High sensitivity of graphdiyne nanoflake toward detection of phosgene, thiophosgene and phosogenoxime; a first-principles study

Hex-star phosphorene nanosheets as sequencing material for DNA/RNA strands - A first-principles investigation

In this study, we utilised hex-star phosphorene as the main detecting material to identify the nucleobases. Nucleobases, being crucial carriers of hereditary information are identified through specific hydrogen bonding and steric interactions such as adenine pairing with thymine (or) uracil and guanine pairing with cytosine. The stable hex-star phosphorene possesses negative formation energy of -5.194 eV. The hex-star phosphorene exhibits a semiconductor nature with an energy band gap of 1.658 eV, which is deployed as the adsorbing substrate for nucleobases. Based on the Mulliken charge analysis, adsorption energy, relative band gap variation, and the detection efficiency of hex-star phosphorene towards nucleobases are examined. The outcome confirms the physisorption of nucleobases on hex-star phosphorene and strongly supports that hex-star phosphorene can be used as sequencing material for DNA and RNA.

Recent progress on the synthesis, properties and applications of antimonene - A mini-review

The recent advancement in group VA monolayer and few-layer materials leads to fascinating applications. In this mini-review, we present the state-of-the-art in the synthesis of antimonene, its properties and various applications. Besides, the electronic properties of antimonene depend on its allotropes. Furthermore, we studied the electronic properties of δ, ε, and twisted-θ antimonene nanosheets, nanoribbons, and nanoring, and the results are reported. Moreover, the structural stability and electronic properties of antimonene is influenced by its allotrope and nanostructure. The report will give insights into the synthesis, properties, applications, and future outlook of antimonene.

Graphynes and Graphdiynes for Energy Storage and Catalytic Utilization: Theoretical Insights into Recent Advances

Carbon allotropes have contributed to all aspects of people's lives throughout human history. As emerging carbon-based low-dimensional materials, graphyne family members (GYF), represented by graphdiyne, have a wide range potential applications due to their superior physical and chemical properties. In particular, graphdiyne (GDY), as the leader of the graphyne family, has been practically applied to various research fields since it was first successfully synthesized. GYF have a large surface area, both sp and sp² hybridization, and a certain band gap, which was considered to originate from the overlap of carbon 2p_z orbitals and the inhomogeneous π-bonds of carbon atoms in different hybridization forms. These properties mean GYF-based materials still have many potential applications to be developed, especially in energy storage and catalytic utilization. Since most of the GYF have yet to be synthesized and applications of successfully synthesized GYF have not been developed for a long time, theoretical results in various application fields should be shared to experimentalists to attract more intentions. In this Review, we summarized and discussed the synthesis, structural properties, and applications of GYF-based materials from the theoretical insights, hoping to provide different viewpoints and comments.

Efficient Detection of Nerve Agents through Carbon Nitride Quantum Dots: A DFT Approach

V-series nerve agents are very lethal to health and cause the inactivation of acetylcholinesterase which leads to neuromuscular paralysis and, finally, death. Therefore, rapid detection and elimination of V-series nerve agents are very important. Herein, we have carried out a theoretical investigation of carbon nitride quantum dots (C₂N) as an electrochemical sensor for the detection of V-series nerve agents, including VX, VS, VE, VG, and VM. Adsorption of V-series nerve agents on C₂N quantum dots is explored at M05-2X/6-31++G(d,p) level of theory. The level of theory chosen is quite adequate in systems describing non-bonding interactions. The adsorption behavior of nerve agents is characterized by interaction energy, non-covalent interaction (NCI), Bader's quantum theory of atoms in molecules (QTAIM), frontier molecular orbital (FMO), electron density difference (EDD), and charge transfer analysis. The computed adsorption energies of the studied complexes are in the range of -12.93 to -17.81 kcal/mol, which indicates the nerve agents are physiosorbed onto C₂N surface through non-covalent interactions. The non-covalent interactions between V-series and C₂N are confirmed through NCI and QTAIM analysis. EDD analysis is carried out to understand electron density shifting, which is further validated by natural bond orbital (NBO) analysis. FMO analysis is used to estimate the changes in energy gap of C₂N on complexation through HOMO-LUMO energies. These findings suggest that C₂N surface is highly selective toward VX, and it might be a promising candidate for the detection of V-series nerve agents.

Graphdiyne applications in sensors: A bibliometric analysis and literature review

Graphdiyne is a two-dimensional carbon nanomaterial synthesized artificially in 2010. Its outstanding performance is considered to have great potential in different fields. This article summarizes the work of graphdiyne in the sensing field by literature summary and bibliometrics analysis. The development of graphdiyne in the field of sensing has gone through a process from theoretical calculation to experimental verification. Especially in the last three years, there has been very rapid development. The theoretical calculations suggest that graphdiyne is an excellent gas sensing material, but there is little experimental evidence in this direction. On the contrary, graphdiyne has been widely reported in the field of electrochemical sensing. At the same time, graphdiyne can also be used as a molecular switch for DNA sequencing. Fluorescent sensors based on graphdiyne have also been reported. In general, the potential of graphdiyne in sensing still needs to be explored. Current research results do not show that graphdiyne has irreplaceable advantages in sensing. The bibliometric analysis used in this review also provides cooperative network analysis and co-citation analysis on this topic. This provides a reference for the audience wishing to undertake research on the topic. In addition, according to the analysis, we also listed the direction that which this field deserves attention in the future.

Metal-Decorated Phthalocyanine Monolayer as a Potential Gas Sensing Material for Phosgene: A First-Principles Study

Research into a gas sensing material with excellent performance to detect or remove toxic phosgene (COCl₂) is of great significance to environmental and biological protection. In the present work, the adsorption performance of COCl₂ on pristine phthalocyanine (Pc) and metal-decorated Pc (MePc, Me = Cu, Ga, and Ru) monolayers was studied by first-principles calculations. The results show that the absorption process of COCl₂ on pristine Pc and CuPc both belong to physisorption, indicating that they are not suitable gas sensing materials for COCl₂. When Pc sheets are decorated by Ga and Ru atoms, the adsorption of COCl₂ is changed into chemisorption, and the corresponding adsorption energies are -0.57 and -0.50 eV for GaPc and RuPc, respectively. The microcosmic mechanism between COCl₂ and adsorbents (GaPc, RuPc) was clarified by the analysis of the density of states, the charge density difference, and the Hirshfeld charge. In addition, the COCl₂ adsorption results in a significant conductivity variation of the RuPc monolayer, demonstrating it exhibits a high sensitivity to the COCl₂ molecule. Meanwhile, quick desorption processes were noticed at various temperatures for the COCl₂/RuPc system. Consequently, the RuPc monolayer can be considered as a potential candidate for phosgene sensors because of the moderate adsorption strength, high sensitivity, and fast desorption speed.

Potential sensing of toxic chemical warfare agents (CWAs) by twisted nanographenes: A first principle approach

The toxic chemical warfare agents (CWAs) are extremely harmful to the living organisms. Their efficient detection and removal in a limited time span are essential for the human health and environmental security. Twisted nanographenes have great applications in the fields of energy storage and optoelectronics, but their use as sensors is rarely described. Therefore, we have explored the sensitivity and selectivity of twisted nanographene analogues (C₃₂H₁₆, C₆₄H₃₂) towards selected toxic CWAs, including phosgene, thiophosgene and formaldehyde. The interaction between CWAs and twisted nanographenes is mainly interpreted by considering the optimized geometries, adsorption energies, natural bond orbital (NBO), frontier molecular orbital (FMO), non-covalent interaction (NCI) and quantum theory of atoms in molecules (QTAIM) analyses. The structural geometries show that the central octagon of twisted nanographenes is the most favorable site of interaction. The interaction energies reveal the physisorption of selected CWAs on tNGs surface. The average energy gap change (%E_H-L^a) and % sensitivity are quantitatively determined to evaluate the sensing capability of the twisted nanographenes. Among the selected CWAs molecules, the sensitivity of tNG analogues (C₃₂H₁₆ and C₆₄H₃₂) is superior towards thiophosgene (ThP), which is revealed by the high interaction energies of -8.19 and - 12.17 kcal/mol, respectively. This theoretical study will help experimentalists to devise novel sensors based on twisted nanographenes for the detection of toxic CWAs which may also work efficiently under the humid conditions.

Inclusive DFT insight into sensing mechanism of cyclotetrapyrole towards lung irritants

The development of smart sensing devices for toxic analytes detection especially lung irritants is much essential. The cyclic conducting polymers having infinite π-conjugation are proved to be highly sensitive for toxic analytes. Herein, by using the DFT approach, we investigated the sensing mechanism of cyclotetrapyrole (CTPy) for accurate detection of phosgene, diphosgene, chloropicrin and chlorine at the B3LYP-D3/6-31 + G (d, p) level. The calculated interaction energies show the physisorption of analytes over the CTPy surface. Natural bond orbital (NBO) and charge decomposition (CDA) analyses predict charge transfer interactions in the complexes. The reduced density gradient (RDG) approach reveals that hydrogen bonding interactions dominate in the complexes. The sensitivity of CTPy towards lung irritants is further illustrated by the reduction in HOMO-LUMO energy gaps, red shifting of [Formula: see text] in UV-Visible spectra. Density of state (DOS) analysis affirm that enhanced conductivity upon complexation is due to the origination of new energy states in occupied and virtual orbitals nearer to the Fermi level. Moreover, PDOS spectra show that CTPy primarily contributes to the energy of HOMO. The outcome of the current study depicts appreciable sensitivity of CTPy towards lung irritants. Moreover, the competing role of naturally occurring atmospheric water is also investigated. We believe that the upshot of the current findings and their forecasts will provide useful guidelines for an experimentalist to design highly sensitive sensors for toxic analytes using CTPy. HIGHLIGHTS: • The highest QNBO transfer towards the analyte (- 0.121) is seen in the chlorine@CTPy complex. • The highest reduction in Eg (61%) between occupied and virtual orbitals is noticed in chlorine@CTPy. • The orbital overlap results in a 41% red shifting of [Formula: see text] in chlorine@CTPy. • Cyclotetrapyrole is highly sensitive for chlorine.

Electrochemical sensing behavior of graphdiyne nanoflake towards uric acid: a quantum chemical approach

Though the gas sensing applications of graphdiyne have widely reported; however, the biosensing utility of graphdiyne needs to be explored. This study deals with the sensitivity of graphdiyne nanoflake (GDY) towards the uric acid (UA) within the density functional framework. The uric acid is allowed to interact with graphdiyne nanoflake from all the possible orientations. Based on these interacting geometries, the complexes are differentiated with naming, i.e., UA1@GDY, UA2@GDY, UA3@GDY, and UA4@GDY (Fig. 1). The essence of interface interactions of UA on GDY is derived by computing geometric, energetic, electronic, and optical properties. The adsorbing affinity of complexes is evaluated at ωB97XD/6-31 + G(d, p) level of theory. The stabilities of the complexes are quantified through the interaction energies (E_int) with reasonable accuracy. The calculated E_int of the UA1@GDY, UA2@GDY, UA3@GDY, and UA4@GDY complexes are - 31.13, - 25.87, - 20.59, and - 16.54 kcal/mol, respectively. In comparison with geometries, it is revealed that the higher stability of complexes is facilitated by π-π stacking. Other energetic analyses including symmetry adopted perturbation theory (SAPT), noncovalent interaction index (NCI), and quantum theory of atoms in molecule (QTAIM) provide the evidence of dominating dispersion energy in stabilizing the resultant complexes. The HOMO-LUMO energies, NBO charge transfer, and UV-vis analysis justify the higher electronic transition in UA1@GDY, plays a role of higher sensitivity of GDY towards the π-stacked geometries over all other possible interaction orientations. The present findings bestow the higher sensitivity of GDY towards uric acid via π-stacking interactions. Fig. 1 Optimized geometries (with interaction distances in Å) of UA@GDY complexes.

Effective adsorption of A-series chemical warfare agents on graphdiyne nanoflake: a DFT study

Chemical warfare agents (CWAs) are highly poisonous and their presence may cause diverse effects not only on living organisms but also on environment. Therefore, their detection and removal in a short time span is very important. In this regard, here the utility of graphdiyne (GDY) nanoflake is studied theoretically as an electrochemical sensor material for the hazardous CWAs including A-230, A-232, and A-234. Herein, we explain the phenomenon of adsorption of A-series CWAs on GDY nanoflake within the density functional theory (DFT) framework. The characterisation of adsorption is based on optimised geometries, BSSE-corrected energies, SAPT0, RDG, FMO, CHELPG charge transfer, QTAIM and UV-Vis analyses. The calculated counterpoise adsorption energies for reported complexes range from - 13.70 to - 17.19 kcal mol^-1. These adsorption energies show that analytes are physiosorbed onto GDY which usually takes place through noncovalent interactions. The noncovalent adsorption of CWAs on GDY is also attributed by the SAPT0, RDG and QTAIM analyses. These properties also reveal that dispersion factors dominate in the complexes among many noncovalent components (exchange, induction, electrostatic, steric and repulsion). In order to estimate the sensitivity of GDY, the %sensitivity and average energy gap variations are quantitatively measured by energies of HOMO and LUMO orbitals. In terms of adsorption affinity of GDY, UV-Vis analysis, CHELPG charge transfer and DOS analyses depict an appreciable response towards these toxic CWAs. Graphical abstract.

Adsorption studies of nucleobases on ε-arsenene nanosheet based on first-principles research

The electronic attributes and energetics of ε-arsenene nanosheet (ε-As) are explored with regard to the density functional theory basis. Initially, based on formation energy (-3.715 eV/atom), we ensured the structural firmness of ε-As. The ε-As is used as a base substrate to adsorb nucleobases viz., adenine (A), guanine (G), thymine (T), cytosine (C) & uracil (U). The surface adsorption of nucleobases on ε-As is analysed based on band structure, the density of states, adsorption energy, energy gap variation & charge transfer. Besides, we observed the exothermic nature of binding energy (ranging from -0.453 eV to -0.819 eV) upon nucleobase adsorption on ε-As. Also, the energy gap variation & charge transfer takes place owing to adsorption of nucleobases on the ε-As sheet. The present report reveals the adsorption of nucleobases on ε-arsenene nanosheet.

Superhalogen doping: a new and effective approach to design materials with excellent static and dynamic NLO responses

The first-ever example where superhalogen doping alone is introduced as a new and effective approach to impart large NLO responses.