- Department of Biochemistry, Taurida Academy, V.I. Vernadsky Crimean Federal University, Vernadsky Avenue 4, 295007, Simferopol, Crimea, Ukraine
| | - Anna I Repetskaya
- Botanical Garden named after N.V. Bagrov, V.I. Vernadsky Crimean Federal University, Vernadsky Avenue 4, 295007, Simferopol, Crimea, Ukraine
| | - Valeriy V Dyadichev
- Engineering Center, V.I. Vernadsky Crimean Federal University, Vernadsky Avenue 4, 295007, Simferopol, Crimea, Ukraine
| | - Iryna I Fomochkina
- Medical Academy named after S.I. Georgievsky, V.I. Vernadsky Crimean Federal University, Lenin Avenue 5/7, 295051, Simferopol, Crimea, Ukraine
| | - Evgenia Y Bessalova
- Medical Academy named after S.I. Georgievsky, V.I. Vernadsky Crimean Federal University, Lenin Avenue 5/7, 295051, Simferopol, Crimea, Ukraine
| | - Tatiana P Makalish
- Medical Academy named after S.I. Georgievsky, V.I. Vernadsky Crimean Federal University, Lenin Avenue 5/7, 295051, Simferopol, Crimea, Ukraine
| | - Yuri I Gninenko
- All-Russian Research Institute for Silviculture and Mechanization of Forestry, Institutskaya Street 15, 141200, Pushkino, Russia
| | - Anatoly V Kubyshkin
- Medical Academy named after S.I. Georgievsky, V.I. Vernadsky Crimean Federal University, Lenin Avenue 5/7, 295051, Simferopol, Crimea, Ukraine
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Krejmer-Rabalska M, Rabalski L, Lobo de Souza M, Moore SD, Szewczyk B. New Method for Differentiation of Granuloviruses (Betabaculoviruses) Based on Multitemperature Single Stranded Conformational Polymorphism. Int J Mol Sci 2017; 19:ijms19010083. [PMID: 29283392 PMCID: PMC5796033 DOI: 10.3390/ijms19010083] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2017] [Revised: 12/20/2017] [Accepted: 12/23/2017] [Indexed: 12/15/2022] Open
Abstract
Baculoviruses have been used as biopesticides for decades. Recently, due to the excessive use of chemical pesticides there is a need for finding new agents that may be useful in biological protection. Sometimes few isolates or species are discovered in one host. In the past few years, many new baculovirus species have been isolated from environmental samples, thoroughly characterized and thanks to next generation sequencing methods their genomes are being deposited in the GenBank database. Next generation sequencing (NGS) methodology is the most certain way of detection, but it has many disadvantages. During our studies, we have developed a method based on Polymerase chain reaction (PCR) followed by Multitemperature Single Stranded Conformational Polymorphism (MSSCP) which allows for distinguishing new granulovirus isolates in only a few hours and at low-cost. On the basis of phylogenetic analysis of betabaculoviruses, representative species have been chosen. The alignment of highly conserved genes—granulin and late expression factor-9, was performed and the degenerate primers were designed to amplify the most variable, short DNA fragments flanked with the most conserved sequences. Afterwards, products of PCR reaction were analysed by MSSCP technique. In our opinion, the proposed method may be used for screening of new isolates derived from environmental samples.
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Affiliation(s)
- Martyna Krejmer-Rabalska
- Department of Recombinant Vaccines, Intercollegiate Faculty of Biotechnology University of Gdansk and Medical University of Gdansk, 80-807 Gdansk, Poland.
| | - Lukasz Rabalski
- Department of Recombinant Vaccines, Intercollegiate Faculty of Biotechnology University of Gdansk and Medical University of Gdansk, 80-807 Gdansk, Poland.
| | - Marlinda Lobo de Souza
- Embrapa Recursos Genéticos e Biotecnologia, Parque Estacao Biológica, 70770-900 Brasilia, Brazil.
| | - Sean D Moore
- Citrus Research International (CRI), P.O. Box 20285, Humewood 6013, Port Elizabeth, South Africa.
- Department of Zoology and Entomology, Rhodes University, P.O. Box 94, Grahamstown 6140, South Africa.
| | - Boguslaw Szewczyk
- Department of Recombinant Vaccines, Intercollegiate Faculty of Biotechnology University of Gdansk and Medical University of Gdansk, 80-807 Gdansk, Poland.
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Oberemok VV, Laikova KV, Zaitsev AS, Shumskykh MN, Kasich IN, Gal'chinsky NV, Bekirova VV, Makarov VV, Agranovsky AA, Gushchin VA, Zubarev IV, Kubyshkin AV, Fomochkina II, Gorlov MV, Skorokhod OA. Molecular Alliance of Lymantria dispar Multiple Nucleopolyhedrovirus and a Short Unmodified Antisense Oligonucleotide of Its Anti-Apoptotic IAP-3 Gene: A Novel Approach for Gypsy Moth Control. Int J Mol Sci 2017; 18:E2446. [PMID: 29149051 PMCID: PMC5713413 DOI: 10.3390/ijms18112446] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2017] [Revised: 11/11/2017] [Accepted: 11/15/2017] [Indexed: 12/12/2022] Open
Abstract
Baculovirus IAP (inhibitor-of-apoptosis) genes originated by capture of host genes. Unmodified short antisense DNA oligonucleotides (oligoDNAs) from baculovirus IAP genes can down-regulate specific gene expression profiles in both baculovirus-free and baculovirus-infected insects. In this study, gypsy moth (Lymantria dispar) larvae infected with multiple nucleopolyhedrovirus (LdMNPV), and LdMNPV-free larvae, were treated with oligoDNA antisense to the RING (really interesting new gene) domain of the LdMNPV IAP-3 gene. The results with respect to insect mortality, biomass accumulation, histological studies, RT-PCR, and analysis of DNA apoptotic fragmentation suggest that oligoRING induced increased apoptotic processes in both LdMNPV-free and LdMNPV-infected insect cells, but were more pronounced in the latter. These data open up possibilities for promising new routes of insect pest control using antisense phosphodiester DNA oligonucleotides.
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Affiliation(s)
- Volodymyr V Oberemok
- Taurida Academy, Department of Biochemistry, V.I. Vernadsky Crimean Federal University, Simferopol 295007, Republic of Crimea.
| | - Kateryna V Laikova
- Medical Academy, Department of Biochemistry, V.I. Vernadsky Crimean Federal University, Simferopol 295006, Republic of Crimea.
| | - Aleksei S Zaitsev
- Taurida Academy, Department of Biochemistry, V.I. Vernadsky Crimean Federal University, Simferopol 295007, Republic of Crimea.
| | - Maksym N Shumskykh
- Taurida Academy, Department of Biochemistry, V.I. Vernadsky Crimean Federal University, Simferopol 295007, Republic of Crimea.
| | - Igor N Kasich
- Medical Academy, Department of Pathological Anatomy, V.I. Vernadsky Crimean Federal University, Simferopol 295006, Republic of Crimea.
| | - Nikita V Gal'chinsky
- Taurida Academy, Department of Biochemistry, V.I. Vernadsky Crimean Federal University, Simferopol 295007, Republic of Crimea.
| | - Viktoriya V Bekirova
- Taurida Academy, Department of Biochemistry, V.I. Vernadsky Crimean Federal University, Simferopol 295007, Republic of Crimea.
| | - Valentin V Makarov
- Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow 119991, Russia.
| | - Alexey A Agranovsky
- Department of Virology, Lomonosov Moscow State University, Moscow 119991, Russia.
- Center of Bioengineering, Russian Academy of Sciences, Moscow 117312, Russia.
| | - Vladimir A Gushchin
- Department of Virology, Lomonosov Moscow State University, Moscow 119991, Russia.
- Translational Biomedicine Laboratory, N. F. Gamaleya Federal Research Centre for Epidemiology and Microbiology, Moscow 123098, Russia.
| | - Ilya V Zubarev
- Institute of Natural Sciences, Ural Federal University, Chelyabinsk 620083, Russia.
| | - Anatoly V Kubyshkin
- Medical Academy, Department of General and Clinical Pathophysiology, V.I. Vernadsky Crimean Federal University, Simferopol 295006, Republic of Crimea.
| | - Iryna I Fomochkina
- Medical Academy, Department of General and Clinical Pathophysiology, V.I. Vernadsky Crimean Federal University, Simferopol 295006, Republic of Crimea.
| | - Mikhail V Gorlov
- Department of Polymer Chemistry, Mendeleev University of Chemical Technology of Russia, Moscow 125047, Russia.
| | - Oleksii A Skorokhod
- University of Torino, 10124 Torino, Italy.
- Department of Molecular Biosciences, The Wenner-Gren Institute, Stockholm University, 10691 Stockholm, Sweden.
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Tang Q, Wu P, Hu Z, Yang Y, Qiu L, Liu H, Zhu S, Guo Z, Xia H, Chen K, Li G. Evidence for the role of BmNPV Bm65 protein in the repair of ultraviolet-induced DNA damage. J Invertebr Pathol 2017; 149:82-86. [PMID: 28797905 DOI: 10.1016/j.jip.2017.08.004] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2017] [Revised: 07/31/2017] [Accepted: 08/05/2017] [Indexed: 12/13/2022]
Abstract
It is unclear how, or to what extent, baculovirus DNA that has been damaged by ultraviolet (UV) light is repaired during infection and replication. In our previous study, expression of Bombyx mori nucleopolyhedrovirus (BmNPV) ORF Bm65, a homolog of Autographa californica multiple nucleopolyhedrovirus (AcMNPV) ac79, correlated with decreased inactivation of virus by UV irradiation. In the current study, we accumulated more evidence pointing to a role for Bm65 in repair of UV-induced DNA damage. The localization of Bm65 was studied using enhanced green fluorescent protein (EGFP) fusion constructs expressed in BmN cells transfected with a Bm65 expression plasmid. The results indicate that Bm65-EGFP accumulates in the nucleus. A host cell reactivation assay showed that Bm65 significantly increased the expression of UV-damaged mCherry reporter gene. An assay measuring cyclobutane pyrimidine dimers (CPDs) in UV-irradiated BmN cells found that CPD quantity was decreased in cells transfected with a Bm65 expression plasmid. We also showed that after UVC treatment, the viability of Bm65-transfected cells was higher than that of egfp-transfected cells. These results suggest that Bm65 may be involved in the repair of baculovirus DNA that has been damaged by UV light.
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Affiliation(s)
- Qi Tang
- Institute of Life Sciences, Jiangsu University, 301# Xuefu Road, Zhenjiang 212013, China
| | - Peng Wu
- Institute of Life Sciences, Jiangsu University, 301# Xuefu Road, Zhenjiang 212013, China
| | - Zhaoyang Hu
- Institute of Life Sciences, Jiangsu University, 301# Xuefu Road, Zhenjiang 212013, China
| | - Yanhua Yang
- Institute of Life Sciences, Jiangsu University, 301# Xuefu Road, Zhenjiang 212013, China
| | - Lipeng Qiu
- Institute of Life Sciences, Jiangsu University, 301# Xuefu Road, Zhenjiang 212013, China
| | - Hanqing Liu
- Center for Nano Drug/Gene Delivery and Tissue Engineering, Jiangsu University, 301# Xuefu Road, Zhenjiang 212013, China
| | - Shanying Zhu
- School of the Environment and Safety Engineering, Jiangsu University, 301# Xuefu Road, Zhenjiang 212013, China
| | - Zhongjian Guo
- Institute of Life Sciences, Jiangsu University, 301# Xuefu Road, Zhenjiang 212013, China
| | - Hengchuan Xia
- Institute of Life Sciences, Jiangsu University, 301# Xuefu Road, Zhenjiang 212013, China
| | - Keping Chen
- Institute of Life Sciences, Jiangsu University, 301# Xuefu Road, Zhenjiang 212013, China.
| | - Guohui Li
- Institute of Life Sciences, Jiangsu University, 301# Xuefu Road, Zhenjiang 212013, China.
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Complete Genome Sequence of Lymantria dispar multiple nucleopolyhedrovirus Isolated in Southwestern Poland. GENOME ANNOUNCEMENTS 2016; 4:4/6/e01422-16. [PMID: 28007858 PMCID: PMC5180386 DOI: 10.1128/genomea.01422-16] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We report here the complete genomic sequence of Polish alphabaculovirus isolated from dead gypsy moth caterpillars. Its genome structure and G+C content indicate that it is a Lymantria dispar multiple nucleopolyhedrovirus (LdMNPV) strain which possesses the shortest sequence among eight other (similar to reference sequence AF081810) LdMNPV sequences available in GenBank; it is 159,729 bp long.
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