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Yuan S, Peng J, Zhang Y, Zheng DJ, Bagi S, Wang T, Román-Leshkov Y, Shao-Horn Y. Tuning the Catalytic Activity of Fe-Phthalocyanine-Based Catalysts for the Oxygen Reduction Reaction by Ligand Functionalization. ACS Catal 2022. [DOI: 10.1021/acscatal.2c00184] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Shuai Yuan
- Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
- Department of Materials Science and Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
- Research Laboratory of Electronics, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Jiayu Peng
- Department of Materials Science and Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Yirui Zhang
- Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Daniel J. Zheng
- Department of Materials Science and Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Sujay Bagi
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Tao Wang
- Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
- Department of Materials Science and Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
- Research Laboratory of Electronics, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Yuriy Román-Leshkov
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Yang Shao-Horn
- Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
- Department of Materials Science and Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
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Wzgarda-Raj K, Palusiak M, Wojtulewski S, Rybarczyk-Pirek AJ. The role of sulfur interactions in crystal architecture: experimental and quantum theoretical studies on hydrogen, halogen, and chalcogen bonds in trithiocyanuric acid–pyridine N-oxide co-crystals. CrystEngComm 2021. [DOI: 10.1039/d0ce01319f] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
Hydrogen, halogen, chalcogen bonds and π interactions of the trithiocyanuric acid ring are responsible for crystal structure architecture and have been classified according to the QTAIM approach as closed-shell interactions.
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Affiliation(s)
- Kinga Wzgarda-Raj
- Department of Physical Chemistry, Faculty of Chemistry
- University of Łódź
- 90-236 Lodz
- Poland
| | - Marcin Palusiak
- Department of Physical Chemistry, Faculty of Chemistry
- University of Łódź
- 90-236 Lodz
- Poland
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Rudolf B, Kubicka A, Salmain M, Palusiak M, Rybarczyk-Pirek AJ, Wojtulewski S. Synthesis and characterization of new M(II) carbonyl complexes (M = Fe or Ru) including an η1-N-maleimidato ligand. Reactivity studies with biological thiols. J Organomet Chem 2016. [DOI: 10.1016/j.jorganchem.2015.10.027] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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Łukomska M, Rybarczyk-Pirek AJ, Jabłoński M, Palusiak M. The nature of NO-bonding in N-oxide group. Phys Chem Chem Phys 2015; 17:16375-87. [PMID: 26051488 DOI: 10.1039/c5cp02148k] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
The nature of the NO-bond in the N-oxide group was investigated by means of combined theoretical calculations (including QTAIM and NBO approaches) and statistical analyses of the contents of crystal structure databases. The N-O bond in the N-oxide group should be classified as the NO donating bond with an important contribution of ON back-donation (of the π-electron type, when available). The visualization of the Laplacian of electron density in the region of an oxygen valence sphere suggests the presence of two lone pairs for the imine-N-oxide group (characterized by effective ON back-donation). A detailed bonding analysis performed by means of natural resonance theory indicates that the N→O bond is of an order of magnitude clearly greater than 1. In addition, the stability of the N→O bond in various N-oxides was estimated. The analyses of the hydrogen- and halogen-bonded complexes of the N-oxides reveal strong Lewis basicity of the N-oxide group. The formation of H- and X-bonding leads to N→O bond elongation due to its structural, topological and spectroscopic characteristics. Moreover, in pyridine-N-oxide, the electron-withdrawing -NO2 group additionally stabilizes the N→O bond, whereas the opposite effect can be observed for the electron-donating-NH2 substituent. This is due to a substituent effect on the π-type ON back-donation. As a result, the oxygen atom in pyridine-N-oxide may change its availability during intermolecular interaction formation, as revealed in the interaction energy, which changes by about half of the estimated total interaction energy.
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Affiliation(s)
- Marlena Łukomska
- Department of Theoretical and Structural Chemistry, Faculty of Chemistry, University of Łódź, 163/165 Pomorska St., 90-236 Łódź, Poland.
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Domagała M, Palusiak M. The influence of substituent effect on noncovalent interactions in ternary complexes stabilized by hydrogen-bonding and halogen-bonding. COMPUT THEOR CHEM 2014. [DOI: 10.1016/j.comptc.2013.11.007] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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6
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Hernández-Juárez M, Salazar-Pereda V, Padilla-Martínez II, García-Báez EV. Carbonyl-carbonyl and carbonyl-π interactions as directing motifs in the supramolecular structure of carbonyl(3-oxopenta-1,4-diene-1,5-diyl)[tris(3,5-dimethyl-1H-pyrazol-1-yl-κN2)methane]iridium(III) trifluoromethanesulfonate. Acta Crystallogr C 2012; 68:m367-9. [PMID: 23221250 DOI: 10.1107/s010827011204499x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2012] [Accepted: 10/30/2012] [Indexed: 11/11/2022] Open
Abstract
In the title complex salt, [Ir(C(5)H(4)O)(C(16)H(22)N(6))(CO)](CF(3)O(3)S), the Ir(III) centre adopts a distorted octahedral geometry with a facial coordination of the tris(3,5-dimethyl-1H-pyrazol-1-yl)methane ligand. The C-C distances of the iridacycle are in agreement with its iridacyclohexa-2,5-dien-4-one nature, which presents a nonsymmetric boat-like conformation with the C-Ir-C vertex more bent than the C-C(=O)-C vertex. The supramolecular architecture is mainly directed by CO...CO and CO...π and Csp(3)-H...O interactions, the arrangement of which depends on the anion.
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Affiliation(s)
- Martín Hernández-Juárez
- Centro de Investigaciones Químicas, Universidad Autonoma del Estado de Hidalgo, Mineral de la Reforma, CP, Mexico
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Domagała M, Matczak P, Palusiak M. Halogen bond, hydrogen bond and N⋯C interaction – On interrelation among these three noncovalent interactions. COMPUT THEOR CHEM 2012. [DOI: 10.1016/j.comptc.2012.05.012] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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9
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Interplay of carbonyl–carbonyl, CH⋯O and CH⋯π interactions in hierarchical supramolecular assembly of tartaric anhydrides – Tartaric acid and its O-acyl derivatives: Part 11. J Mol Struct 2012. [DOI: 10.1016/j.molstruc.2012.02.053] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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10
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Karthikeyan S, Velavan K, Sathishkumar R, Varghese B, Manimaran B. Self-Assembly of Manganese(I)-Based Molecular Squares: Synthesis and Spectroscopic and Structural Characterization. Organometallics 2012. [DOI: 10.1021/om201244a] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- S. Karthikeyan
- Department of Chemistry, Pondicherry University, Puducherry, 605014, India
| | - K. Velavan
- Department of Chemistry, Pondicherry University, Puducherry, 605014, India
| | - Ranganathan Sathishkumar
- Solid State and Structural Chemistry
Unit, Indian Institute of Science, Bangalore,
560012, India
| | - Babu Varghese
- Sophisticated
Analytical Instruments
Facility, Indian Institute of Technology-Madras, Chennai, 600036, India
| | - Bala. Manimaran
- Department of Chemistry, Pondicherry University, Puducherry, 605014, India
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Bankiewicz B, Matczak P, Palusiak M. Electron Density Characteristics in Bond Critical Point (QTAIM) versus Interaction Energy Components (SAPT): The Case of Charge-Assisted Hydrogen Bonding. J Phys Chem A 2011; 116:452-9. [DOI: 10.1021/jp210940b] [Citation(s) in RCA: 86] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Barbara Bankiewicz
- Department of Theoretical Chemistry, University of Białystok, Hurtowa 1, 15-399, Białystok, Poland
| | - Piotr Matczak
- Department of Theoretical and Structural Chemistry, University of Łódź, Tamka 12, 91-403 Łódź, Poland
| | - Marcin Palusiak
- Department of Theoretical and Structural Chemistry, University of Łódź, Tamka 12, 91-403 Łódź, Poland
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Bankiewicz B, Palusiak M. Does electron density in bond critical point reflect the formal charge distribution in H-bridges? The case of charge-assisted hydrogen bonds (CAHBs). COMPUT THEOR CHEM 2011. [DOI: 10.1016/j.comptc.2011.02.021] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Diels-Alder reaction with cyclopentadiene and electronic structures of (η5-cyclopentadienyl)M(CO)x(η1-N-maleimidato) (M=Fe, Mo, W, x=2 or 3). J Organomet Chem 2009. [DOI: 10.1016/j.jorganchem.2008.12.031] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Gkionis K, Platts JA, Hill JG. Insights into DNA Binding of Ruthenium Arene Complexes: Role of Hydrogen Bonding and π Stacking. Inorg Chem 2008; 47:3893-902. [DOI: 10.1021/ic702459h] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | - James A. Platts
- School of Chemistry, Cardiff University, Park Place, Cardiff CF10 3AT, U.K
| | - J. Grant Hill
- School of Chemistry, Cardiff University, Park Place, Cardiff CF10 3AT, U.K
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