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Wang L, Elliott AB, Moore SD, Beran GJO, Hartman JD, Harper JK. Modeling Small Structural and Environmental Differences in Solids with 15 N NMR Chemical Shift Tensors. Chemphyschem 2021; 22:1008-1017. [PMID: 33604988 DOI: 10.1002/cphc.202000985] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2020] [Revised: 01/28/2021] [Indexed: 11/09/2022]
Abstract
The ability to theoretically predict accurate NMR chemical shifts in solids is increasingly important due to the role such shifts play in selecting among proposed model structures. Herein, two theoretical methods are evaluated for their ability to assign 15 N shifts from guanosine dihydrate to one of the two independent molecules present in the lattice. The NMR data consist of 15 N shift tensors from 10 resonances. Analysis using periodic boundary or fragment methods consider a benchmark dataset to estimate errors and predict uncertainties of 5.6 and 6.2 ppm, respectively. Despite this high accuracy, only one of the five sites were confidently assigned to a specific molecule of the asymmetric unit. This limitation is not due to negligible differences in experimental data, as most sites exhibit differences of >6.0 ppm between pairs of resonances representing a given position. Instead, the theoretical methods are insufficiently accurate to make assignments at most positions.
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Affiliation(s)
- Luther Wang
- Department of Chemistry and Biochemistry, Brigham Young University, 84602, Provo, UT, USA
| | - Alexander B Elliott
- Department of Chemistry, University of Central Florida, 4111 Libra Drive, 32816, Orlando, FL, USA
| | - Sean D Moore
- Burnett School of Biomedical Sciences, University of Central Florida, 4110 Libra Drive, 32816, Orlando, FL, USA
| | - Gregory J O Beran
- Department of Chemistry, University of California, 92521, Riverside, CA, USA
| | - Joshua D Hartman
- Department of Chemistry, Mt. San Jacinto College, 92583, San Jacinto, CA, USA
| | - James K Harper
- Department of Chemistry and Biochemistry, Brigham Young University, 84602, Provo, UT, USA
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Hodgkinson P. NMR crystallography of molecular organics. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2020; 118-119:10-53. [PMID: 32883448 DOI: 10.1016/j.pnmrs.2020.03.001] [Citation(s) in RCA: 65] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2019] [Revised: 02/25/2020] [Accepted: 03/13/2020] [Indexed: 06/11/2023]
Abstract
Developments of NMR methodology to characterise the structures of molecular organic structures are reviewed, concentrating on the previous decade of research in which density functional theory-based calculations of NMR parameters in periodic solids have become widespread. With a focus on demonstrating the new structural insights provided, it is shown how "NMR crystallography" has been used in a spectrum of applications from resolving ambiguities in diffraction-derived structures (such as hydrogen atom positioning) to deriving complete structures in the absence of diffraction data. As well as comprehensively reviewing applications, the different aspects of the experimental and computational techniques used in NMR crystallography are surveyed. NMR crystallography is seen to be a rapidly maturing subject area that is increasingly appreciated by the wider crystallographic community.
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Affiliation(s)
- Paul Hodgkinson
- Department of Chemistry, Durham University, Stockton Road, Durham DH1 3LE, UK.
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Quantification of santonin in eight species of Artemisia from Kazakhstan by means of HPLC-UV: Method development and validation. PLoS One 2017; 12:e0173714. [PMID: 28301522 PMCID: PMC5354383 DOI: 10.1371/journal.pone.0173714] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2016] [Accepted: 02/24/2017] [Indexed: 11/25/2022] Open
Abstract
Santonin, a powerful anthelmintic drug that was formely used to treat worms, is Artemisia cina's main constituent. However, due to its toxicity to humans, it is no longer in use. Kazakhstan is looking to introduce this plant as an anthelmintic drug for veterinary purposes, despite the known toxic properties of the santonin. The objective of this study was to develop a fast and specific method for the identification of santonin and its precise quantitation using HPLC-UV in order to avoid unnecessary intoxication, which is paramount for the development of veterinary medicines. The results obtained showed that santonin appears at around 5.7 minutes in this very reliable HPLC method. The validation of the method was performed by the investigation of parameters such as precision, accuracy, reproducibility and recovery. The method was used to identify and quantify santonin in leaves of A. scoparia, A. foetida, A. gmelinni, A. schrenkiana, A. frigida, A. sublesingiana, A terra-albae, and A. absinthium from Kazakhstan as well as in three different extracts of leaves of A. cina. This study has provided a faster and simpler method for the identification and quantification of this compound in other species of Artemisia of economic importance.
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Urbanova M, Gajdosova M, Steinhart M, Vetchy D, Brus J. Molecular-Level Control of Ciclopirox Olamine Release from Poly(ethylene oxide)-Based Mucoadhesive Buccal Films: Exploration of Structure–Property Relationships with Solid-State NMR. Mol Pharm 2016; 13:1551-63. [DOI: 10.1021/acs.molpharmaceut.6b00035] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Martina Urbanova
- Institute
of Macromolecular Chemistry, Academy of Sciences of the Czech Republic, Heyrovsky sq. 2, 162 06 Prague 6, Czech Republic
| | - Marketa Gajdosova
- Veterinary and Pharmaceutical University, Faculty of Pharmacy, Department of Pharmaceutics, Palacky Street 1946/1, 612 42 Brno, Czech Republic
| | - Miloš Steinhart
- Institute
of Macromolecular Chemistry, Academy of Sciences of the Czech Republic, Heyrovsky sq. 2, 162 06 Prague 6, Czech Republic
| | - David Vetchy
- Veterinary and Pharmaceutical University, Faculty of Pharmacy, Department of Pharmaceutics, Palacky Street 1946/1, 612 42 Brno, Czech Republic
| | - Jiri Brus
- Institute
of Macromolecular Chemistry, Academy of Sciences of the Czech Republic, Heyrovsky sq. 2, 162 06 Prague 6, Czech Republic
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Dudek MK, Jeziorna A, Potrzebowski MJ. Computational and experimental study of reversible hydration/dehydration processes in molecular crystals of natural products – a case of catechin. CrystEngComm 2016. [DOI: 10.1039/c6ce00932h] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Urbanova M, Sturcova A, Kredatusova J, Brus J. Structural insight into the physical stability of amorphous Simvastatin dispersed in pHPMA: Enhanced dynamics and local clustering as evidenced by solid-state NMR and Raman spectroscopy. Int J Pharm 2015; 478:464-75. [DOI: 10.1016/j.ijpharm.2014.12.007] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2014] [Revised: 12/04/2014] [Accepted: 12/05/2014] [Indexed: 11/29/2022]
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7
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Policianova O, Brus J, Hruby M, Urbanova M, Zhigunov A, Kredatusova J, Kobera L. Structural diversity of solid dispersions of acetylsalicylic acid as seen by solid-state NMR. Mol Pharm 2014; 11:516-30. [PMID: 24417442 DOI: 10.1021/mp400495h] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Solid dispersions of active pharmaceutical ingredients are of increasing interest due to their versatile use. In the present study polyvinylpyrrolidone (PVP), poly[N-(2-hydroxypropyl)-metacrylamide] (pHPMA), poly(2-ethyl-2-oxazoline) (PEOx), and polyethylene glycol (PEG), each in three Mw, were used to demonstrate structural diversity of solid dispersions. Acetylsalicylic acid (ASA) was used as a model drug. Four distinct types of the solid dispersions of ASA were created using a freeze-drying method: (i) crystalline solid dispersions containing nanocrystalline ASA in a crystalline PEG matrix; (ii) amorphous glass suspensions with large ASA crystallites embedded in amorphous pHPMA; (iii) solid solutions with molecularly dispersed ASA in rigid amorphous PVP; and (iv) nanoheterogeneous solid solutions/suspensions containing nanosized ASA clusters dispersed in a semiflexible matrix of PEOx. The obtained structural data confirmed that the type of solid dispersion can be primarily controlled by the chemical constitutions of the applied polymers, while the molecular weight of the polymers had no detectable impact. The molecular structure of the prepared dispersions was characterized using solid-state NMR, wide-angle X-ray scattering (WAXS), and differential scanning calorimetry (DSC). By applying various (1)H-(13)C and (1)H-(1)H correlation experiments combined with T1((1)H) and T1ρ((1)H) relaxation data, the extent of the molecular mixing was determined over a wide range of distances, from intimate intermolecular contacts (0.1-0.5 nm) up to the phase-separated nanodomains reaching ca. 500 nm. Hydrogen-bond interactions between ASA and polymers were probed by the analysis of (13)C and (15)N CP/MAS NMR spectra combined with the measurements of (1)H-(15)N dipolar profiles. Overall potentialities and limitations of individual experimental techniques were thoroughly evaluated.
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Affiliation(s)
- Olivia Policianova
- Institute of Macromolecular Chemistry , Academy of Sciences of the Czech Republic, Heyrovského nám. 2, 162 06 Praha 6, Czech Republic
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Harper JK, Tishler D, Richardson D, Lokvam J, Pendrill R, Widmalm G. Solid-State NMR Characterization of the Molecular Conformation in Disordered Methyl α-l-Rhamnofuranoside. J Phys Chem A 2013; 117:5534-41. [DOI: 10.1021/jp4036666] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- James K. Harper
- Department of Chemistry, University of Central Florida, 4000
Central Florida Boulevard, Orlando, Florida 32816, United States
| | - Derek Tishler
- Department of Physics, University of Central Florida, Orlando,
Florida 32816, United States
| | - David Richardson
- Department of Chemistry, University of Central Florida, 4000
Central Florida Boulevard, Orlando, Florida 32816, United States
| | - John Lokvam
- Department of Biology, University of California Berkeley, Berkeley,
California 94720, United States
| | - Robert Pendrill
- Department of Organic
Chemistry, Arrhenius Laboratory, Stockholm University, S-106 91 Stockholm, Sweden
| | - Göran Widmalm
- Department of Organic
Chemistry, Arrhenius Laboratory, Stockholm University, S-106 91 Stockholm, Sweden
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Wang WD, Gao X, Strohmeier M, Wang W, Bai S, Dybowski C. Solid-State NMR Studies of Form I of Atorvastatin Calcium. J Phys Chem B 2012; 116:3641-9. [DOI: 10.1021/jp212074a] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Wei David Wang
- State Key Laboratory of Applied
Organic Chemistry, College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou, Gansu, 730000, China
| | - Xudong Gao
- State Key Laboratory of Applied
Organic Chemistry, College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou, Gansu, 730000, China
| | - Mark Strohmeier
- Product Development, GlaxoSmithKline, Inc., 709 Swedeland Road, King of
Prussia, Pennsylvania 19406, United States
| | - Wei Wang
- State Key Laboratory of Applied
Organic Chemistry, College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou, Gansu, 730000, China
| | - Shi Bai
- State Key Laboratory of Applied
Organic Chemistry, College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou, Gansu, 730000, China
- Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, United
States
| | - Cecil Dybowski
- Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, United
States
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Nomura K, Lintuluoto M, Morigaki K. Hydration and temperature dependence of 13C and 1H NMR spectra of the DMPC phospholipid membrane and complete resonance assignment of its crystalline state. J Phys Chem B 2011; 115:14991-5001. [PMID: 22044314 DOI: 10.1021/jp208958a] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Inhomogeneous line broadening due to conformational distributions of molecules is one of the troublesome problems in solid-state NMR spectroscopy. The best possible way to avoid it is to crystallize the sample. Here, we present a highly resolved (13)C cross-polarization (CP) magic angle spinning (MAS) NMR spectrum of the highly ordered crystalline 1,2-dimyrystoyl-sn-glycero-3-phosphocholine (DMPC) and completely assigned it using two-dimensional (2D) solid-state NMR spectra, dipolar heteronuclear correlation (HETCOR) spectra, scalar heteronuclear J coupling based chemical shift correlation (MAS-J-HMQC) spectra, and Dipolar Assisted Rotational Resonance (DARR) spectra. A comparison between assigned chemical shift values by solid-state NMR in this study and the calculated chemical shift values for X-ray crystal DMPC structures shows good agreement, indicating that the two isomers in the crystalline DMPC take the same conformation as the X-ray crystal structure. The phase diagram of the low hydration level of DMPC (3 ≤ n(W) ≤ 12) determined by (1)H and (13)C NMR spectra indicates that DMPC takes a crystalline state only in a very narrow region around n(W) = 4 and T < 313 K. These findings provide us with conformational information on crystalline DMPC and the physical properties of DMPC at a low hydration level and can possibly help us obtain a highly resolved solid-state NMR spectrum of microcrystalline membrane-associated protein samples.
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Affiliation(s)
- Kaoru Nomura
- Suntory Foundation for Life Sciences, Bioorganic Research Institute, Mishima-Gun, Osaka, Japan.
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MacDonald JL, Werner-Zwanziger U, Chen B, Zwanziger JW, Forgeron D. A 43Ca and 13C NMR study of the chemical interaction between poly(ethylene-vinyl acetate) and white cement during hydration. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2011; 40:78-83. [PMID: 21813268 DOI: 10.1016/j.ssnmr.2011.07.001] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2011] [Revised: 07/09/2011] [Accepted: 07/11/2011] [Indexed: 05/31/2023]
Abstract
(43)Ca and (13)C NMR methods were used to study the chemical interaction of poly(ethylene-vinyl acetate) (PEVAc) admixture in commercial-grade white cement. From (43)Ca NMR it is shown both that PEVAc induces modest changes in the hydrated cement structure, and that hydrated commercial cement is significantly more complex than models that have been used for its structure in past work. The (13)C NMR results show that the PEVAc hydrolysis occurs early in the cement hydration acceleration period, with a rate well-fit by an exponential decay using a time constant of 6±1 days.
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Harper JK, Doebbler JA, Jacques E, Grant DM, Von Dreele RB. A Combined Solid-State NMR and Synchrotron X-ray Diffraction Powder Study on the Structure of the Antioxidant (+)-Catechin 4.5-hydrate. J Am Chem Soc 2010; 132:2928-37. [DOI: 10.1021/ja907671p] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- James K. Harper
- Department of Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, and Argonne National Laboratory, Advanced Photon Source, 9700 South Cass Avenue, Argonne, Illinois 60439
| | - Jennifer A. Doebbler
- Department of Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, and Argonne National Laboratory, Advanced Photon Source, 9700 South Cass Avenue, Argonne, Illinois 60439
| | - Elisabeth Jacques
- Department of Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, and Argonne National Laboratory, Advanced Photon Source, 9700 South Cass Avenue, Argonne, Illinois 60439
| | - David M. Grant
- Department of Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, and Argonne National Laboratory, Advanced Photon Source, 9700 South Cass Avenue, Argonne, Illinois 60439
| | - Robert B. Von Dreele
- Department of Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, and Argonne National Laboratory, Advanced Photon Source, 9700 South Cass Avenue, Argonne, Illinois 60439
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Stein RS, Elena B, Emsley L. Improving resolution in proton solid-state NMR by removing nitrogen-14 residual dipolar broadening. Chem Phys Lett 2008. [DOI: 10.1016/j.cplett.2008.05.008] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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