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For: MacDougall DD, Gonzalez RL. Translation initiation factor 3 regulates switching between different modes of ribosomal subunit joining. J Mol Biol 2014;427:1801-18. [PMID: 25308340 DOI: 10.1016/j.jmb.2014.09.024] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2014] [Revised: 09/22/2014] [Accepted: 09/24/2014] [Indexed: 11/30/2022]
Number Cited by Other Article(s)
1
Hassan A, Pinkas M, Yaeshima C, Ishino S, Uchiumi T, Ito K, Demo G. Novel archaeal ribosome dimerization factor facilitating unique 30S-30S dimerization. Nucleic Acids Res 2025;53:gkae1324. [PMID: 39797736 PMCID: PMC11724365 DOI: 10.1093/nar/gkae1324] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2024] [Revised: 12/17/2024] [Accepted: 12/30/2024] [Indexed: 01/13/2025]  Open
2
Gentry RC, Ide NA, Comunale VM, Hartwick EW, Kinz-Thompson CD, Gonzalez RL. The mechanism of mRNA cap recognition. Nature 2025;637:736-743. [PMID: 39663447 DOI: 10.1038/s41586-024-08304-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2023] [Accepted: 10/29/2024] [Indexed: 12/13/2024]
3
Gentry RC, Ide NA, Comunale VM, Hartwick EW, Kinz-Thompson CD, Gonzalez RL. The mechanism of mRNA activation. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.11.15.567265. [PMID: 38014128 PMCID: PMC10680758 DOI: 10.1101/2023.11.15.567265] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/29/2023]
4
Ray KK, Kinz-Thompson CD, Fei J, Wang B, Lin Q, Gonzalez RL. Entropic control of the free-energy landscape of an archetypal biomolecular machine. Proc Natl Acad Sci U S A 2023;120:e2220591120. [PMID: 37186858 PMCID: PMC10214133 DOI: 10.1073/pnas.2220591120] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2022] [Accepted: 04/17/2023] [Indexed: 05/17/2023]  Open
5
Singh J, Mishra RK, Ayyub SA, Hussain T, Varshney U. The initiation factor 3 (IF3) residues interacting with initiator tRNA elbow modulate the fidelity of translation initiation and growth fitness in Escherichia coli. Nucleic Acids Res 2022;50:11712-11726. [PMID: 36399509 PMCID: PMC9723500 DOI: 10.1093/nar/gkac1053] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2022] [Revised: 10/18/2022] [Accepted: 10/24/2022] [Indexed: 11/19/2022]  Open
6
Ray S, Dandpat SS, Chatterjee S, Walter NG. Precise tuning of bacterial translation initiation by non-equilibrium 5'-UTR unfolding observed in single mRNAs. Nucleic Acids Res 2022;50:8818-8833. [PMID: 35892287 PMCID: PMC9410914 DOI: 10.1093/nar/gkac635] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2021] [Revised: 06/15/2022] [Accepted: 07/14/2022] [Indexed: 11/21/2022]  Open
7
Gamper H, Li H, Masuda I, Miklos Robkis D, Christian T, Conn AB, Blaha G, Petersson EJ, Gonzalez RL, Hou YM. Insights into genome recoding from the mechanism of a classic +1-frameshifting tRNA. Nat Commun 2021;12:328. [PMID: 33436566 PMCID: PMC7803779 DOI: 10.1038/s41467-020-20373-z] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2020] [Accepted: 11/30/2020] [Indexed: 12/18/2022]  Open
8
Kaledhonkar S, Fu Z, Caban K, Li W, Chen B, Sun M, Gonzalez RL, Frank J. Late steps in bacterial translation initiation visualized using time-resolved cryo-EM. Nature 2019;570:400-404. [PMID: 31108498 PMCID: PMC7060745 DOI: 10.1038/s41586-019-1249-5] [Citation(s) in RCA: 79] [Impact Index Per Article: 13.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2018] [Accepted: 05/08/2019] [Indexed: 12/02/2022]
9
Rodnina MV. Translation in Prokaryotes. Cold Spring Harb Perspect Biol 2018;10:cshperspect.a032664. [PMID: 29661790 DOI: 10.1101/cshperspect.a032664] [Citation(s) in RCA: 163] [Impact Index Per Article: 23.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
10
Wu H, Zhao Y, Du Y, Miao S, Liu J, Li Y, Caiyin Q, Qiao J. Quantitative proteomics of Lactococcus lactis F44 under cross-stress of low pH and lactate. J Dairy Sci 2018;101:6872-6884. [DOI: 10.3168/jds.2018-14594] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2018] [Accepted: 04/13/2018] [Indexed: 12/12/2022]
11
Goyal A, Belardinelli R, Rodnina MV. Non-canonical Binding Site for Bacterial Initiation Factor 3 on the Large Ribosomal Subunit. Cell Rep 2018;20:3113-3122. [PMID: 28954228 DOI: 10.1016/j.celrep.2017.09.012] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2017] [Revised: 08/25/2017] [Accepted: 09/03/2017] [Indexed: 01/01/2023]  Open
12
Lai WJC, Ermolenko DN. Ensemble and single-molecule FRET studies of protein synthesis. Methods 2017;137:37-48. [PMID: 29247758 DOI: 10.1016/j.ymeth.2017.12.007] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2017] [Revised: 11/30/2017] [Accepted: 12/11/2017] [Indexed: 11/29/2022]  Open
13
Caban K, Pavlov M, Ehrenberg M, Gonzalez RL. A conformational switch in initiation factor 2 controls the fidelity of translation initiation in bacteria. Nat Commun 2017;8:1475. [PMID: 29133802 PMCID: PMC5684235 DOI: 10.1038/s41467-017-01492-6] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2017] [Accepted: 09/21/2017] [Indexed: 11/09/2022]  Open
14
Roy B, Liu Q, Shoji S, Fredrick K. IF2 and unique features of initiator tRNAfMet help establish the translational reading frame. RNA Biol 2017;15:604-613. [PMID: 28914580 DOI: 10.1080/15476286.2017.1379636] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]  Open
15
Potoyan DA, Wolynes PG. Stochastic dynamics of genetic broadcasting networks. Phys Rev E 2017;96:052305. [PMID: 29347696 PMCID: PMC5807099 DOI: 10.1103/physreve.96.052305] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2017] [Indexed: 11/07/2022]
16
Translational Control of the SigR-Directed Oxidative Stress Response in Streptomyces via IF3-Mediated Repression of a Noncanonical GTC Start Codon. mBio 2017;8:mBio.00815-17. [PMID: 28611250 PMCID: PMC5472188 DOI: 10.1128/mbio.00815-17] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]  Open
17
Hussain T, Llácer JL, Wimberly BT, Kieft JS, Ramakrishnan V. Large-Scale Movements of IF3 and tRNA during Bacterial Translation Initiation. Cell 2016;167:133-144.e13. [PMID: 27662086 PMCID: PMC5037330 DOI: 10.1016/j.cell.2016.08.074] [Citation(s) in RCA: 117] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2016] [Revised: 08/04/2016] [Accepted: 08/23/2016] [Indexed: 11/19/2022]
18
Hu Y, Bernal A, Bullard JM, Zhang Y. Solution structure of protein synthesis initiation factor 1 from Pseudomonas aeruginosa. Protein Sci 2016;25:2290-2296. [PMID: 27636899 DOI: 10.1002/pro.3042] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2016] [Revised: 09/08/2016] [Accepted: 09/09/2016] [Indexed: 11/09/2022]
19
Rodnina MV. The ribosome in action: Tuning of translational efficiency and protein folding. Protein Sci 2016;25:1390-406. [PMID: 27198711 DOI: 10.1002/pro.2950] [Citation(s) in RCA: 113] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2016] [Revised: 05/17/2016] [Accepted: 05/18/2016] [Indexed: 12/28/2022]
20
Liu Q, Fredrick K. Intersubunit Bridges of the Bacterial Ribosome. J Mol Biol 2016;428:2146-64. [PMID: 26880335 DOI: 10.1016/j.jmb.2016.02.009] [Citation(s) in RCA: 63] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2015] [Revised: 01/29/2016] [Accepted: 02/05/2016] [Indexed: 02/02/2023]
21
Initiation factor 2 stabilizes the ribosome in a semirotated conformation. Proc Natl Acad Sci U S A 2015;112:15874-9. [PMID: 26668356 DOI: 10.1073/pnas.1520337112] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
22
Goyal A, Belardinelli R, Maracci C, Milón P, Rodnina MV. Directional transition from initiation to elongation in bacterial translation. Nucleic Acids Res 2015;43:10700-12. [PMID: 26338773 PMCID: PMC4678851 DOI: 10.1093/nar/gkv869] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2015] [Accepted: 08/18/2015] [Indexed: 01/21/2023]  Open
23
Roles of helix H69 of 23S rRNA in translation initiation. Proc Natl Acad Sci U S A 2015;112:11559-64. [PMID: 26324939 DOI: 10.1073/pnas.1507703112] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
24
Gualerzi CO, Pon CL. Initiation of mRNA translation in bacteria: structural and dynamic aspects. Cell Mol Life Sci 2015;72:4341-67. [PMID: 26259514 PMCID: PMC4611024 DOI: 10.1007/s00018-015-2010-3] [Citation(s) in RCA: 103] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2015] [Revised: 07/28/2015] [Accepted: 07/30/2015] [Indexed: 01/12/2023]
25
Caban K, Gonzalez RL. The emerging role of rectified thermal fluctuations in initiator aa-tRNA- and start codon selection during translation initiation. Biochimie 2015;114:30-8. [PMID: 25882682 DOI: 10.1016/j.biochi.2015.04.001] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2014] [Accepted: 04/02/2015] [Indexed: 11/30/2022]
26
Wang J, Caban K, Gonzalez RL. Ribosomal initiation complex-driven changes in the stability and dynamics of initiation factor 2 regulate the fidelity of translation initiation. J Mol Biol 2015;427:1819-34. [PMID: 25596426 DOI: 10.1016/j.jmb.2014.12.025] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2014] [Revised: 12/12/2014] [Accepted: 12/29/2014] [Indexed: 12/23/2022]
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