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Sevinç G, Doğan E, Mansuroğlu S, Gurbanov R. Synthesis and Photophysical Characterizations of Benzimidazole Functionalized BODIPY Dyes. J Fluoresc 2024:10.1007/s10895-024-03688-8. [PMID: 38587711 DOI: 10.1007/s10895-024-03688-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2024] [Accepted: 03/22/2024] [Indexed: 04/09/2024]
Abstract
Herein, a series of new BODIPY dyes substituted by 2-phenyl benzimidazole units at the meso (C8) position including methyl/ethyl, phenyl, or p-methoxyphenyl moieties at the distal and proximal positions of the BODIPY core have been successfully synthesized and their photophysical characteristics were analyzed. Experimentally investigating absorption and fluorescence profiles in the THF media was followed by density functional theory (DFT) calculations to clarify photophysical features. Theoretical analyses have revealed that upon excitation, both electrons and holes are confined solely within the BODIPY core. The energy levels of the frontier molecular orbitals converge depending on the presence of the phenyl and p-methoxyphenyl substituents. The orbital distributions of both electron and hole were in the -3 and -5 positions, which demonstrates a continuous conjugation with the BODIPY core at these sites. However, the electron density present on the phenyl rings located at the -1, -7, and -8 (meso) positions was found to be negligible. The benzimidazole-BODIPYs exhibited photodynamic activity (Φ∆) ranging from ~ 7% to ~ 11%, determined by a comparative method. Moreover, the compounds have shown to maintain their stability thermally in a non-reactive/inert environment up to temperatures surpassing 300 °C, exhibiting primarily a two-phase decomposition process. These compounds have the potential to function as antibacterial and anti-biofilm agents when used in concentrations ranging from 0.5 to 2.0 mg/mL. The results provide a basis for evaluating heterocyclic benzimidazole units on photophysical processes containing BODIPY chromophores.
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Affiliation(s)
- Gökhan Sevinç
- Faculty of Science, Department of Chemistry, Bilecik Seyh Edebali University, TR, 11100, Bilecik, Turkey.
| | - Emine Doğan
- Faculty of Science, Department of Chemistry, Bilecik Seyh Edebali University, TR, 11100, Bilecik, Turkey
| | - Sina Mansuroğlu
- Department of Bioengineering, Bilecik Seyh Edebali University, Engineering Faculty, TR, 11100, Bilecik, Turkey
| | - Rafig Gurbanov
- Department of Bioengineering, Bilecik Seyh Edebali University, Engineering Faculty, TR, 11100, Bilecik, Turkey.
- Central Research Laboratory (BARUM), Bilecik Seyh Edebali University, 11100, Bilecik, Turkey.
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Dutta D, Nair RR, Neog K, Nair SA, Gogoi P. Mitochondria-targeted biotin-conjugated BODIPYs for cancer imaging and therapy. RSC Med Chem 2023; 14:2358-2364. [PMID: 37974957 PMCID: PMC10650437 DOI: 10.1039/d3md00347g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Accepted: 09/21/2023] [Indexed: 11/19/2023] Open
Abstract
Two BODIPY-biotin conjugates KDP1 and KDP2 are designed and synthesized for targeted PDT applications. Both have good absorption with a high molar absorption coefficient and decent singlet oxygen generation quantum yields. The photosensitizers KDP1 and KDP2 were found to be localized in the mitochondria with excellent photocytotoxicity of up to 18.7 nM in MDA-MB-231 breast cancer cells. The cell death predominantly proceeded through the apoptosis pathway via ROS production.
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Affiliation(s)
- Dhiraj Dutta
- Applied Organic Chemistry Group, Chemical Science and Technology Division, CSIR-North East Institute of Science and Technology (CSIR-NEIST) Assam Jorhat-785006 India
- Academy of Scientific and Innovative Research (AcSIR) Ghaziabad-201002 India
| | - Rajshree R Nair
- Cancer Research Program, Rajiv Gandhi Centre for Biotechnology Trivandrum-695014 Kerala India
- Manipal Academy of Higher Education Manipal-576104 Karnataka India
| | - Kashmiri Neog
- Applied Organic Chemistry Group, Chemical Science and Technology Division, CSIR-North East Institute of Science and Technology (CSIR-NEIST) Assam Jorhat-785006 India
| | - S Asha Nair
- Cancer Research Program, Rajiv Gandhi Centre for Biotechnology Trivandrum-695014 Kerala India
| | - Pranjal Gogoi
- Applied Organic Chemistry Group, Chemical Science and Technology Division, CSIR-North East Institute of Science and Technology (CSIR-NEIST) Assam Jorhat-785006 India
- Academy of Scientific and Innovative Research (AcSIR) Ghaziabad-201002 India
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Matveeva MD, Zheleznova TY, Kostyuchenko AS, Miftyakhova AR, Zhilyaev DI, Voskressensky LG, Talarico G, Efimov IV. 1,7‐isoxazolyl Substituted BODIPY Dyes – Synthesis and Photophysical Properties. ChemistrySelect 2023. [DOI: 10.1002/slct.202204465] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Affiliation(s)
- Maria D. Matveeva
- A.V. Topchiev Institute of Petrochemical Synthesis, Russian Academy of Sciences 119991 Moscow Russia
| | - Tatyana Yu. Zheleznova
- Laboratory of New Organic Materials Omsk State Technical University 644050 Omsk, Mira Ave. 11 Russia
| | - Anastasia S. Kostyuchenko
- Laboratory of New Organic Materials Omsk State Technical University 644050 Omsk, Mira Ave. 11 Russia
| | - Almira R. Miftyakhova
- Research Center: Molecular Design and Synthesis of Innovative Compounds for Medicine Peoples' Friendship University of Russia (RUDN University) 117198, Russia Moscow, Miklukho-Maklaya st, 6 Russia
| | - Dmitry I. Zhilyaev
- Research Center: Molecular Design and Synthesis of Innovative Compounds for Medicine Peoples' Friendship University of Russia (RUDN University) 117198, Russia Moscow, Miklukho-Maklaya st, 6 Russia
| | - Leonid G. Voskressensky
- Research Center: Molecular Design and Synthesis of Innovative Compounds for Medicine Peoples' Friendship University of Russia (RUDN University) 117198, Russia Moscow, Miklukho-Maklaya st, 6 Russia
| | - Giovanni Talarico
- Dipartimento di Scienze Chimiche Università di Napoli Federico II, Via Cintia 80124 Napoli Italy
| | - Ilya V. Efimov
- Research Center: Molecular Design and Synthesis of Innovative Compounds for Medicine Peoples' Friendship University of Russia (RUDN University) 117198, Russia Moscow, Miklukho-Maklaya st, 6 Russia
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Alkhatib Q, Helal W, Marashdeh A. Accurate predictions of the electronic excited states of BODIPY based dye sensitizers using spin-component-scaled double-hybrid functionals: a TD-DFT benchmark study. RSC Adv 2022; 12:1704-1717. [PMID: 35425182 PMCID: PMC8978916 DOI: 10.1039/d1ra08795a] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2021] [Accepted: 01/01/2022] [Indexed: 12/31/2022] Open
Abstract
The vertical excitation energies of 13 BODIPY based dye sensitizers are benchmarked by means of TD-DFT, using 36 functionals from different DFT rungs. Most TD-DFT results were found to overestimate the excitation energies, and show mean absolute error (MAE) values in the range 0.2–0.5 eV. The dispersion-corrected, spin-component-scaled, double-hybrid (DSD) functionals DSD-BLYP and DSD-PBEP86 were found to have the smallest MAE values of 0.083 eV and 0.106 eV, respectively, which is close to the range of average errors found in the more expensive coupled-cluster methods. Moreover, DSD-BLYP and DSD-PBEP86 functionals show excellent consistency and quality of results (standard deviation = 0.048 eV and 0.069 eV respectively). However, the range separated hybrid (RSH) and the range separated double hybrid (RSDH) functionals were found to provide the best predictability (linear determination coefficient R2 > 0.97 eV). The excitation energies of 13 BODIPY dye sensitizers are benchmarked by means of TD-DFT, using 36 functionals. Spin-component-scaled double-hybrid (DSD) functionals are found to show the best performance.![]()
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Affiliation(s)
- Qabas Alkhatib
- Department of Chemistry, The University of Jordan Amman 11 942 Jordan
| | - Wissam Helal
- Department of Chemistry, The University of Jordan Amman 11 942 Jordan
| | - Ali Marashdeh
- Department of Chemistry, Al-Balqa Applied University 19 117 Al-Salt Jordan.,Leiden Institute of Chemistry, Gorlaeus Laboratories, Leiden University P. O. Box 9502 2300 RA Leiden The Netherlands
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Matveeva MD, Zhilyaev DI, Miftyakhova AR, Chulkin P, Janasik P, Voskressensky LG, Talarico G, Efimov IV. Synthesis and photophysical properties of novel oxadiazole substituted BODIPY fluorophores. NEW J CHEM 2022. [DOI: 10.1039/d1nj05317e] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Using 3-phenyl-5-(5-phenyl-1H-pyrrol-3-yl)-1,2,4-oxadiazole, BODIPYs with the oxadiazole groups at the 1,7-positions were prepared and their photophysical properties were characterized.
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Affiliation(s)
- Maria D. Matveeva
- A. V. Topchiev Institute of Petrochemical Synthesis, Russian Academy of Sciences, Leninsky pr. 29, Moscow, 119991, Russian Federation
| | - Dmitry I. Zhilyaev
- Research Center, Molecular Design and Synthesis of Innovative Compounds for Medicine, RUDN University, Miklukho-Maklaya st, 6, Moscow, 117198, Russia
| | - Almira R. Miftyakhova
- Research Center, Molecular Design and Synthesis of Innovative Compounds for Medicine, RUDN University, Miklukho-Maklaya st, 6, Moscow, 117198, Russia
| | - Pavel Chulkin
- Department of Physical Chemistry and Technology of Polymers, Faculty of Chemistry, Silesian University of Technology, Strzody 9, Gliwice 44-100, Poland
| | - Patryk Janasik
- Department of Physical Chemistry and Technology of Polymers, Faculty of Chemistry, Silesian University of Technology, Strzody 9, Gliwice 44-100, Poland
| | - Leonid G. Voskressensky
- Research Center, Molecular Design and Synthesis of Innovative Compounds for Medicine, RUDN University, Miklukho-Maklaya st, 6, Moscow, 117198, Russia
| | - Giovanni Talarico
- Dipartimento di Scienze Chimiche, Università di Napoli Federico II, Via Cintia, Napoli, 80124, Italy
| | - Ilya V. Efimov
- Research Center, Molecular Design and Synthesis of Innovative Compounds for Medicine, RUDN University, Miklukho-Maklaya st, 6, Moscow, 117198, Russia
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Helal W, Alkhatib Q, Gharaibeh M. Can time-dependent double hybrid density functionals accurately predict electronic excitation energies of BODIPY compounds? COMPUT THEOR CHEM 2022. [DOI: 10.1016/j.comptc.2021.113531] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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Kursunlu AN, Yilmaz AK, Yemisci E, Guler E. Photophysical challenges and antenna effect between click reaction-based Bodipy derivatives manufactured from Knorr pyrrole. RESULTS IN CHEMISTRY 2022. [DOI: 10.1016/j.rechem.2022.100460] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
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A Novel Fluorescent Chemosensor for cu (II) Ion: Click Synthesis of Dual-Bodipy Including the Triazole Groups and Bioimaging of Yeast Cells. J Fluoresc 2019; 29:1321-1329. [DOI: 10.1007/s10895-019-02456-3] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2019] [Accepted: 10/31/2019] [Indexed: 01/20/2023]
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