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Zinevich L, Prommer M, Laczkó L, Rozhkova D, Sorokin A, Karyakin I, Bagyura J, Cserkész T, Sramkó G. Phylogenomic insights into the polyphyletic nature of Altai falcons within eastern sakers (Falco cherrug) and the origins of gyrfalcons (Falco rusticolus). Sci Rep 2023; 13:17800. [PMID: 37853004 PMCID: PMC10584951 DOI: 10.1038/s41598-023-44534-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Accepted: 10/10/2023] [Indexed: 10/20/2023] Open
Abstract
The Altai falcon from Central Asia always attracted the attention of humans. Long considered a totemic bird in its native area, modern falconers still much appreciated this large-bodied and mighty bird of prey due to its rarity and unique look. The peculiar body characteristics halfway between the saker falcon (Falco cherrug) and the gyrfalcon (F. rusticolus) triggered debates about its contentious taxonomy. The weak phylogenetic signal associated with traditional genetic methods could not resolve this uncertainty. Here, we address the controversial evolutionary origin of Altai falcons by means of a genome-wide approach, Restriction-site Associated DNA sequencing, using sympatric eastern sakers falcons, allopatric western saker falcons and gyrfalcons as outgroup. This approach provided an unprecedented insight into the phylogenetic relationships of the studied populations by delivering 17,095 unlinked SNPs shedding light on the polyphyletic nature of Altai falcons within eastern sakers. Thus we concluded that the former must correspond to a low taxonomic rank, probably an ecotype or form of the latter. Also, we found that eastern sakers are paraphyletic without gyrfalcons, thus, these latter birds are best regarded as the direct sister lineage of the eastern sakers. This evolutionary relationship, corroborated also by re-analyzing the dataset with the inclusion of outgroup samples (F. biarmicus and F. peregrinus), put eastern sakers into a new light as the potential ancestral genetic source of high latitude and altitude adaptation in descendent populations. Finally, conservation genomic values hint at the stable genetic background of the studied saker populations.
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Affiliation(s)
- Liudmila Zinevich
- Koltzov Institute of Developmental Biology Russian Academy of Sciences, Moscow, Russian Federation
- All-Russian Research Institute for Environmental Protection, Moscow, Russian Federation
| | | | - Levente Laczkó
- HUN-REN-UD Conservation Biology Research Group, Egyetem tér 1, Debrecen, 4032, Hungary
- Evolutionary Genomics Research Group, Department of Botany, University of Debrecen, Egyetem tér 1, Debrecen, 4032, Hungary
| | - Daria Rozhkova
- Koltzov Institute of Developmental Biology Russian Academy of Sciences, Moscow, Russian Federation
- All-Russian Research Institute for Environmental Protection, Moscow, Russian Federation
| | - Alexander Sorokin
- All-Russian Research Institute for Environmental Protection, Moscow, Russian Federation
| | | | - János Bagyura
- MME - BirdLife Hungary, Költő utca 21, Budapest, 1121, Hungary
| | - Tamás Cserkész
- Hungarian Natural History Museum, Baross utca 13, Budapest, 1088, Hungary
| | - Gábor Sramkó
- HUN-REN-UD Conservation Biology Research Group, Egyetem tér 1, Debrecen, 4032, Hungary.
- Evolutionary Genomics Research Group, Department of Botany, University of Debrecen, Egyetem tér 1, Debrecen, 4032, Hungary.
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Detection of spatial avoidance between sousliks and moles by combining field observations, remote sensing and deep learning techniques. Sci Rep 2022; 12:8264. [PMID: 35585229 PMCID: PMC9117191 DOI: 10.1038/s41598-022-12405-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2021] [Accepted: 05/10/2022] [Indexed: 11/30/2022] Open
Abstract
Nowadays, remote sensing is being increasingly applied in ecology and conservation, and even underground animals can successfully be studied if they leave clear signs of their presence in the environment. In this work, by combining a field study, analysis of high-resolution aerial images, and machine learning techniques, we investigated the interspecies relationships of two small burrowing mammals: the spotted souslik Spermophilus suslicus and the European mole Talpa europaea. The study was conducted for 3 years (2018–2020) at a 105-ha grass airfield where both species coexist (Poland). Both field studies and the analysis of aerial imagery showed that, in the period of low population numbers, the souslik avoided coexistence with the European mole, and the presence of the mole was found to reduce the area of the habitat suitable for the souslik. The presence of other burrowing species may be an important element in the habitat selectivity of the souslik, but this has not yet been included in the conservation guidelines for this species. We discuss the contribution of our results to the knowledge of the ecology of burrowing mammals and their interspecies relationships. We also assess the possibility of using remote sensing and deep learning methods in ecology and conservation of small burrowing mammals.
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European Ground Squirrels at the Edge: Current Distribution Status and Anticipated Impact of Climate on Europe’s Southernmost Population. LAND 2022. [DOI: 10.3390/land11020301] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
The European ground squirrel (Spermophilus citellus) is an endangered semifossorial small mammal of grassland/agricultural ecosystems. In the last few decades, the species’ population has declined throughout its range in Europe. The Greek populations represent the southernmost limit of the species’ range and are notably small, scattered, and located mainly in human-modified areas. The goal of the present research is to understand the environmental and anthropogenic variables associated with its distribution in the Mediterranean habitats, assess possible drivers of observed local extinctions, and propose conservation and land-use management actions in light of near-future climate change scenarios. We used presence records since 2000 across all known populations (107 colonies) and maximum entropy conditional probability models (MaxEnt) to calculate both the habitat suitability (bioclimatic variables) and habitat availability (anthropogenic/land-use variables) within the European ground squirrel’s historical range in northern Greece. We report a projected 39% to 94.3% decrease in habitat suitability by 2040–2060 due to climate change. Based on our findings, we provide guidance by proposing nascent conservation actions to protect the few existing colonies in Greece via improved land management practices and identify in situ climate refugia that could be prioritized as sites for future reintroductions.
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Post-release settlement and survival of endangered European ground squirrel after conservation reinforcement. J Nat Conserv 2021. [DOI: 10.1016/j.jnc.2021.126048] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Distribution, Population Size, and Habitat Characteristics of the Endangered European Ground Squirrel (Spermophilus citellus, Rodentia, Mammalia) in Its Southernmost Range. SUSTAINABILITY 2021. [DOI: 10.3390/su13158411] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
The European ground squirrel (Spermophilus citellus) is an endangered species, endemic to Central and Southeastern Europe, inhabiting burrow colonies in grassland and agricultural ecosystems. In recent years, agricultural land-use changes and increased urbanization have largely contributed to a severe population decline across its range, particularly in its southernmost edge. Assessing the population and habitat status of this species is essential for prioritizing appropriate conservation actions. The present study aims to track population size changes and identify habitat characteristics of the species in Greece via a literature search, questionnaires, and fieldwork for assessing trends in population size as well as spatial K-means analysis for estimating its relation to specific habitat attributes. We found that both distribution size (grid number) and colony numbers of the species decreased in the last decades (by 62.4% and 74.6%, respectively). The remaining colonies are isolated and characterized by low density (mean = 7.4 ± 8.6 ind/ha) and low number of animals (mean = 13 ± 16 individuals). Most of the colonies are situated in lowlands and did not relate to specific habitat attributes. Habitat aspect and system productivity (NDVI) were the main factors contributing mostly to the clustering of the existing colonies. These results demonstrate that the species is confined to small, isolated anthropogenic habitats. Specific conservation actions such as population reinforcement, habitat improvement, and specific common agricultural policy measures could effectively improve agroecological zones that are suitable for the maintenance and protection of existing and potential habitats for populations of the species.
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Reynolds-Hogland MJ, Ramsey AB, Seward AT, Pilgrim KL, Engkjer C, Ramsey PW. Response of a remnant marmot population to habitat enhancement yields insights into marmot ecology. J Mammal 2020; 101:658-669. [PMID: 32665739 PMCID: PMC7333880 DOI: 10.1093/jmammal/gyaa021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2019] [Accepted: 02/22/2020] [Indexed: 11/14/2022] Open
Abstract
We evaluated the response of a remnant population of yellow-bellied marmots (Marmota flaviventris) to targeted habitat enhancement in an ecological system that had been degraded during ~100 years of intensive livestock management, including marmot eradication. We used capture-recapture data and a novel use of a multistate framework to evaluate geographic expansion of the marmot population pre- and post-habitat enhancement. We also estimated age-structured survival, reproduction, and sex ratios. The marmot population appeared to respond positively to new habitat opportunities created by habitat enhancement: the number of marmots captured increased from three marmots pre-habitat enhancement to 54 (28 adults and yearlings, 26 young) post-habitat enhancement at the end of the study. Marmots expanded geographically by transitioning into habitat-enhanced areas, and adult females occupied and reproduced in all habitat-enhanced areas. The sex ratio of the young population in 2019 was strongly female-biased, which may have been influenced by poor body condition of breeding females owing to unusually prolonged snow cover that year. Adult and yearling survival were within the range of that reported for colonial adults and yearlings in Colorado. Our results suggest that active habitat enhancement can assist in the recovery of marmot populations in systems where marmots historically existed.
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Affiliation(s)
| | | | | | | | - Cory Engkjer
- USDA Rocky Mountain Research Station, Missoula, MT, USA
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