1
|
Sidabras JW, Duan J, Winkler M, Happe T, Hussein R, Zouni A, Suter D, Schnegg A, Lubitz W, Reijerse EJ. Extending electron paramagnetic resonance to nanoliter volume protein single crystals using a self-resonant microhelix. SCIENCE ADVANCES 2019; 5:eaay1394. [PMID: 31620561 PMCID: PMC6777973 DOI: 10.1126/sciadv.aay1394] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2019] [Accepted: 09/06/2019] [Indexed: 05/26/2023]
Abstract
Electron paramagnetic resonance (EPR) spectroscopy on protein single crystals is the ultimate method for determining the electronic structure of paramagnetic intermediates at the active site of an enzyme and relating the magnetic tensor to a molecular structure. However, crystals of dimensions typical for protein crystallography (0.05 to 0.3mm) provide insufficient signal intensity. In this work, we present a microwave self-resonant microhelix for nanoliter samples that can be implemented in a commercial X-band (9.5 GHz) EPR spectrometer. The self-resonant microhelix provides a measured signal-to-noise improvement up to a factor of 28 with respect to commercial EPR resonators. This work opens up the possibility to use advanced EPR techniques for studying protein single crystals of dimensions typical for x-ray crystallography. The technique is demonstrated by EPR experiments on single crystal [FeFe]-hydrogenase (Clostridium pasteurianum; CpI) with dimensions of 0.3 mm by 0.1 mm by 0.1 mm, yielding a proposed g-tensor orientation of the Hox state.
Collapse
Affiliation(s)
- Jason W. Sidabras
- Max Planck Institute for Chemical Energy Conversion, Stiftstraße 34-36, 45470 Mülheim an der Ruhr, Germany
| | - Jifu Duan
- AG Photobiotechnologie, Ruhr-Universität Bochum, Universitätsstraße 150, 44780 Bochum, Germany
| | - Martin Winkler
- AG Photobiotechnologie, Ruhr-Universität Bochum, Universitätsstraße 150, 44780 Bochum, Germany
| | - Thomas Happe
- AG Photobiotechnologie, Ruhr-Universität Bochum, Universitätsstraße 150, 44780 Bochum, Germany
| | - Rana Hussein
- Institut für Biologie, Humboldt-Universität zu Berlin, Philippstraße 13, 10115 Berlin, Germany
| | - Athina Zouni
- Institut für Biologie, Humboldt-Universität zu Berlin, Philippstraße 13, 10115 Berlin, Germany
| | - Dieter Suter
- Experimentelle Physik, Technische Universität Dortmund, Emil-Figge-Straße 50, 44221 Dortmund, Germany
| | - Alexander Schnegg
- Max Planck Institute for Chemical Energy Conversion, Stiftstraße 34-36, 45470 Mülheim an der Ruhr, Germany
| | - Wolfgang Lubitz
- Max Planck Institute for Chemical Energy Conversion, Stiftstraße 34-36, 45470 Mülheim an der Ruhr, Germany
| | - Edward J. Reijerse
- Max Planck Institute for Chemical Energy Conversion, Stiftstraße 34-36, 45470 Mülheim an der Ruhr, Germany
| |
Collapse
|
2
|
Hyde JS, Mett RR. EPR UNIFORM FIELD SIGNAL ENHANCEMENT BY DIELECTRIC TUBES IN CAVITIES. APPLIED MAGNETIC RESONANCE 2017; 48:1185-1204. [PMID: 29332997 PMCID: PMC5761080 DOI: 10.1007/s00723-017-0935-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2017] [Revised: 08/23/2017] [Indexed: 06/02/2023]
Abstract
The dielectric tube resonator (DTR) for EPR spectroscopy is introduced. It is defined as a metallic cylindrical TE011 microwave cavity that contains a dielectric tube centered on the axis of the cylinder. Contour plots of dimensions of the metallic cylinder to achieve resonance at 9.5 GHz are shown for quartz, sapphire, and rutile tubes as a function of wall thickness and average radius. These contour plots were developed using analytical equations and confirmed by finite element modeling. They can be used in two ways: design of the metallic cylinder for use at 9.5 GHz that incorporates a readily available tube such as a sapphire tube intended for NMR, or design of a custom procured tube for optimized performance for specific sample-size constraints. The charts extend to the limiting condition where the dielectric fills the tube. However, the structure at this limit is not a dielectric resonator due to the metal wall and does not radiate. In addition, the uniform field (UF) DTR is introduced. Development of the UF resonator starting with a dielectric tube resonator is shown. The diameter of the tube remains constant along the cavity axis, and the diameter of the cylindrical metallic enclosure increases at the ends of the cavity to satisfy the uniform field condition. This structure has advantages over the previously developed UF TE011 resonators: higher resonator efficiency parameter Λ, convenient overall size when using sapphire tubes, and higher quality data for small samples. The DTR and UF DTR structures fill the gap between free space and dielectric resonator limits in a continuous manner.
Collapse
Affiliation(s)
- James S. Hyde
- Department of Biophysics, Medical College of Wisconsin, 8701 Watertown Plan Road, Milwaukee, WI 53226
| | - Richard R. Mett
- Department of Biophysics, Medical College of Wisconsin, 8701 Watertown Plan Road, Milwaukee, WI 53226
- Department of Physics and Chemistry, Milwaukee School of Engineering, 1025 North Broadway, Milwaukee, WI 53202
| |
Collapse
|
3
|
Ivanov MY, Nadolinny VA, Bagryanskaya EG, Grishin YA, Fedin MV, Veber SL. Bismuth germanate as a perspective material for dielectric resonators in EPR spectroscopy. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2016; 271:83-89. [PMID: 27569694 DOI: 10.1016/j.jmr.2016.08.009] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2016] [Revised: 08/16/2016] [Accepted: 08/17/2016] [Indexed: 06/06/2023]
Abstract
High purity bismuth germanate (Bi4(GeO4)3, BGO) is proposed and implemented as an alternative material for dielectric EPR resonators. A significant improvement of the absolute sensitivity can be readily achieved by substituting the alumina insert (ring) by BGO-made one in commercially available X-band EPR probeheads. Four BGO dielectric inserts of 2, 3, 4 and 5mm inner diameter (ID) were made for comparison with standard 5mm inner diameter alumina insert. All inserts were introduced into commercial Bruker EPR resonator ER 4118X-MD-5W1, and their performance was investigated. The Q-values of empty resonators, B1 saturation curves and continuous wave EPR spectra of DPPH (2,2-diphenyl-1-picrylhydrazyl) were measured and analyzed in a temperature range 6-300K. BGO-made resonators were found superior in several important aspects. The background signals arising from BGO are much weaker compared to those of alumina at B=0-0.6T and T=6-300K; this is especially useful for measuring weak signals in the half-field region, as well as those near the central field. Moreover, mechanical properties of BGO allow easy fabrication of dielectric bodies having various shapes and sizes; in particular, small BGO resonators (e.g. ID=2 or 3mm) strongly enhance sensitivity for small samples due to increase of the filling factor. All these advantages have been also inspected in the pulse mode, proving that higher B1 fields and better filling factors can be achieved, contributing to the overall enhancement of the performance.
Collapse
Affiliation(s)
- Mikhail Y Ivanov
- International Tomography Center, SB RAS, Novosibirsk 630090, Russia; Novosibirsk State University, Novosibirsk 630090, Russia
| | | | - Elena G Bagryanskaya
- Novosibirsk State University, Novosibirsk 630090, Russia; N.N. Vorozhtsov Novosibirsk Institute of Organic Chemistry, SB RAS, Novosibirsk 630090, Russia
| | - Yuriy A Grishin
- Voevodsky Institute of Chemical Kinetics and Combustion, SB RAS, Novosibirsk 630090, Russia
| | - Matvey V Fedin
- International Tomography Center, SB RAS, Novosibirsk 630090, Russia; Novosibirsk State University, Novosibirsk 630090, Russia
| | - Sergey L Veber
- International Tomography Center, SB RAS, Novosibirsk 630090, Russia; Novosibirsk State University, Novosibirsk 630090, Russia.
| |
Collapse
|
4
|
Bluemink JJ, Raaijmakers AJE, Koning W, Andreychenko A, Rivera DS, Luijten PR, Klomp DWJ, van den Berg CAT. Dielectric waveguides for ultrahigh field magnetic resonance imaging. Magn Reson Med 2015; 76:1314-24. [DOI: 10.1002/mrm.26007] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2014] [Revised: 09/11/2015] [Accepted: 09/12/2015] [Indexed: 11/09/2022]
Affiliation(s)
- Johanna J. Bluemink
- UMC Utrecht Cancer Center / UMC Utrecht Center for Imaging Sciences, Department of Radiotherapy; University Medical Center Utrecht; The Netherlands
| | - Alexander J. E. Raaijmakers
- UMC Utrecht Cancer Center / UMC Utrecht Center for Imaging Sciences, Department of Radiotherapy; University Medical Center Utrecht; The Netherlands
| | - Wouter Koning
- UMC Utrecht Cancer Center / UMC Utrecht Center for Imaging Sciences, Department of Radiotherapy; University Medical Center Utrecht; The Netherlands
| | - Anna Andreychenko
- UMC Utrecht Cancer Center / UMC Utrecht Center for Imaging Sciences, Department of Radiotherapy; University Medical Center Utrecht; The Netherlands
| | - Debra S. Rivera
- UMC Utrecht Cancer Center / UMC Utrecht Center for Imaging Sciences, Department of Radiotherapy; University Medical Center Utrecht; The Netherlands
| | - Peter R. Luijten
- UMC Utrecht Cancer Center / UMC Utrecht Center for Imaging Sciences, Department of Radiotherapy; University Medical Center Utrecht; The Netherlands
| | - Dennis W. J. Klomp
- UMC Utrecht Cancer Center / UMC Utrecht Center for Imaging Sciences, Department of Radiotherapy; University Medical Center Utrecht; The Netherlands
| | - Cornelis A. T. van den Berg
- UMC Utrecht Cancer Center / UMC Utrecht Center for Imaging Sciences, Department of Radiotherapy; University Medical Center Utrecht; The Netherlands
| |
Collapse
|
5
|
Webb A. Cavity- and waveguide-resonators in electron paramagnetic resonance, nuclear magnetic resonance, and magnetic resonance imaging. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2014; 83:1-20. [PMID: 25456314 DOI: 10.1016/j.pnmrs.2014.09.003] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2014] [Revised: 09/30/2014] [Accepted: 09/30/2014] [Indexed: 06/04/2023]
Abstract
Cavity resonators are widely used in electron paramagnetic resonance, very high field magnetic resonance microimaging and also in high field human imaging. The basic principles and designs of different forms of cavity resonators including rectangular, cylindrical, re-entrant, cavity magnetrons, toroidal cavities and dielectric resonators are reviewed. Applications in EPR and MRI are summarized, and finally the topic of traveling wave MRI using the magnet bore as a waveguide is discussed.
Collapse
Affiliation(s)
- Andrew Webb
- C.J. Gorter Center for High Field MRI, Department of Radiology, Leiden University Medical Center, Leiden, The Netherlands.
| |
Collapse
|
6
|
Elnaggar SY, Tervo R, Mattar SM. Optimal dielectric and cavity configurations for improving the efficiency of electron paramagnetic resonance probes. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2014; 245:50-57. [PMID: 24937043 DOI: 10.1016/j.jmr.2014.05.011] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2014] [Revised: 05/24/2014] [Accepted: 05/26/2014] [Indexed: 06/03/2023]
Abstract
An electron paramagnetic resonance (EPR) spectrometer's lambda efficiency parameter (Λ) is one of the most important parameters that govern its sensitivity. It is studied for an EPR probe consisting of a dielectric resonator (DR) in a cavity (CV). Expressions for Λ are derived in terms of the probe's individual DR and CV components, Λ1 and Λ2 respectively. Two important cases are considered. In the first, a probe consisting of a CV is improved by incorporating a DR. The sensitivity enhancement depends on the relative rather than the absolute values of the individual components. This renders the analysis general. The optimal configuration occurs when the CV and DR modes are nearly degenerate. This configuration guarantees that the probe can be easily coupled to the microwave bridge while maintaining a large Λ. It is shown that for a lossy CV with a small quality factor Q2, one chooses a DR that has the highest filling factor, η1, regardless of its Λ1 and Q1. On the other hand, if the CV has a large Q2, the optimum DR is the one which has the highest Λ1. This is regardless of its η1 and relative dielectric constant, ɛr. When the quality factors of both the CV and DR are comparable, the lambda efficiency is reduced by a factor of 2. Thus the signal intensity for an unsaturated sample is cut in half. The second case is the design of an optimum shield to house a DR. Besides preventing radiation leakage, it is shown that for a high loss DR, the shield can actually boost Λ above the DR value. This can also be very helpful for relatively low efficiency dielectrics as well as lossy samples, such as polar liquids.
Collapse
Affiliation(s)
- Sameh Y Elnaggar
- Department of Electrical and Computer Engineering, University of New Brunswick, Fredericton, New Brunswick, E3B 5A3 Canada
| | - Richard Tervo
- Department of Electrical and Computer Engineering, University of New Brunswick, Fredericton, New Brunswick, E3B 5A3 Canada
| | - Saba M Mattar
- Department of Chemistry and Centre for Laser, Atomic and Molecular Sciences, University of New Brunswick, Fredericton, New Brunswick E3B 5A3, Canada.
| |
Collapse
|
7
|
Elnaggar SY, Tervo R, Mattar SM. Coupled modes, frequencies and fields of a dielectric resonator and a cavity using coupled mode theory. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2014; 238:1-7. [PMID: 24246950 DOI: 10.1016/j.jmr.2013.10.016] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2013] [Revised: 10/24/2013] [Accepted: 10/24/2013] [Indexed: 06/02/2023]
Abstract
Probes consisting of a dielectric resonator (DR) inserted in a cavity are important integral components of electron paramagnetic resonance (EPR) spectrometers because of their high signal-to-noise ratio. This article studies the behavior of this system, based on the coupling between its dielectric and cavity modes. Coupled-mode theory (CMT) is used to determine the frequencies and electromagnetic fields of this coupled system. General expressions for the frequencies and field distributions are derived for both the resulting symmetric and anti-symmetric modes. These expressions are applicable to a wide range of frequencies (from MHz to THz). The coupling of cavities and DRs of various sizes and their resonant frequencies are studied in detail. Since the DR is situated within the cavity then the coupling between them is strong. In some cases the coupling coefficient, κ, is found to be as high as 0.4 even though the frequency difference between the uncoupled modes is large. This is directly attributed to the strong overlap between the fields of the uncoupled DR and cavity modes. In most cases, this improves the signal to noise ratio of the spectrometer. When the DR and the cavity have the same frequency, the coupled electromagnetic fields are found to contain equal contributions from the fields of the two uncoupled modes. This situation is ideal for the excitation of the probe through an iris on the cavity wall. To verify and validate the results, finite element simulations are carried out. This is achieved by simulating the coupling between a cylindrical cavity's TE011 and the dielectric insert's TE01δ modes. Coupling between the modes of higher order is also investigated and discussed. Based on CMT, closed form expressions for the fields of the coupled system are proposed. These expressions are crucial in the analysis of the probe's performance.
Collapse
Affiliation(s)
- Sameh Y Elnaggar
- Department of Electrical and Computer Engineering, University of New Brunswick, Fredericton, New Brunswick E3B 6E2, Canada
| | - Richard Tervo
- Department of Electrical and Computer Engineering, University of New Brunswick, Fredericton, New Brunswick E3B 6E2, Canada
| | - Saba M Mattar
- Department of Chemistry and Centre for Laser, Atomic and Molecular Sciences, University of New Brunswick, Fredericton, New Brunswick E3B 6E2, Canada.
| |
Collapse
|
8
|
Mattar SM, Elnaggar SY. Analysis of two stacked cylindrical dielectric resonators in a TE₁₀₂ microwave cavity for magnetic resonance spectroscopy. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2011; 209:174-182. [PMID: 21300559 DOI: 10.1016/j.jmr.2011.01.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2010] [Revised: 01/07/2011] [Accepted: 01/07/2011] [Indexed: 05/30/2023]
Abstract
The frequency, field distributions and filling factors of a DR/TE₁₀₂ probe, consisting of two cylindrical dielectric resonators (DR1 and DR2) in a rectangular TE₁₀₂ cavity, are simulated and analyzed by finite element methods. The TE(+++) mode formed by the in-phase coupling of the TE₀₁(δ)(DR1), TE₀₁(δ)(DR2) and TE₁₀₂ basic modes, is the most appropriate mode for X-band EPR experiments. The corresponding simulated B(+++) fields of the TE(+++) mode have significant amplitudes at DR1, DR2 and the cavity's iris resulting in efficient coupling between the DR/TE₁₀₂ probe and the microwave bridge. At the experimental configuration, B(+++) in the vicinity of DR2 is much larger than that around DR1 indicating that DR1 mainly acts as a frequency tuner. In contrast to a simple microwave shield, the resonant cavity is an essential component of the probe that affects its frequency. The two dielectric resonators are always coupled and this is enhanced by the cavity. When DR1 and DR2 are close to the cavity walls, the TE(+++) frequency and B(+++) distribution are very similar to that of the empty TE₁₀₂ cavity. When all the experimental details are taken into account, the agreement between the experimental and simulated TE(+++) frequencies is excellent. This confirms that the resonating mode of the spectrometer's DR/TE₁₀₂ probe is the TE(+++) mode. Additional proof is obtained from B₁(x), which is the calculated maximum x component of B(+++). It is predominantly due to DR2 and is approximately 4.4 G. The B₁(x) maximum value of the DR/TE₁₀₂ probe is found to be slightly larger than that for a single resonator in a cavity because DR1 further concentrates the cavity's magnetic field along its x axis. Even though DR1 slightly enhances the performance of the DR/TE₁₀₂ probe its main benefit is to act as a frequency tuner. A waveguide iris can be used to over-couple the DR/TE₁₀₂ probe and lower its Q to ≈150. Under these conditions, the probe has a short dead time and a large bandwidth. The DR/TE₁₀₂ probe's calculated conversion factor is approximately three times that of a regular cavity making it a good candidate for pulsed EPR experiments.
Collapse
Affiliation(s)
- Saba M Mattar
- Department of Chemistry and Centre for Laser, Atomic and Molecule Sciences, University of New Brunswick, Fredericton, New Brunswick, Canada.
| | | |
Collapse
|
9
|
|
10
|
Golovina IS, Kolesnik SP, Geifman IN, Belous AG. Novel multisample dielectric resonators for electron paramagnetic resonance spectroscopy. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2010; 81:044702. [PMID: 20441359 DOI: 10.1063/1.3378287] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
We have developed and tested two types of novel dielectric resonators for simultaneous recording of electron paramagnetic resonance (EPR) spectra from two to four samples. The resonator of the first type contains two holes, and the other resonator contains four holes for introduction of the samples. Also, the resonator structure includes a pair of gradient coils. Dielectric resonators made of materials with high dielectric constant with low losses can be inserted into the standard EPR cavity or waveguide in the maximum microwave magnetic field. Gradient coils are located outside the cavity (or waveguide) so that their axes are parallel to the static magnetic field. Computer simulations were made to obtain microwave characteristics of the resonators such as resonant frequency, sizes, and distribution of the fields. Spacing of the point samples and optimum value of the magnetic-field gradient have been chosen correctly. The designed resonators can be applied in express analysis using EPR technique, for instance.
Collapse
Affiliation(s)
- Iryna S Golovina
- Institute of Semiconductor Physics of NAS of Ukraine, pr. Nauki 41, Kiev 03028, Ukraine
| | | | | | | |
Collapse
|