1
|
Jenne A, Soong R, Downey K, Biswas RG, Decker V, Busse F, Goerling B, Haber A, Simpson MJ, Simpson AJ. Brewing alcohol 101: An undergraduate experiment utilizing benchtop NMR for quantification and process monitoring. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2024; 62:429-438. [PMID: 38230451 DOI: 10.1002/mrc.5428] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Revised: 12/22/2023] [Accepted: 01/01/2024] [Indexed: 01/18/2024]
Abstract
In recent years there has been a renewed interest in benchtop NMR. Given their lower cost of ownership, smaller footprint, and ease of use, they are especially suited as an educational tool. Here, a new experiment targeted at upper-year undergraduates and first-year graduate students follows the conversion of D-glucose into ethanol at low-field. First, high and low-field data on D-glucose are compared and students learn both the Hz and ppm scales and how J-coupling is field-independent. The students then acquire their own quantitative NMR datasets and perform the quantification using an Electronic Reference To Access In Vivo Concentration (ERETIC) technique. To our knowledge ERETIC is not currently taught at the undergraduate level, but has an advantage in that internal standards are not required; ideal for following processes or with future use in flow-based benchtop monitoring. Using this quantitative data, students can relate a simple chemical process (fermentation) back to more complex topics such as reaction kinetics, bridging the gaps between analytical and physical chemistry. When asked to reflect on the experiment, students had an overwhelmingly positive experience, citing agreement with learning objectives, ease of understanding the protocol, and enjoyment. Each of the respondents recommended this experiment as a learning tool for others. This experiment has been outlined for other instructors to utilize in their own courses across institutions, with the hope that a continued expansion of low-field NMR will increase accessibility and learning opportunities at the undergraduate level.
Collapse
Affiliation(s)
- Amy Jenne
- Environmental NMR Center, University of Toronto Scarborough, Toronto, ON, Canada
| | - Ronald Soong
- Environmental NMR Center, University of Toronto Scarborough, Toronto, ON, Canada
| | - Katelyn Downey
- Environmental NMR Center, University of Toronto Scarborough, Toronto, ON, Canada
| | | | | | | | | | | | - Myrna J Simpson
- Environmental NMR Center, University of Toronto Scarborough, Toronto, ON, Canada
| | - Andre J Simpson
- Environmental NMR Center, University of Toronto Scarborough, Toronto, ON, Canada
| |
Collapse
|
2
|
Tayler MCD, Bodenstedt S. NMRduino: A modular, open-source, low-field magnetic resonance platform. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2024; 362:107665. [PMID: 38598992 DOI: 10.1016/j.jmr.2024.107665] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Revised: 03/06/2024] [Accepted: 03/20/2024] [Indexed: 04/12/2024]
Abstract
The NMRduino is a compact, cost-effective, sub-MHz NMR spectrometer that utilizes readily available open-source hardware and software components. One of its aims is to simplify the processes of instrument setup and data acquisition control to make experimental NMR spectroscopy accessible to a broader audience. In this introductory paper, the key features and potential applications of NMRduino are described to highlight its versatility both for research and education.
Collapse
Affiliation(s)
- Michael C D Tayler
- ICFO - Institut de Ciències Fotòniques, The Barcelona Institute of Science and Technology, 08860 Castelldefels (Barcelona), Spain.
| | - Sven Bodenstedt
- ICFO - Institut de Ciències Fotòniques, The Barcelona Institute of Science and Technology, 08860 Castelldefels (Barcelona), Spain
| |
Collapse
|
3
|
Uribe JL, Jimenez MD, Kelz JI, Liang J, Martin RW. Automated test apparatus for bench-testing the magnetic field homogeneity of NMR transceiver coils. JOURNAL OF MAGNETIC RESONANCE OPEN 2024; 18:100142. [PMID: 38444623 PMCID: PMC10914335 DOI: 10.1016/j.jmro.2023.100142] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/07/2024]
Abstract
We describe an automated hands-off bench testing method for measuring the magnetic field profile of transceiver coils for nuclear magnetic resonance (NMR). The scattering parameter (S-parameter) data is measured using a portable network analyzer, and the results are automatically exported to a computer for plotting and viewing. This assay dramatically reduces the time needed to measure the magnetic field (B1) homogeneity profile of a transceiver coil while also improving accuracy relative to manual operation. Here, we demonstrate the method on a saddle coil of a solution-state NMR probe in comparison to profiles obtained using NMR spectroscopy measurements. We also measure the axial and radial homogeneity of a variable-pitch solenoid.
Collapse
Affiliation(s)
- Jose L Uribe
- Department of Chemistry, University of California, Irvine 92697-2025
| | - Matthew D Jimenez
- Department of Chemistry, University of California, Irvine 92697-2025
| | - Jessica I Kelz
- Department of Chemistry, University of California, Irvine 92697-2025
| | - Jeanie Liang
- Department of Chemistry, University of California, Irvine 92697-2025
| | - Rachel W Martin
- Department of Chemistry, University of California, Irvine 92697-2025
- Department of Molecular Biology and Biochemistry, University of California, Irvine 92697-3900
| |
Collapse
|
4
|
Guo L, Wang H, Hao C, Chi Z, Cheng L, Yang H, Zhang J, Zhao R, Wu Y. Investigation of the soybean infiltration process utilizing low-field nuclear magnetic resonance technology. PLoS One 2024; 19:e0297756. [PMID: 38363777 PMCID: PMC10871503 DOI: 10.1371/journal.pone.0297756] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2023] [Accepted: 01/11/2024] [Indexed: 02/18/2024] Open
Abstract
This paper employs low-field nuclear magnetic resonance (LF-NMR) technology to meticulously analyze and explore the intricate soybean infiltration process. The methodology involves immersing soybeans in distilled water, with periodic implementation of Carr-Purcell-Meiboom-Gill (CPMG) pulse sequence experiments conducted at intervals of 20 to 30 minutes to determine the relaxation time T2. Currently, magnetic resonance imaging (MRI) is conducted every 30 minutes. The analysis uncovers the existence of three distinct water phases during the soybean infiltration process: bound water denoted as T21, sub-bound water represented by T22, and free water indicated as T23. The evolution of these phases unfolds as follows: bound water T21 displays a steady oscillation within the timeframe of 0 to 400 minutes; sub-bound water T22 and free water T23 exhibit a progressive pattern characterized by a rise-stable-rise trajectory. Upon scrutinizing the magnetic resonance images, it is discerned that the soybean infiltration commences at a gradual pace from the seed umbilicus. The employment of LF-NMR technology contributes significantly by affording an expeditious, non-destructive, and dynamic vantage point to observe the intricate motion of water migration during soybean infiltration. This dynamic insight into the movement of water elucidates the intricate mass transfer pathway within the soybean-water system, thus furnishing a robust scientific foundation for the optimization of processing techniques.
Collapse
Affiliation(s)
- Lisha Guo
- Department of Medical Physics, School of Medical Imaging, Hebei Medical University, Shijiazhuang, China
| | - Han Wang
- Department of Medical Imaging, Hebei General Hospital, Shijiazhuang, China
| | - Chenru Hao
- Department of Medical Physics, School of Medical Imaging, Hebei Medical University, Shijiazhuang, China
| | - Ziqiang Chi
- Department of Medical Physics, School of Medical Imaging, Hebei Medical University, Shijiazhuang, China
| | - Li Cheng
- Department of Medical Physics, School of Medical Imaging, Hebei Medical University, Shijiazhuang, China
| | - Haibo Yang
- Department of Medical Physics, School of Medical Imaging, Hebei Medical University, Shijiazhuang, China
| | - Jing Zhang
- Department of Medical Physics, School of Medical Imaging, Hebei Medical University, Shijiazhuang, China
| | - Ruibin Zhao
- Department of Medical Physics, School of Medical Imaging, Hebei Medical University, Shijiazhuang, China
| | - Yanru Wu
- Department of Medical Physics, School of Medical Imaging, Hebei Medical University, Shijiazhuang, China
| |
Collapse
|
5
|
Alsop DC, Ercan E, Girard OM, Mackay AL, Michal CA, Varma G, Vinogradov E, Duhamel G. Inhomogeneous magnetization transfer imaging: Concepts and directions for further development. NMR IN BIOMEDICINE 2023; 36:e4808. [PMID: 35916067 DOI: 10.1002/nbm.4808] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2022] [Revised: 07/27/2022] [Accepted: 07/28/2022] [Indexed: 05/23/2023]
Abstract
Off-resonance radio frequency irradiation can induce the ordering of proton spins in the dipolar fields of their neighbors, in molecules with restricted mobility. This dipolar order decays with a characteristic relaxation time, T1D , that is very different from the T1 and T2 relaxation of the nuclear alignment with the main magnetic field. Inhomogeneous magnetization transfer (ihMT) imaging is a refinement of magnetization transfer (MT) imaging that isolates the MT signal dependence on dipolar order relaxation times within motion-constrained molecules. Because T1D relaxation is a unique contrast mechanism, ihMT may enable improved characterization of tissue. Initial work has stressed the high correlation between ihMT signal and myelin density. Dipolar order relaxation appears to be much longer in membrane lipids than other molecules. Recent work has shown, however, that ihMT acquisitions may also be adjusted to emphasize different ranges of T1D . These newer approaches may be sensitive to other microstructural components of tissue. Here, we review the concepts and history of ihMT and outline the requirements for further development to realize its full potential.
Collapse
Affiliation(s)
- David C Alsop
- Department of Radiology, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, Massachusetts, USA
| | - Ece Ercan
- MR Clinical Science, Philips, Best, The Netherlands
| | | | - Alex L Mackay
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia, Canada
- Department of Radiology, University of British Columbia, Vancouver, British Columbia, Canada
| | - Carl A Michal
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia, Canada
| | - Gopal Varma
- Department of Radiology, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, Massachusetts, USA
| | - Elena Vinogradov
- Department of Radiology and Advanced Imaging Research Center, UT Southwestern Medical Center, Dallas, Texas, USA
| | | |
Collapse
|
6
|
Webb A, O'Reilly T. Tackling SNR at low-field: a review of hardware approaches for point-of-care systems. MAGMA (NEW YORK, N.Y.) 2023:10.1007/s10334-023-01100-3. [PMID: 37202656 PMCID: PMC10386948 DOI: 10.1007/s10334-023-01100-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2022] [Revised: 05/03/2023] [Accepted: 05/09/2023] [Indexed: 05/20/2023]
Abstract
OBJECTIVE To review the major hardware components of low-field point-of-care MRI systems which affect the overall sensitivity. METHODS Designs for the following components are reviewed and analyzed: magnet, RF coils, transmit/receive switches, preamplifiers, data acquisition system, and methods for grounding and mitigating electromagnetic interference. RESULTS High homogeneity magnets can be produced in a variety of different designs including C- and H-shaped as well as Halbach arrays. Using Litz wire for RF coil designs enables unloaded Q values of ~ 400 to be reached, with body loss representing about 35% of the total system resistance. There are a number of different schemes to tackle issues arising from the low coil bandwidth with respect to the imaging bandwidth. Finally, the effects of good RF shielding, proper electrical grounding, and effective electromagnetic interference reduction can lead to substantial increases in image signal-to-noise ratio. DISCUSSION There are many different magnet and RF coil designs in the literature, and to enable meaningful comparisons and optimizations to be performed it would be very helpful to determine a standardized set of sensitivity measures, irrespective of design.
Collapse
Affiliation(s)
- Andrew Webb
- Department of Radiology, C.J. Gorter MRI Center, Leiden University Medical Center, 2333 ZA, Leiden, The Netherlands.
| | - Thomas O'Reilly
- Department of Radiology, C.J. Gorter MRI Center, Leiden University Medical Center, 2333 ZA, Leiden, The Netherlands
| |
Collapse
|
7
|
Kretschmer J, David T, Dračínský M, Socha O, Jirak D, Vít M, Jurok R, Kuchař M, Císařová I, Polasek M. Paramagnetic encoding of molecules. Nat Commun 2022; 13:3179. [PMID: 35676253 PMCID: PMC9177614 DOI: 10.1038/s41467-022-30811-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Accepted: 05/10/2022] [Indexed: 11/09/2022] Open
Abstract
AbstractContactless digital tags are increasingly penetrating into many areas of human activities. Digitalization of our environment requires an ever growing number of objects to be identified and tracked with machine-readable labels. Molecules offer immense potential to serve for this purpose, but our ability to write, read, and communicate molecular code with current technology remains limited. Here we show that magnetic patterns can be synthetically encoded into stable molecular scaffolds with paramagnetic lanthanide ions to write digital code into molecules and their mixtures. Owing to the directional character of magnetic susceptibility tensors, each sequence of lanthanides built into one molecule produces a unique magnetic outcome. Multiplexing of the encoded molecules provides a high number of codes that grows double-exponentially with the number of available paramagnetic ions. The codes are readable by nuclear magnetic resonance in the radiofrequency (RF) spectrum, analogously to the macroscopic technology of RF identification. A prototype molecular system capable of 16-bit (65,535 codes) encoding is presented. Future optimized systems can conceivably provide 64-bit (~10^19 codes) or higher encoding to cover the labelling needs in drug discovery, anti-counterfeiting and other areas.
Collapse
|
8
|
McDevitt JC, Gupta RA, Dickinson SG, Martin PL, Rieuthavorn J, Freund A, Pizzorno MC, Capaldi EA, Rovnyak D. Methodology for Single Bee and Bee Brain 1H-NMR Metabolomics. Metabolites 2021; 11:metabo11120864. [PMID: 34940622 PMCID: PMC8704342 DOI: 10.3390/metabo11120864] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2021] [Revised: 12/07/2021] [Accepted: 12/07/2021] [Indexed: 11/16/2022] Open
Abstract
The feasibility of metabolomic 1H NMR spectroscopy is demonstrated for its potential to help unravel the complex factors that are impacting honeybee health and behavior. Targeted and non-targeted 1H NMR metabolic profiles of liquid and tissue samples of organisms could provide information on the pathology of infections and on environmentally induced stresses. This work reports on establishing extraction methods for NMR metabolic characterization of Apis mellifera, the European honeybee, describes the currently assignable aqueous metabolome, and gives examples of diverse samples (brain, head, body, whole bee) and biologically meaningful metabolic variation (drone, forager, day old, deformed wing virus). Both high-field (600 MHz) and low-field (80 MHz) methods are applicable, and 1H NMR can observe a useful subset of the metabolome of single bees using accessible NMR instrumentation (600 MHz, inverse room temperature probe) in order to avoid pooling several bees. Metabolite levels and changes can be measured by NMR in the bee brain, where dysregulation of metabolic processes has been implicated in colony collapse. For a targeted study, the ability to recover 10-hydroxy-2-decenoic acid in mandibular glands is shown, as well as markers of interest in the bee brain such as GABA (4-aminobutyrate), proline, and arginine. The findings here support the growing use of 1H NMR more broadly in bees, native pollinators, and insects.
Collapse
Affiliation(s)
- Jayne C. McDevitt
- Department of Chemistry, Bucknell University, 1 Dent Drive, Lewisburg, PA 17837, USA; (J.C.M.); (R.A.G.); (S.G.D.); (P.L.M.)
| | - Riju A. Gupta
- Department of Chemistry, Bucknell University, 1 Dent Drive, Lewisburg, PA 17837, USA; (J.C.M.); (R.A.G.); (S.G.D.); (P.L.M.)
| | - Sydney G. Dickinson
- Department of Chemistry, Bucknell University, 1 Dent Drive, Lewisburg, PA 17837, USA; (J.C.M.); (R.A.G.); (S.G.D.); (P.L.M.)
| | - Phillip L. Martin
- Department of Chemistry, Bucknell University, 1 Dent Drive, Lewisburg, PA 17837, USA; (J.C.M.); (R.A.G.); (S.G.D.); (P.L.M.)
| | - Jean Rieuthavorn
- Department of Biology, Bucknell University, 1 Dent Drive, Lewisburg, PA 17837, USA; (J.R.); (M.C.P.); (E.A.C.)
| | - Amy Freund
- Bruker Biospin, 15 Fortune Drive, Billerica, MA 01821, USA;
| | - Marie C. Pizzorno
- Department of Biology, Bucknell University, 1 Dent Drive, Lewisburg, PA 17837, USA; (J.R.); (M.C.P.); (E.A.C.)
| | - Elizabeth A. Capaldi
- Department of Biology, Bucknell University, 1 Dent Drive, Lewisburg, PA 17837, USA; (J.R.); (M.C.P.); (E.A.C.)
- Program in Animal Behavior, Bucknell University, 1 Dent Drive, Lewisburg, PA 17837, USA
| | - David Rovnyak
- Department of Chemistry, Bucknell University, 1 Dent Drive, Lewisburg, PA 17837, USA; (J.C.M.); (R.A.G.); (S.G.D.); (P.L.M.)
- Correspondence:
| |
Collapse
|
9
|
Morris DC, Prescott SW, Harper JB. Rapid relaxation NMR measurements to predict rate coefficients in ionic liquid mixtures. An examination of reaction outcome changes in a homologous series of ionic liquids. Phys Chem Chem Phys 2021; 23:9878-9888. [PMID: 33908419 DOI: 10.1039/d0cp06066f] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A series of ionic liquids based on the 1-alkyl-3-methylimidazolium cations were examined as components of the solvent mixture for a bimolecular substitution process. The effects on both the rate coefficient of the process and the NMR spin-spin relaxation of the solvent components of changing either the alkyl chain length or the amount of ionic liquid in the reaction mixture were determined. At a constant mole fraction, a shorter alkyl chain length resulted in a greater rate coefficient enhancement and a longer relaxation time, with the opposite effects for a longer alkyl chain length. For a given ionic liquid, increasing the proportion of salt in the reaction mixture resulted in a greater rate coefficient and a shorter relaxation time. The microscopic origins of the rate coefficient enhancement were determined and a step change found in the activation parameters on increasing the alkyl chain length from hexyl to octyl, suggesting notable structuring in solution. Across a range of ionic liquids and solvent compositions, the relaxation time from NMR measurements was shown to relate to the reaction rate coefficient. The approach of using fast and simple NMR relaxation measurements to predict reaction outcomes was exemplified using a morpholinium-based ionic liquid.
Collapse
Affiliation(s)
- Daniel C Morris
- School of Chemical Engineering, University of New South Wales, Sydney, NSW 2052, Australia.
| | | | | |
Collapse
|
10
|
Distribution Model of Fluid Components and Quantitative Calculation of Movable Oil in Inter-Salt Shale Using 2D NMR. ENERGIES 2021. [DOI: 10.3390/en14092447] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Some inter-salt shale reservoirs have high oil saturations but the soluble salts in their complex lithology pose considerable challenges to their production. Low-field nuclear magnetic resonance (NMR) has been widely used in evaluating physical properties, fluid characteristics, and fluid saturation of conventional oil and gas reservoirs as well as common shale reservoirs. However, the fluid distribution analysis and fluid saturation calculations in inter-salt shale based on NMR results have not been investigated because of existing technical difficulties. Herein, to explore the fluid distribution patterns and movable oil saturation of the inter-salt shale, a specific experimental scheme was designed which is based on the joint adaptation of multi-state saturation, multi-temperature heating, and NMR measurements. This novel approach was applied to the inter-salt shale core samples from the Qianjiang Sag of the Jianghan Basin in China. The experiments were conducted using two sets of inter-salt shale samples, namely cylindrical and powder samples. Additionally, by comparing the one-dimensional (1D) and two-dimensional (2D) NMR results of these samples in oil-saturated and octamethylcyclotetrasiloxane-saturated states, the distributions of free movable oil and water were obtained. Meanwhile, the distributions of the free residual oil, adsorbed oil, and kerogen in the samples were obtained by comparing the 2D NMR T1-T2 maps of the original samples with the sample heated to five different temperatures of 80, 200, 350, 450, and 600 °C. This research puts forward a 2D NMR identification graph for fluid components in the inter-salt shale reservoirs. Our experimental scheme effectively solves the problems of fluid composition distribution and movable oil saturation calculation in the study area, which is of notable importance for subsequent exploration and production practices.
Collapse
|