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Stanková J, Jurášek M, Hajdúch M, Džubák P. Terpenes and Terpenoids Conjugated with BODIPYs: An Overview of Biological and Chemical Properties. JOURNAL OF NATURAL PRODUCTS 2024; 87:1306-1319. [PMID: 38482846 PMCID: PMC11061839 DOI: 10.1021/acs.jnatprod.3c00961] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Revised: 02/28/2024] [Accepted: 03/04/2024] [Indexed: 05/03/2024]
Abstract
Advancements in small-molecule research have created the need for sensitive techniques to accurately study biological processes in living systems. Fluorescent-labeled probes have become indispensable tools, particularly those that use boron-dipyrromethene (BODIPY) dyes. Terpenes and terpenoids are organic compounds found in nature that offer diverse biological activities, and BODIPY-based probes play a crucial role in studying these compounds. Monoterpene-BODIPY conjugates have exhibited potential for staining bacterial and fungal cells. Sesquiterpene-BODIPY derivatives have been used to study sarcoplasmic/endoplasmic reticulum calcium ATPase (SERCA), indicating their potential for drug development. Owing to their unique properties, diterpenes have been investigated using BODIPY conjugates to evaluate their mechanisms of action. Triterpene-BODIPY conjugates have been synthesized for biological studies, with different spacers affecting their cytotoxicity. Fluorescent probes, inspired by terpenoid-containing vitamins, have also been developed. Derivatives of tocopherol, coenzyme Q10, and vitamin K1 can provide insights into their oxidation-reduction abilities. All these probes have diverse applications, including the study of cell membranes to investigate immune responses and antioxidant properties. Further research in this field can help better understand and use terpenes and terpenoids in various biological contexts.
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Affiliation(s)
- Jarmila Stanková
- Institute
of Molecular and Translational Medicine, Faculty of Medicine and Dentistry, Palacký University, 77900 Olomouc, Czech Republic
| | - Michal Jurášek
- Department
of Chemistry of Natural Compounds, University
of Chemistry and Technology Prague, 16628 Prague, Czech Republic
| | - Marián Hajdúch
- Institute
of Molecular and Translational Medicine, Faculty of Medicine and Dentistry, Palacký University, 77900 Olomouc, Czech Republic
- Laboratory
of Experimental Medicine, Institute of Molecular and Translational
Medicine, University Hospital Olomouc, 77900 Olomouc, Czech Republic
| | - Petr Džubák
- Institute
of Molecular and Translational Medicine, Faculty of Medicine and Dentistry, Palacký University, 77900 Olomouc, Czech Republic
- Laboratory
of Experimental Medicine, Institute of Molecular and Translational
Medicine, University Hospital Olomouc, 77900 Olomouc, Czech Republic
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The influence of structural effects and the solvent properties on spectral, generation characteristics, photostability and lipophilicity of 1,3,5,7-tetramethyl-BODIPY and its alkylated and iodinated derivatives. J Photochem Photobiol A Chem 2023. [DOI: 10.1016/j.jphotochem.2023.114611] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/10/2023]
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Effect of meso-substituent and solvent nature on spectral properties, pH-stability and affinity to blood transport proteins of BODIPY dyes. J Mol Liq 2023. [DOI: 10.1016/j.molliq.2022.121078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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Remodeling of the Enterococcal Cell Envelope during Surface Penetration Promotes Intrinsic Resistance to Stress. mBio 2022; 13:e0229422. [PMID: 36354750 PMCID: PMC9765498 DOI: 10.1128/mbio.02294-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Enterococcus faecalis is a normal commensal of the human gastrointestinal tract (GIT). However, upon disruption of gut homeostasis, this nonmotile bacterium can egress from its natural niche and spread to distal organs. While this translocation process can lead to life-threatening systemic infections, the underlying mechanisms remain largely unexplored. Our prior work showed that E. faecalis migration across diverse surfaces requires the formation of matrix-covered multicellular aggregates and the synthesis of exopolysaccharides, but how enterococcal cells are reprogrammed during this process is unknown. Whether surface penetration endows E. faecalis with adaptive advantages is also uncertain. Here, we report that surface penetration promotes the generation of a metabolically and phenotypically distinct E. faecalis population with an enhanced capacity to endure various forms of extracellular stress. Surface-invading enterococci demonstrated major ultrastructural alterations in their cell envelope characterized by increased membrane glycolipid content. These changes were accompanied by marked induction of specific transcriptional programs enhancing cell envelope biogenesis and glycolipid metabolism. Notably, the surface-invading population demonstrated superior tolerance to membrane-damaging antimicrobials, including daptomycin and β-defensins produced by epithelial cells. Genetic mutations impairing glycolipid biosynthesis sensitized E. faecalis to envelope stressors and reduced the ability of this bacterium to penetrate semisolid surfaces and translocate through human intestinal epithelial cell monolayers. Our study reveals that surface penetration induces distinct transcriptional, metabolic, and ultrastructural changes that equip E. faecalis with enhanced capacity to resist external stressors and thrive in its surrounding environment. IMPORTANCE Enterococcus faecalis inhabits the GIT of multiple organisms, where its establishment could be mediated by the formation of biofilm-like aggregates. In susceptible individuals, this bacterium can overgrow and breach intestinal barriers, a process that may lead to lethal systemic infections. While the formation of multicellular aggregates promotes E. faecalis migration across surfaces, little is known about the metabolic and physiological states of the enterococci encased in these surface-penetrating structures. The present study reveals that E. faecalis cells capable of migrating through semisolid surfaces genetically reprogram their metabolism toward increased cell envelope and glycolipid biogenesis, which confers superior tolerance to membrane-damaging agents. E. faecalis's success as a pathobiont depends on its antimicrobial resistance, as well as on its rapid adaptability to overcome multiple environmental challenges. Thus, targeting adaptive genetic and/or metabolic pathways induced during E. faecalis surface penetration may be useful to better confront infections by this bacterium in the clinic.
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Frantsuzova LV, Gerasimova DP, Lodochnikova OA. STEREOCHEMICAL FEATURES OF REPRODUCING A STABLE DIMERIC MOTIF IN THE CRYSTALS OF BODIPY DERIVATIVES IN TRANSITIONING FROM AN ACHIRAL TO A CHIRAL SUBSTITUTE IN MESO-POSITION. J STRUCT CHEM+ 2022. [DOI: 10.1134/s0022476622120010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
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Guseva GB, Antina EV, Berezin MB, Smirnova AS, Pavelyev RS, Gilfanov IR, Shevchenko OG, Pestova SV, Izmest’ev ES, Rubtsova SA, Ostolopovskaya OV, Efimov SV, Klochkov VV, Rakhmatullin IZ, Timerova AF, Khodov IA, Lodochnikova OA, Islamov DR, Dorovatovskii PV, Nikitina LE, Boichuk SV. Design, Spectral Characteristics, Photostability, and Possibilities for Practical Application of BODIPY FL-Labeled Thioterpenoid. Bioengineering (Basel) 2022; 9:bioengineering9050210. [PMID: 35621488 PMCID: PMC9138141 DOI: 10.3390/bioengineering9050210] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2022] [Revised: 05/03/2022] [Accepted: 05/05/2022] [Indexed: 11/16/2022] Open
Abstract
This paper presents the design and a comparative analysis of the structural and solvation factors on the spectral and biological properties of the BODIPY biomarker with a thioterpene fragment. Covalent binding of the thioterpene moiety to the butanoic acid residue of meso-substituted BODIPY was carried out to find out the membranotropic effect of conjugate to erythrocytes, and to assess the possibilities of its practical application in bioimaging. The molecular structure of the conjugate was confirmed via X-ray, UV/vis-, NMR-, and MS-spectra. It was found that dye demonstrates high photostability and high fluorescence quantum yield (to ~100%) at 514–519 nm. In addition, the marker was shown to effectively penetrate the erythrocytes membrane in the absence of erythrotoxicity. The conjugation of BODIPY with thioterpenoid is an excellent way to increase affinity dyes to biostructures, including blood components.
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Affiliation(s)
- Galina B. Guseva
- G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, 1 Akademicheskaya Street, 153045 Ivanovo, Russia; (G.B.G.); (E.V.A.); (M.B.B.); (A.S.S.); (I.A.K.)
| | - Elena V. Antina
- G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, 1 Akademicheskaya Street, 153045 Ivanovo, Russia; (G.B.G.); (E.V.A.); (M.B.B.); (A.S.S.); (I.A.K.)
| | - Mikhail B. Berezin
- G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, 1 Akademicheskaya Street, 153045 Ivanovo, Russia; (G.B.G.); (E.V.A.); (M.B.B.); (A.S.S.); (I.A.K.)
| | - Anastassia S. Smirnova
- G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, 1 Akademicheskaya Street, 153045 Ivanovo, Russia; (G.B.G.); (E.V.A.); (M.B.B.); (A.S.S.); (I.A.K.)
- Faculty of Fundamental and Applied Chemistry, Ivanovo State University of Chemistry and Technology, 7, Sheremetevskiy Avenue, 153000 Ivanovo, Russia
| | - Roman S. Pavelyev
- Biologically Active Terpenoids Laboratory, Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russia; (R.S.P.); (I.R.G.); (O.V.O.); (S.V.E.); (V.V.K.); (I.Z.R.); (A.F.T.); (L.E.N.)
| | - Ilmir R. Gilfanov
- Biologically Active Terpenoids Laboratory, Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russia; (R.S.P.); (I.R.G.); (O.V.O.); (S.V.E.); (V.V.K.); (I.Z.R.); (A.F.T.); (L.E.N.)
- Varnishes and Paints Department, Kazan National Research Technological University, 68 K. Marksa Street, 420015 Kazan, Russia
| | - Oksana G. Shevchenko
- Center of Collective Usage Molecular Biology, Institute of Biology, Komi Science Centre, Ural Branch of Russian Academy of Sciences, 28 Kommunisticheskaya Street, 167982 Syktyvkar, Russia;
| | - Svetlana V. Pestova
- Medical Chemistry Laboratory, Institute of Chemistry, Komi Scientific Centre, Ural Branch of Russian Academy of Sciences, 48 Pervomaiskaya Street, 167000 Syktyvkar, Russia; (S.V.P.); (E.S.I.); (S.A.R.)
| | - Evgeny S. Izmest’ev
- Medical Chemistry Laboratory, Institute of Chemistry, Komi Scientific Centre, Ural Branch of Russian Academy of Sciences, 48 Pervomaiskaya Street, 167000 Syktyvkar, Russia; (S.V.P.); (E.S.I.); (S.A.R.)
| | - Svetlana A. Rubtsova
- Medical Chemistry Laboratory, Institute of Chemistry, Komi Scientific Centre, Ural Branch of Russian Academy of Sciences, 48 Pervomaiskaya Street, 167000 Syktyvkar, Russia; (S.V.P.); (E.S.I.); (S.A.R.)
| | - Olga V. Ostolopovskaya
- Biologically Active Terpenoids Laboratory, Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russia; (R.S.P.); (I.R.G.); (O.V.O.); (S.V.E.); (V.V.K.); (I.Z.R.); (A.F.T.); (L.E.N.)
- General and Organic Chemistry Department, Kazan State Medical University, 49 Butlerova Street, 420012 Kazan, Russia
| | - Sergey V. Efimov
- Biologically Active Terpenoids Laboratory, Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russia; (R.S.P.); (I.R.G.); (O.V.O.); (S.V.E.); (V.V.K.); (I.Z.R.); (A.F.T.); (L.E.N.)
| | - Vladimir V. Klochkov
- Biologically Active Terpenoids Laboratory, Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russia; (R.S.P.); (I.R.G.); (O.V.O.); (S.V.E.); (V.V.K.); (I.Z.R.); (A.F.T.); (L.E.N.)
| | - Ilfat Z. Rakhmatullin
- Biologically Active Terpenoids Laboratory, Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russia; (R.S.P.); (I.R.G.); (O.V.O.); (S.V.E.); (V.V.K.); (I.Z.R.); (A.F.T.); (L.E.N.)
| | - Ayzira F. Timerova
- Biologically Active Terpenoids Laboratory, Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russia; (R.S.P.); (I.R.G.); (O.V.O.); (S.V.E.); (V.V.K.); (I.Z.R.); (A.F.T.); (L.E.N.)
| | - Ilya A. Khodov
- G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, 1 Akademicheskaya Street, 153045 Ivanovo, Russia; (G.B.G.); (E.V.A.); (M.B.B.); (A.S.S.); (I.A.K.)
| | - Olga A. Lodochnikova
- Arbuzov Institute of Organic and Physical Chemistry, FRC Kazan Scientific Center, Russian Academy of Sciences, 8 Arbuzova Street, 420029 Kazan, Russia;
| | - Daut R. Islamov
- Laboratory for Structural Analysis of Biomacromolecules, Kazan Scientific Center, Russian Academy of Sciences, 18 Kremlevskaya Street, 420008 Kazan, Russia;
| | - Pavel V. Dorovatovskii
- National Research Centre “Kurchatov Institute”, 1 Academician Kurchatov Street, 123098 Moscow, Russia;
| | - Liliya E. Nikitina
- Biologically Active Terpenoids Laboratory, Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russia; (R.S.P.); (I.R.G.); (O.V.O.); (S.V.E.); (V.V.K.); (I.Z.R.); (A.F.T.); (L.E.N.)
- General and Organic Chemistry Department, Kazan State Medical University, 49 Butlerova Street, 420012 Kazan, Russia
| | - Sergei V. Boichuk
- Biologically Active Terpenoids Laboratory, Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russia; (R.S.P.); (I.R.G.); (O.V.O.); (S.V.E.); (V.V.K.); (I.Z.R.); (A.F.T.); (L.E.N.)
- General and Organic Chemistry Department, Kazan State Medical University, 49 Butlerova Street, 420012 Kazan, Russia
- Correspondence:
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Si Y, Grazon C, Clavier G, Audibert JF, Sclavi B, Méallet-Renault R. FRET-mediated quenching of BODIPY fluorescent nanoparticles by methylene blue and its application to bacterial imaging. Photochem Photobiol Sci 2022; 21:1249-1255. [PMID: 35428949 DOI: 10.1007/s43630-022-00215-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2021] [Accepted: 03/21/2022] [Indexed: 11/28/2022]
Abstract
High resolution and a good signal to noise ratio are a requirement in cell imaging. However, after labelling with fluorescent entities, and after several washing steps, there is often an unwanted fluorescent background that reduces the images resolution. For this purpose, we developed an approach to remove the signal from extra-cellular fluorescent nanoparticles (FNPs) during bacteria imaging, without the need for any washing steps. Our idea is to use methylene blue to quench > 90% of the emission of BODIPY-based fluorescent polymer nanoparticle by a FRET process. This "Hide-and-Seek Game" approach offers a novel strategy to apply fluorescence quenching in bioimaging to improve image accuracy.
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Affiliation(s)
- Yang Si
- PPSM, Université Paris-Saclay, ENS Paris-Saclay, CNRS, 91190, Gif-sur-Yvette, France.,LBPA, Université Paris-Saclay, ENS Paris-Saclay, CNRS, 91190, Gif-sur-Yvette, France.,Epigenetic Chemical Biology, CNRS UMR3523, Institut Pasteur, 28 Rue du Dr Roux, 75015, Paris, France
| | - Chloé Grazon
- PPSM, Université Paris-Saclay, ENS Paris-Saclay, CNRS, 91190, Gif-sur-Yvette, France.,University of Bordeaux, CNRS, Bordeaux INP, ISM, UMR 5255, 33400, Talence, France
| | - Gilles Clavier
- PPSM, Université Paris-Saclay, ENS Paris-Saclay, CNRS, 91190, Gif-sur-Yvette, France
| | | | - Bianca Sclavi
- LBPA, Université Paris-Saclay, ENS Paris-Saclay, CNRS, 91190, Gif-sur-Yvette, France. .,LCQB, CNRS UMR 7238, Sorbonne Université, 4 Place Jussieu, 75005, Paris, France.
| | - Rachel Méallet-Renault
- PPSM, Université Paris-Saclay, ENS Paris-Saclay, CNRS, 91190, Gif-sur-Yvette, France. .,ISMO, Université Paris-Saclay, CNRS, 91405, Orsay, France.
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9
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Guseva GB, Antina EV, Berezin MB, Ksenofontov AA, Bocharov PS, Smirnova AS, Pavelyev RS, Gilfanov IR, Pestova SV, Izmest'ev ES, Rubtsova SA, Kayumov AR, Kiselev SV, Azizova ZR, Ostolopovskaya OV, Efimov SV, Klochkov VV, Khodov IA, Nikitina LE. Conjugate of meso-carboxysubstituted-BODIPY with thioterpenoid as an effective fluorescent probe: Synthesis, structure, spectral characteristics, and molecular docking. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2022; 268:120638. [PMID: 34840052 DOI: 10.1016/j.saa.2021.120638] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2021] [Revised: 10/20/2021] [Accepted: 11/12/2021] [Indexed: 06/13/2023]
Abstract
This paper is devoted to the design of a fluorescent probe based on meso-carboxysubstituted-BODIPY with a thioterpene fragment. The functional replacement of the methoxy group in the BODIPY molecule on a thioterpene fragment was carried out in order to find out the antiplatelet and anticoagulant action mechanisms of thioterpenoids and to assess the membrane and receptor factors contributions. The molecular structure of the conjugate was confirmed via UV/vis-, NMR- and MS-spectra. It is found that the probe is a high fluorescence quantum yield (to ∼ 100%) in the blue-green region at 509-516 nm. Molecular docking of all studied molecules showed that the BODIPY with terpenoid conjugation is an excellent way to increase their affinity to platelet receptor P2Y12.
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Affiliation(s)
- Galina B Guseva
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, 1 Akademicheskaya st., 153045 Ivanovo, Russia.
| | - Elena V Antina
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, 1 Akademicheskaya st., 153045 Ivanovo, Russia
| | - Mikhail B Berezin
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, 1 Akademicheskaya st., 153045 Ivanovo, Russia
| | - Alexander A Ksenofontov
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, 1 Akademicheskaya st., 153045 Ivanovo, Russia
| | - Pavel S Bocharov
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, 1 Akademicheskaya st., 153045 Ivanovo, Russia; Ivanovo State University of Chemistry and Technology, 7, Sheremetevskiy Avenue, 153000 Ivanovo, Russia
| | - Anastassia S Smirnova
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, 1 Akademicheskaya st., 153045 Ivanovo, Russia; Ivanovo State University of Chemistry and Technology, 7, Sheremetevskiy Avenue, 153000 Ivanovo, Russia
| | - Roman S Pavelyev
- Kazan Federal University, 18 Kremlevskaya st., 420008 Kazan, Russia
| | - Ilmir R Gilfanov
- Kazan State Medical University, 49 Butlerova st., 420012 Kazan, Russia
| | - Svetlana V Pestova
- Institute of Chemistry, Federal Research Center "Komi Scientific Centre", Ural Branch, Russian Academy of Sciences, ul. Pervomaiskaya 48, 167000 Syktyvkar, Russia
| | - Evgeny S Izmest'ev
- Institute of Chemistry, Federal Research Center "Komi Scientific Centre", Ural Branch, Russian Academy of Sciences, ul. Pervomaiskaya 48, 167000 Syktyvkar, Russia
| | - Svetlana A Rubtsova
- Institute of Chemistry, Federal Research Center "Komi Scientific Centre", Ural Branch, Russian Academy of Sciences, ul. Pervomaiskaya 48, 167000 Syktyvkar, Russia
| | - Airat R Kayumov
- Kazan Federal University, 18 Kremlevskaya st., 420008 Kazan, Russia
| | - Sergei V Kiselev
- Kazan State Medical University, 49 Butlerova st., 420012 Kazan, Russia
| | - Zulfiya R Azizova
- Kazan State Medical University, 49 Butlerova st., 420012 Kazan, Russia
| | | | - Sergey V Efimov
- Kazan Federal University, 18 Kremlevskaya st., 420008 Kazan, Russia
| | | | - Ilya A Khodov
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, 1 Akademicheskaya st., 153045 Ivanovo, Russia
| | - Liliya E Nikitina
- Kazan State Medical University, 49 Butlerova st., 420012 Kazan, Russia; Kazan Federal University, 18 Kremlevskaya st., 420008 Kazan, Russia
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10
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Effect of meso-substituents and solvent on the photo- and thermal stability of BODIPY dyes. J Photochem Photobiol A Chem 2022. [DOI: 10.1016/j.jphotochem.2021.113620] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Martynov VI, Pakhomov AA. BODIPY derivatives as fluorescent reporters of molecular activities in living cells. RUSSIAN CHEMICAL REVIEWS 2021. [DOI: 10.1070/rcr4985] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Abstract
Fluorescent compounds have become indispensable tools for imaging molecular activities in the living cell. 4,4-Difluoro-4-bora-3a,4a-diaza-s-indacene (BODIPY) is currently one of the most popular fluorescent reporters due to its unique photophysical properties. This review provides a general survey and presents a summary of recent advances in the development of new BODIPY-based cellular biomarkers and biosensors. The review starts with the consideration of the properties of BODIPY derivatives required for their application as cellular reporters. Then review provides examples of the design of sensors for different biologically important molecules, ions, membrane potential, temperature and viscosity defining the live cell status. Special attention is payed to BODPY-based phototransformable reporters.
The bibliography includes 339 references.
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Guseva GB, Antina EV, Berezin MB, Pavelyev RS, Kayumov AR, Ostolopovskaya OV, Gilfanov IR, Frolova LL, Kutchin AV, Akhverdiev RF, Lisovskaya SA, Trizna EY, Lodochnikova OA, Islamov DR, Efimov SV, Klochkov VV, Khodov IA, Boichuk SV, Nikitina LE. Design, Spectral Characteristics, and Possibilities for Practical Application of BODIPY FL-Labeled Monoterpenoid. ACS APPLIED BIO MATERIALS 2021; 4:6227-6235. [PMID: 35006906 DOI: 10.1021/acsabm.1c00550] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
This article describes the design and biological properties of a BODIPY FL-labeled monoterpenoid BF2-meso-(4-((1″R)-6″,6″-dimethylbicyclo[3.1.1]hept-2″-ene-2″)yl-methoxycarbonylpropyl)-3,3',5,5'-tetramethyl-2,2'-dipyrromethene conjugate (BODIPYmyrt). The fluorophore was characterized using X-ray, NMR, MS, and UV/vis spectroscopy. The conjugate exhibits a high quantum yield (to ∼100%) in the region 515-518 nm. BODIPYmyrt effectively penetrates the membranes of the bacterial and fungal cells and therefore can be used to examine the features of a broad spectrum of Gram-positive and Gram-negative bacteria and pathogenic fungi as well. Moreover, BODIPYmyrt exhibits a moderate tropism to the subcellular structures in mammalian cells (e.g., mitochondria), thereby providing an attractive scaffold for fluorophores to examine these particular organelles.
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Affiliation(s)
- Galina B Guseva
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences (ISC RAS), 153045 Ivanovo, Russian Federation
| | - Elena V Antina
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences (ISC RAS), 153045 Ivanovo, Russian Federation
| | - Mikhail B Berezin
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences (ISC RAS), 153045 Ivanovo, Russian Federation
| | | | | | | | - Ilmir R Gilfanov
- Kazan State Medical University, 420012 Kazan, Russian Federation
| | - Larisa L Frolova
- Institute of Chemistry, Federal Research Center "Komi Scientific Centre", 167000 Syktyvkar, Russian Federation
| | - Alexander V Kutchin
- Institute of Chemistry, Federal Research Center "Komi Scientific Centre", 167000 Syktyvkar, Russian Federation
| | | | - Svetlana A Lisovskaya
- Kazan State Medical University, Scientific Research Institute of Epidemiology and Microbiology, 420012 Kazan, Russian Federation
| | - Elena Y Trizna
- Kazan Federal University, 420008 Kazan, Russian Federation
| | - Olga A Lodochnikova
- Kazan Federal University, 420008 Kazan, Russian Federation.,Arbuzov Institute of Organic and Physical Chemistry, Kazan Scientific Center of Russian Academy of Sciences, 420008 Kazan, Russian Federation
| | - Daut R Islamov
- Kazan Federal University, 420008 Kazan, Russian Federation.,Arbuzov Institute of Organic and Physical Chemistry, Kazan Scientific Center of Russian Academy of Sciences, 420008 Kazan, Russian Federation
| | | | | | - Ilya A Khodov
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences (ISC RAS), 153045 Ivanovo, Russian Federation.,Kazan Federal University, 420008 Kazan, Russian Federation
| | - Sergei V Boichuk
- Kazan State Medical University, 420012 Kazan, Russian Federation
| | - Liliya E Nikitina
- Kazan Federal University, 420008 Kazan, Russian Federation.,Kazan State Medical University, 420012 Kazan, Russian Federation
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Antina LA, Ksenofontov AA, Kazak AV, Usol’tseva NV, Antina EV, Berezin MB. Effect of ms-substitution on aggregation behavior and spectroscopic properties of BODIPY dyes in aqueous solution, Langmuir-Schaefer and poly(methyl methacrylate) thin films. Colloids Surf A Physicochem Eng Asp 2021. [DOI: 10.1016/j.colsurfa.2021.126449] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Guseva G, Antina E, Berezin M, Lisovskaya S, Pavelyev R, Kayumov A, Lodochnikova O, Islamov D, Usachev K, Boichuk S, Nikitina L. Spectroscopic and In Vitro Investigations of Boron(III) Complex with Meso-4-Methoxycarbonylpropylsubstituted Dipyrromethene for Fluorescence Bioimaging Applications. Molecules 2020; 25:molecules25194541. [PMID: 33023057 PMCID: PMC7582871 DOI: 10.3390/molecules25194541] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2020] [Revised: 09/28/2020] [Accepted: 09/30/2020] [Indexed: 11/16/2022] Open
Abstract
This study focuses on the behavior of a new fluorescent marker for labeling individual biomolecules and staining cell organelles developed on a meso-substituted BODIPY platform. Boron(III) complex with meso-4-methoxycarbonylpropylsubstituted 3,3’,5,5’-tetramethyl-2,2′-dipyrromethene has been synthesized and identified via visible, UV-, NMR- and MS-spectra X-ray. The behavior of fluorophore in solutions has been studied with various experimental techniques. It has been found that luminophore exhibits a high quantum yield (almost ~100–75%) in the blue-green region (513–520 nm) and has high photostability. In addition, biological analysis indicates that the fluorophore exhibits a tendency to effectively penetrate into cell membranes. On the other hand, the proposed BODIPY can be used to study the significant differences among a large number of pathogens of mycotic infections, as well as to visualize structural changes in the plasma membrane, which is necessary for the clearance of mammalian cells undergoing apoptotic cell death.
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Affiliation(s)
- Galina Guseva
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, 1 Akademicheskaya st., 153045 Ivanovo, Russia; (E.A.); (M.B.)
- Correspondence:
| | - Elena Antina
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, 1 Akademicheskaya st., 153045 Ivanovo, Russia; (E.A.); (M.B.)
| | - Mikhail Berezin
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, 1 Akademicheskaya st., 153045 Ivanovo, Russia; (E.A.); (M.B.)
| | - Svetlana Lisovskaya
- Kazan State Medical University, 49 Butlerova st., 420012 Kazan, Russia; (S.L.); (S.B.); (L.N.)
- Scientific Research Institute of Epidemiology and Microbiology, 67 Bolshaya Krasnaya st., 420015 Kazan, Russia
| | - Roman Pavelyev
- Kazan Federal University, 18 Kremlyovskaya st., 420008 Kazan, Russia; (R.P.); (A.K.); (O.L.); (D.I.); (K.U.)
| | - Airat Kayumov
- Kazan Federal University, 18 Kremlyovskaya st., 420008 Kazan, Russia; (R.P.); (A.K.); (O.L.); (D.I.); (K.U.)
| | - Olga Lodochnikova
- Kazan Federal University, 18 Kremlyovskaya st., 420008 Kazan, Russia; (R.P.); (A.K.); (O.L.); (D.I.); (K.U.)
- Arbuzov Institute of Organic and Physical Chemistry, FRC Kazan Scientific Center, Russian Academy of Sciences, 8 Arbuzov, 420088 Kazan, Russia
| | - Daut Islamov
- Kazan Federal University, 18 Kremlyovskaya st., 420008 Kazan, Russia; (R.P.); (A.K.); (O.L.); (D.I.); (K.U.)
- Arbuzov Institute of Organic and Physical Chemistry, FRC Kazan Scientific Center, Russian Academy of Sciences, 8 Arbuzov, 420088 Kazan, Russia
| | - Konstantin Usachev
- Kazan Federal University, 18 Kremlyovskaya st., 420008 Kazan, Russia; (R.P.); (A.K.); (O.L.); (D.I.); (K.U.)
| | - Sergei Boichuk
- Kazan State Medical University, 49 Butlerova st., 420012 Kazan, Russia; (S.L.); (S.B.); (L.N.)
| | - Liliya Nikitina
- Kazan State Medical University, 49 Butlerova st., 420012 Kazan, Russia; (S.L.); (S.B.); (L.N.)
- Kazan Federal University, 18 Kremlyovskaya st., 420008 Kazan, Russia; (R.P.); (A.K.); (O.L.); (D.I.); (K.U.)
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