Picosecond time-resolved fluorescent spectroscopy of 1-anilino-8-naphthalene sulfonate binding with staphylococcal nuclease in the native and molten globule states

ANS Interacts with the Ca2+-ATPase Nucleotide Binding Site

The binding of 8-anilino-1-naphthalene sulfonate (ANS) to the nucleotide binding domain (N-domain) of the sarcoplasmic reticulum Ca²⁺-ATPase (SERCA) was studied. Molecular docking predicted two ANS binding modes (BMI and BMII) in the nucleotide binding site. The molecular interaction was confirmed as the fluorescence intensity of ANS was dramatically increased when in the presence of an engineered recombinant N-domain. Molecular dynamics simulation showed BMI (which occupies the ATP binding site) as the mode that is stable in solution. The above was confirmed by the absence of ANS fluorescence in the presence of a fluorescein isothiocyanate (FITC)-labeled N-domain. Further, the labeling of the N-domain with FITC was hindered by the presence of ANS, i.e., ANS was bound to the ATP binding site. Importantly, ANS displayed a higher affinity than ATP. In addition, ANS binding led to quenching the N-domain intrinsic fluorescence displaying a FRET pattern, which suggested the existence of a Trp-ANS FRET couple. Nonetheless, the chemical modification of the sole Trp residue with N-bromosuccinimide (NBS) discarded the existence of FRET and instead indicated structural rearrangements in the nucleotide binding site during ANS binding. Finally, Ca²⁺-ATPase kinetics in the presence of ANS showed a partial mixed-type inhibition. The Dixon plot showed the ANS-Ca²⁺-ATPase complex as catalytically active, hence supporting the existence of a functional dimeric Ca²⁺-ATPase in sarcoplasmic reticulum vesicles. ANS may be used as a molecular platform for the development of more effective inhibitors of Ca²⁺-ATPase and appears to be a new fluorescent probe for the nucleotide binding site. Graphical Abstract Molecular docking of ANS to the nucleotide binding site of Ca²⁺-ATPase. ANS fluorescence increase reveals molecular interaction.

Interactions between tetracycline and extracellular polymeric substances in anammox granular sludge

The effects of antibiotics on extracellular polymeric substances (EPS) using tetracycline as the model chemical were analyzed in terms of molecular property and structure. Results showed that three components, tryptophan, tryptophan type-proteins and polysaccharides in EPS of granular sludge from anaerobic ammonium oxidation (anammox) reactor can interacted with tetracycline, detected by the static quenching via the endogenous fluorescence quenching and transient fluorescence spectroscopy. Thermodynamic experiment confirmed that their interaction was dominated by the hydrophobic force. Combined with the synchronous fluorescence spectroscopy, it was found that tetracycline facilitated the extension degree of peptide chains in tryptophan type-proteins, leading to the enhancement of hydrodynamic diameter of the macromolecules in EPS when binding with tetracycline. EPS in AnGS demonstrated the resistance ability to tetracycline by converting from gel to sol state in rheological term. With the increase of tetracycline concentration, the stability of elastic structures in EPS declined, influencing the AnGS stability.