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Liu Y, Li T, Zhu H, Cao L, Liang L, Liu D, Shen Q. Methionine inducing carbohydrate esterase secretion of Trichoderma harzianum enhances the accessibility of substrate glycosidic bonds. Microb Cell Fact 2024; 23:120. [PMID: 38664812 PMCID: PMC11046756 DOI: 10.1186/s12934-024-02394-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2024] [Accepted: 04/16/2024] [Indexed: 04/28/2024] Open
Abstract
BACKGROUND The conversion of plant biomass into biochemicals is a promising way to alleviate energy shortage, which depends on efficient microbial saccharification and cellular metabolism. Trichoderma spp. have plentiful CAZymes systems that can utilize all-components of lignocellulose. Acetylation of polysaccharides causes nanostructure densification and hydrophobicity enhancement, which is an obstacle for glycoside hydrolases to hydrolyze glycosidic bonds. The improvement of deacetylation ability can effectively release the potential for polysaccharide degradation. RESULTS Ammonium sulfate addition facilitated the deacetylation of xylan by inducing the up-regulation of multiple carbohydrate esterases (CE3/CE4/CE15/CE16) of Trichoderma harzianum. Mainly, the pathway of ammonium-sulfate's cellular assimilates inducing up-regulation of the deacetylase gene (Thce3) was revealed. The intracellular metabolite changes were revealed through metabonomic analysis. Whole genome bisulfite sequencing identified a novel differentially methylated region (DMR) that existed in the ThgsfR2 promoter, and the DMR was closely related to lignocellulolytic response. ThGsfR2 was identified as a negative regulatory factor of Thce3, and methylation in ThgsfR2 promoter released the expression of Thce3. The up-regulation of CEs facilitated the substrate deacetylation. CONCLUSION Ammonium sulfate increased the polysaccharide deacetylation capacity by inducing the up-regulation of multiple carbohydrate esterases of T. harzianum, which removed the spatial barrier of the glycosidic bond and improved hydrophilicity, and ultimately increased the accessibility of glycosidic bond to glycoside hydrolases.
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Affiliation(s)
- Yang Liu
- Key Lab of Organic-Based Fertilizers of China and Jiangsu Provincial Key Lab for Solid Organic Waste Utilization, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China
- College of Resource and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China
| | - Tuo Li
- Key Lab of Organic-Based Fertilizers of China and Jiangsu Provincial Key Lab for Solid Organic Waste Utilization, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China
- College of Resource and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China
| | - Han Zhu
- Key Lab of Organic-Based Fertilizers of China and Jiangsu Provincial Key Lab for Solid Organic Waste Utilization, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China
- College of Resource and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China
| | - Linhua Cao
- Key Lab of Organic-Based Fertilizers of China and Jiangsu Provincial Key Lab for Solid Organic Waste Utilization, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China
- College of Resource and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China
| | - Lebin Liang
- Key Lab of Organic-Based Fertilizers of China and Jiangsu Provincial Key Lab for Solid Organic Waste Utilization, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China
- College of Resource and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China
| | - Dongyang Liu
- Key Lab of Organic-Based Fertilizers of China and Jiangsu Provincial Key Lab for Solid Organic Waste Utilization, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
- College of Resource and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
| | - Qirong Shen
- Key Lab of Organic-Based Fertilizers of China and Jiangsu Provincial Key Lab for Solid Organic Waste Utilization, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China
- College of Resource and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China
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Camargo AF, Bonatto C, Scapini T, Klanovicz N, Tadioto V, Cadamuro RD, Bazoti SF, Kubeneck S, Michelon W, Reichert Júnior FW, Mossi AJ, Alves Júnior SL, Fongaro G, Treichel H. Fungus-based bioherbicides on circular economy. Bioprocess Biosyst Eng 2023; 46:1729-1754. [PMID: 37743409 DOI: 10.1007/s00449-023-02926-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2023] [Accepted: 09/06/2023] [Indexed: 09/26/2023]
Abstract
This review aimed to show that bioherbicides are possible in organic agriculture as natural compounds from fungi and metabolites produced by them. It is discussed that new formulations must be developed to improve field stability and enable the commercialization of microbial herbicides. Due to these bottlenecks, it is crucial to advance the bioprocesses behind the formulation and fermentation of bio-based herbicides, scaling up, strategies for field application, and the potential of bioherbicides in the global market. In this sense, it proposed insights for modern agriculture based on sustainable development and circular economy, precisely the formulation, scale-up, and field application of microbial bioherbicides.
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Affiliation(s)
- Aline Frumi Camargo
- Graduate Program in Biotechnology and Biosciences, Federal University of Santa Catarina, Florianópolis, Brazil
- Laboratory of Microbiology and Bioprocesses, Federal University of Fronteira Sul, Erechim, Brazil
| | - Charline Bonatto
- Laboratory of Microbiology and Bioprocesses, Federal University of Fronteira Sul, Erechim, Brazil
| | - Thamarys Scapini
- Department of Bioprocess Engineering and Biotechnology, Federal University of Paraná, Curitiba, Brazil
| | - Natalia Klanovicz
- Research Group in Advanced Oxidation Processes (AdOx), Department of Chemical Engineering, University of São Paulo, São Paulo, Brazil
| | - Viviani Tadioto
- Graduate Program in Biotechnology and Biosciences, Federal University of Santa Catarina, Florianópolis, Brazil
| | - Rafael Dorighello Cadamuro
- Graduate Program in Biotechnology and Biosciences, Federal University of Santa Catarina, Florianópolis, Brazil
| | - Suzana Fátima Bazoti
- Department of Chemical and Food Engineering, Federal University of Santa Catarina, Florianópolis, Brazil
| | - Simone Kubeneck
- Laboratory of Microbiology and Bioprocesses, Federal University of Fronteira Sul, Erechim, Brazil
| | | | | | - Altemir José Mossi
- Laboratory of Agroecology, Federal University of Fronteira Sul, Erechim, Brazil
| | | | - Gislaine Fongaro
- Graduate Program in Biotechnology and Biosciences, Federal University of Santa Catarina, Florianópolis, Brazil
| | - Helen Treichel
- Graduate Program in Biotechnology and Biosciences, Federal University of Santa Catarina, Florianópolis, Brazil.
- Laboratory of Microbiology and Bioprocesses, Federal University of Fronteira Sul, Erechim, Brazil.
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Kumar S, Masurkar P, Sravani B, Bag D, Sharma KR, Singh P, Korra T, Meena M, Swapnil P, Rajput VD, Minkina T. A review on phytotoxicity and defense mechanism of silver nanoparticles (AgNPs) on plants. JOURNAL OF NANOPARTICLE RESEARCH 2023; 25:54. [DOI: 10.1007/s11051-023-05708-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2022] [Accepted: 03/05/2023] [Indexed: 06/18/2023]
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