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Sun Q, Hao Y, Liu Y, Cui M, Zhang G, Yu W, Luo L. Identification and Characterization of Polyamine Metabolism in Citrus in Response to ' Candidatus Liberibacter asiaticus' Infection. PHYTOPATHOLOGY 2024; 114:1380-1392. [PMID: 38349804 DOI: 10.1094/phyto-04-23-0114-r] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/15/2024]
Abstract
Citrus Huanglongbing, one of the most devastating citrus diseases, is caused by 'Candidatus Liberibacter asiaticus' (CLas). Polyamines are aliphatic nitrogen-containing compounds that play important roles in disease resistance and are synthesized primarily by two pathways: an arginine decarboxylation pathway and an ornithine decarboxylation pathway. However, it is unclear whether polyamines play a role in the tolerance of citrus to infection by CLas and, if so, whether one or both of the core polyamine metabolic pathways are important. We used high-performance liquid chromatography and ultra-performance liquid chromatography-quadrupole time-of-flight mass spectrometry to detect the contents of nine polyamine metabolism-related compounds in six citrus cultivars with varying levels of tolerance to CLas. We also systematically detected the changes in polyamine metabolism-related compounds and H2O2 contents and compared the gene expression levels and the activities of enzymes involved in the polyamine metabolic pathway among healthy, asymptomatic, and symptomatic leaves of Newhall navel oranges infected with CLas. The tolerant and moderately tolerant varieties showed higher polyamine metabolism-related compound levels than those of susceptible varieties. Compared with the healthy group, the symptomatic group showed significantly increased contents of arginine, ornithine, γ-aminobutyric acid, and putrescine by approximately 180, 19, 1.5, and 0.2 times, respectively, and upregulated expression of biosynthetic genes. Arginase and ornithine decarboxylase enzyme activities were the highest in the symptomatic group, whereas arginine decarboxylase and agmatine deiminase enzyme activities were the highest in the asymptomatic group. The two polyamine biosynthetic pathways showed different trends with the increase of the CLas titer, indicating that polyamines were mainly synthesized through the arginine decarboxylase pathway in the asymptomatic leaves and were synthesized via the ornithine decarboxylase pathway in symptomatic leaves. These findings provide new insight into the changes in polyamine metabolism in citrus infected with CLas.
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Affiliation(s)
- Qifang Sun
- State Key Laboratory of Food Science and Resources, Nanchang University, Nanchang 330047, China
| | - Yingbin Hao
- School of Life Sciences, Nanchang University, Nanchang 330031, China
| | - Yongquan Liu
- College of Life Sciences, Gannan Normal University, Ganzhou 341000, China
| | - Meng Cui
- School of Life Sciences, Nanchang University, Nanchang 330031, China
| | - Gaowei Zhang
- School of Life Sciences, Nanchang University, Nanchang 330031, China
| | - Wenjie Yu
- School of Life Sciences, Nanchang University, Nanchang 330031, China
| | - Liping Luo
- School of Food and Health, Beijing Technology and Business University, Beijing 100048, China
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Jia HH, Xu YT, Yin ZJ, Qing M, Xie KD, Guo WW, Wu XM. Genome-wide identification of the C2H2-Zinc finger gene family and functional validation of CsZFP7 in citrus nucellar embryogenesis. PLANT REPRODUCTION 2023; 36:287-300. [PMID: 37247027 DOI: 10.1007/s00497-023-00470-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2023] [Accepted: 05/15/2023] [Indexed: 05/30/2023]
Abstract
KEY MESSAGE Genome-wide identification of C2H2-ZF gene family in the poly- and mono-embryonic citrus species and validation of the positive role of CsZFP7 in sporophytic apomixis. The C2H2 zinc finger (C2H2-ZF) gene family is involved in plant vegetative and reproductive development. Although a large number of C2H2 zinc-finger proteins (C2H2-ZFPs) have been well characterized in some horticultural plants, little is known about the C2H2-ZFPs and their function in citrus. In this work, we performed a genome-wide sequence analysis and identified 97 and 101 putative C2H2-ZF gene family members in the genomes of sweet orange (C. sinensis, poly-embryonic) and pummelo (C. grandis, mono-embryonic), respectively. Phylogenetic analysis categorized citrus C2H2-ZF gene family into four clades, and their possible functions were inferred. According to the numerous regulatory elements on promoter, citrus C2H2-ZFPs can be divided into five different regulatory function types that indicate functional differentiation. RNA-seq data revealed 20 differentially expressed C2H2-ZF genes between poly-embryonic and mono-embryonic ovules at two stages of citrus nucellar embryogenesis, among them CsZFP52 specifically expressed in mono-embryonic pummelo ovules, while CsZFP7, 37, 44, 45, 67 and 68 specifically expressed in poly-embryonic sweet orange ovules. RT-qPCR further validated that CsZFP7 specifically expressed at higher levels in poly-embryonic ovules, and down-regulation of CsZFP7 in the poly-embryonic mini citrus (Fortunella hindsii) increased rate of mono-embryonic seeds compared with the wild type, indicating the regulatory potential of CsZFP7 in nucellar embryogenesis of citrus. This work provided a comprehensive analysis of C2H2-ZF gene family in citrus, including genome organization and gene structure, phylogenetic relationships, gene duplications, possible cis-elements on promoter regions and expression profiles, especially in the poly- and mono-embryogenic ovules, and suggested that CsZFP7 is involved in nucellar embryogenesis.
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Affiliation(s)
- Hui-Hui Jia
- National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070, China
| | - Yuan-Tao Xu
- National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070, China
| | - Zhu-Jun Yin
- National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070, China
| | - Mei Qing
- National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070, China
| | - Kai-Dong Xie
- National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070, China
| | - Wen-Wu Guo
- National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070, China
| | - Xiao-Meng Wu
- National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070, China.
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Liu L, Wang D, Zhang C, Liu H, Guo H, Cheng H, Liu E, Su X. The heat shock factor GhHSFA4a positively regulates cotton resistance to Verticillium dahliae. FRONTIERS IN PLANT SCIENCE 2022; 13:1050216. [PMID: 36407619 PMCID: PMC9669655 DOI: 10.3389/fpls.2022.1050216] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2022] [Accepted: 10/19/2022] [Indexed: 05/16/2023]
Abstract
Heat shock factors (HSFs) play a crucial role in the environmental stress responses of numerous plant species, including defense responses to pathogens; however, their role in cotton resistance to Verticillium dahliae remains unclear. We have previously identified several differentially expressed genes (DEGs) in Arabidopsis thaliana after inoculation with V. dahliae. Here, we discovered that GhHSFA4a in Gossypium hirsutum (cotton) after inoculation with V. dahliae shares a high identity with a DEG in A. thaliana in response to V. dahliae infection. Quantitative real-time PCR (qRT-PCR) analysis indicated that GhHSFA4a expression was rapidly induced by V. dahliae and ubiquitous in cotton roots, stems, and leaves. In a localization analysis using transient expression, GhHSFA4a was shown to be localized to the nucleus. Virus-induced gene silencing (VIGS) revealed that downregulation of GhHSFA4a significantly increased cotton susceptibility to V. dahliae. To investigate GhHSFA4a-mediated defense, 814 DEGs were identified between GhHSFA4a-silenced plants and controls using comparative RNA-seq analysis. The Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis showed that DEGs were enriched in "flavonoid biosynthesis", "sesquiterpenoid and triterpenoid biosynthesis", "linoleic acid metabolism" and "alpha-linolenic acid metabolism". The expression levels of marker genes for these four pathways were triggered after inoculation with V. dahliae. Moreover, GhHSFA4a-overexpressing lines of A. thaliana displayed enhanced resistance against V. dahliae compared to that of the wild type. These results indicate that GhHSFA4a is involved in the synthesis of secondary metabolites and signal transduction, which are indispensable for innate immunity against V. dahliae in cotton.
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Affiliation(s)
- Lu Liu
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Di Wang
- Center for Advanced Measurement Science, National Institute of Metrology, Beijing, China
| | - Chao Zhang
- State Key Laboratory of North China Crop Improvement and Regulation, College of Life Science, Hebei Agricultural University, Baoding, China
| | - Haiyang Liu
- Institute of Plant Protection, Xinjiang Academy of Agricultural Sciences, Urumqi, China
| | - Huiming Guo
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, China
- Hainan Yazhou Bay Seed Lab, Sanya, China
| | - Hongmei Cheng
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, China
- Hainan Yazhou Bay Seed Lab, Sanya, China
| | - Enliang Liu
- Institute of Grain Crops, Xinjiang Academy of Agricultural ScienceS, Urumqi, China
- *Correspondence: Xiaofeng Su, ; Enliang Liu,
| | - Xiaofeng Su
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, China
- Hainan Yazhou Bay Seed Lab, Sanya, China
- *Correspondence: Xiaofeng Su, ; Enliang Liu,
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Gao S, Wang F, Niran J, Li N, Yin Y, Yu C, Jiao C, Yao M. Transcriptome analysis reveals defense-related genes and pathways against Xanthomonas campestris pv. vesicatoria in pepper (Capsicum annuum L.). PLoS One 2021; 16:e0240279. [PMID: 33705404 PMCID: PMC7951875 DOI: 10.1371/journal.pone.0240279] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2020] [Accepted: 02/20/2021] [Indexed: 11/21/2022] Open
Abstract
Bacterial spot (BS), incited by Xanthomonas campestris pv. vesicatoria (Xcv), is one of the most serious diseases of pepper. For a comparative analysis of defense responses to Xcv infection, we performed a transcriptomic analysis of a susceptible cultivar, ECW, and a resistant cultivar, VI037601, using the HiSeqTM 2500 sequencing platform. Approximately 120.23 G clean bases were generated from 18 libraries. From the libraries generated, a total of 38,269 expressed genes containing 11,714 novel genes and 11,232 differentially expressed genes (DEGs) were identified. Functional enrichment analysis revealed that the most noticeable pathways were plant-pathogen interaction, MAPK signaling pathway—plant, plant hormone signal transduction and secondary metabolisms. 1,599 potentially defense-related genes linked to pattern recognition receptors (PRRs), mitogen-activated protein kinase (MAPK), calcium signaling, and transcription factors may regulate pepper resistance to Xcv. Moreover, after Xcv inoculation, 364 DEGs differentially expressed only in VI037601 and 852 genes in both ECW and VI037601. Many of those genes were classified as NBS-LRR genes, oxidoreductase gene, WRKY and NAC transcription factors, and they were mainly involved in metabolic process, response to stimulus and biological regulation pathways. Quantitative RT-PCR of sixteen selected DEGs further validated the RNA-seq differential gene expression analysis. Our results will provide a valuable resource for understanding the molecular mechanisms of pepper resistance to Xcv infection and improving pepper resistance cultivars against Xcv.
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Affiliation(s)
- Shenghua Gao
- Hubei Key Laboratory of Vegetable Germplasm Enhancement and Genetic Improvement, Cash Crops Research Institute, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, China
| | - Fei Wang
- Hubei Key Laboratory of Vegetable Germplasm Enhancement and Genetic Improvement, Cash Crops Research Institute, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, China
| | | | - Ning Li
- Hubei Key Laboratory of Vegetable Germplasm Enhancement and Genetic Improvement, Cash Crops Research Institute, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, China
| | - Yanxu Yin
- Hubei Key Laboratory of Vegetable Germplasm Enhancement and Genetic Improvement, Cash Crops Research Institute, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, China
| | - Chuying Yu
- Hubei Key Laboratory of Vegetable Germplasm Enhancement and Genetic Improvement, Cash Crops Research Institute, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, China
| | - Chunhai Jiao
- Hubei Key Laboratory of Vegetable Germplasm Enhancement and Genetic Improvement, Cash Crops Research Institute, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, China
- * E-mail: (MY); (CJ)
| | - Minghua Yao
- Hubei Key Laboratory of Vegetable Germplasm Enhancement and Genetic Improvement, Cash Crops Research Institute, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, China
- * E-mail: (MY); (CJ)
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Brassica napus Infected with Leptosphaeria maculans. Genes (Basel) 2019; 10:genes10040296. [PMID: 30979089 PMCID: PMC6523698 DOI: 10.3390/genes10040296] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2019] [Revised: 04/10/2019] [Accepted: 04/10/2019] [Indexed: 01/07/2023] Open
Abstract
Alternative splicing (AS) is a post-transcriptional regulatory process that enhances transcriptome diversity, thereby affecting plant growth, development, and stress responses. To identify the new transcripts and changes in the isoform-level AS landscape of rapeseed (Brassica napus) infected with the fungal pathogen Leptosphaeria maculans, we compared eight RNA-seq libraries prepared from mock-inoculated and inoculated B. napus cotyledons and stems. The AS events that occurred in stems were almost the same as those in cotyledons, with intron retention representing the most common AS pattern. We identified 1892 differentially spliced genes between inoculated and uninoculated plants. We performed a weighted gene co-expression network analysis (WGCNA) to identify eight co-expression modules and their Hub genes, which are the genes most connected with other genes within each module. There are nine Hub genes, encoding nine transcription factors, which represent key regulators of each module, including members of the NAC, WRKY, TRAF, AP2/ERF-ERF, C2H2, C2C2-GATA, HMG, bHLH, and C2C2-CO-like families. Finally, 52 and 117 alternatively spliced genes in cotyledons and stems were also differentially expressed between mock-infected and infected materials, such as HMG and C2C2-Dof; which have dual regulatory mechanisms in response to L. maculans. The splicing of the candidate genes identified in this study could be exploited to improve resistance to L. maculans.
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Chiesa MA, Roeschlin RA, Favaro MA, Uviedo F, Campos‐Beneyto L, D’Andrea R, Gadea J, Marano MR. Plant responses underlying nonhost resistance of Citrus limon against Xanthomonas campestris pv. campestris. MOLECULAR PLANT PATHOLOGY 2019; 20:254-269. [PMID: 30260546 PMCID: PMC6637874 DOI: 10.1111/mpp.12752] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Citrus is an economically important fruit crop that is severely afflicted by citrus canker, a disease caused by Xanthomonas citri ssp. citri (X. citri); thus, new sustainable strategies to manage this disease are needed. Although all Citrus spp. are susceptible to this pathogen, they are resistant to other Xanthomonas species, exhibiting non-host resistance (NHR), for example, to the brassica pathogen X. campestris pv. campestris (Xcc) and a gene-for-gene host defence response (HDR) to the canker-causing X. fuscans ssp. aurantifolii (Xfa) strain C. Here, we examine the plant factors associated with the NHR of C. limon to Xcc. We show that Xcc induced asymptomatic type I NHR, allowing the bacterium to survive in a stationary phase in the non-host tissue. In C. limon, this NHR shared some similarities with HDR; both defence responses interfered with biofilm formation, and were associated with callose deposition, induction of the salicylic acid (SA) signalling pathway and the repression of abscisic acid (ABA) signalling. However, greater stomatal closure was seen during NHR than during HDR, together with different patterns of accumulation of reactive oxygen species and phenolic compounds and the expression of secondary metabolites. Overall, these differences, independent of Xcc type III effector proteins, could contribute to the higher protection elicited against canker development. We propose that Xcc may have the potential to steadily activate inducible defence responses. An understanding of these plant responses (and their triggers) may allow the development of a sustained and sustainable resistance to citrus canker.
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Affiliation(s)
- María A. Chiesa
- Instituto de Biología Molecular y Celular de Rosario (IBR)—Consejo Nacional de Investigaciones Científicas y Tecnológicas (CONICET)Ocampo y Esmeralda S/NS2002LRKRosarioArgentina
- Área Virología, Facultad de Ciencias Bioquímicas y FarmacéuticasUniversidad Nacional de Rosario (UNR)Suipacha 590S2002LRKRosarioArgentina
- Laboratorio de Fisiología VegetalInstituto de Investigaciones en Ciencias Agrarias de Rosario (IICAR)‐UNR/CONICETParque Villarino S/N, 2125 ZavallaSanta FeArgentina
| | - Roxana A. Roeschlin
- Instituto de Biología Molecular y Celular de Rosario (IBR)—Consejo Nacional de Investigaciones Científicas y Tecnológicas (CONICET)Ocampo y Esmeralda S/NS2002LRKRosarioArgentina
- Área Virología, Facultad de Ciencias Bioquímicas y FarmacéuticasUniversidad Nacional de Rosario (UNR)Suipacha 590S2002LRKRosarioArgentina
- Facultad de Ciencias AgropecuariasUniversidad Católica de Santa FeLudueña 612, S3560DYR ReconquistaSanta FeArgentina
| | - María A. Favaro
- Instituto de Biología Molecular y Celular de Rosario (IBR)—Consejo Nacional de Investigaciones Científicas y Tecnológicas (CONICET)Ocampo y Esmeralda S/NS2002LRKRosarioArgentina
- Área Virología, Facultad de Ciencias Bioquímicas y FarmacéuticasUniversidad Nacional de Rosario (UNR)Suipacha 590S2002LRKRosarioArgentina
- Facultad de Ciencias AgrariasUniversidad Nacional del LitoralProducción Vegetal, Kreder 2805, 3080 HOF EsperanzaSanta FeArgentina
| | - Facundo Uviedo
- Instituto de Biología Molecular y Celular de Rosario (IBR)—Consejo Nacional de Investigaciones Científicas y Tecnológicas (CONICET)Ocampo y Esmeralda S/NS2002LRKRosarioArgentina
| | - Laura Campos‐Beneyto
- Instituto de Biología Molecular y Celular de Plantas (IBMCP)Universidad Politécnica de Valencia‐C.S.I.CIngeniero Fausto Elio, S/N46022ValenciaEspaña
| | - Rodrigo D’Andrea
- Instituto de Biología Molecular y Celular de Rosario (IBR)—Consejo Nacional de Investigaciones Científicas y Tecnológicas (CONICET)Ocampo y Esmeralda S/NS2002LRKRosarioArgentina
- Área Virología, Facultad de Ciencias Bioquímicas y FarmacéuticasUniversidad Nacional de Rosario (UNR)Suipacha 590S2002LRKRosarioArgentina
| | - José Gadea
- Instituto de Biología Molecular y Celular de Plantas (IBMCP)Universidad Politécnica de Valencia‐C.S.I.CIngeniero Fausto Elio, S/N46022ValenciaEspaña
| | - María R. Marano
- Instituto de Biología Molecular y Celular de Rosario (IBR)—Consejo Nacional de Investigaciones Científicas y Tecnológicas (CONICET)Ocampo y Esmeralda S/NS2002LRKRosarioArgentina
- Área Virología, Facultad de Ciencias Bioquímicas y FarmacéuticasUniversidad Nacional de Rosario (UNR)Suipacha 590S2002LRKRosarioArgentina
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Phytohormone participation during Citrus sinensis non-host response to Xanthomonas campestris pv. vesicatoria. ACTA ACUST UNITED AC 2018. [DOI: 10.1016/j.plgene.2018.05.006] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Lee HA, Lee HY, Seo E, Lee J, Kim SB, Oh S, Choi E, Choi E, Lee SE, Choi D. Current Understandings of Plant Nonhost Resistance. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2017; 30:5-15. [PMID: 27925500 DOI: 10.1094/mpmi-10-16-0213-cr] [Citation(s) in RCA: 73] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Nonhost resistance, a resistance of plant species against all nonadapted pathogens, is considered the most durable and efficient immune system of plants but yet remains elusive. The underlying mechanism of nonhost resistance has been investigated at multiple levels of plant defense for several decades. In this review, we have comprehensively surveyed the latest literature on nonhost resistance in terms of preinvasion, metabolic defense, pattern-triggered immunity, effector-triggered immunity, defense signaling, and possible application in crop protection. Overall, we summarize the current understanding of nonhost resistance mechanisms. Pre- and postinvasion is not much deviated from the knowledge on host resistance, except for a few specific cases. Further insights on the roles of the pattern recognition receptor gene family, multiple interactions between effectors from nonadapted pathogen and plant factors, and plant secondary metabolites in host range determination could expand our knowledge on nonhost resistance and provide efficient tools for future crop protection using combinational biotechnology approaches. [Formula: see text] Copyright © 2017 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .
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Affiliation(s)
- Hyun-Ah Lee
- Department of Plant Science, Plant Genomics and Breeding Institute, College of Agriculture and Life Sciences, Seoul National University, Seoul, 151-921, Republic of Korea
| | - Hye-Young Lee
- Department of Plant Science, Plant Genomics and Breeding Institute, College of Agriculture and Life Sciences, Seoul National University, Seoul, 151-921, Republic of Korea
| | - Eunyoung Seo
- Department of Plant Science, Plant Genomics and Breeding Institute, College of Agriculture and Life Sciences, Seoul National University, Seoul, 151-921, Republic of Korea
| | - Joohyun Lee
- Department of Plant Science, Plant Genomics and Breeding Institute, College of Agriculture and Life Sciences, Seoul National University, Seoul, 151-921, Republic of Korea
| | - Saet-Byul Kim
- Department of Plant Science, Plant Genomics and Breeding Institute, College of Agriculture and Life Sciences, Seoul National University, Seoul, 151-921, Republic of Korea
| | - Soohyun Oh
- Department of Plant Science, Plant Genomics and Breeding Institute, College of Agriculture and Life Sciences, Seoul National University, Seoul, 151-921, Republic of Korea
| | - Eunbi Choi
- Department of Plant Science, Plant Genomics and Breeding Institute, College of Agriculture and Life Sciences, Seoul National University, Seoul, 151-921, Republic of Korea
| | - Eunhye Choi
- Department of Plant Science, Plant Genomics and Breeding Institute, College of Agriculture and Life Sciences, Seoul National University, Seoul, 151-921, Republic of Korea
| | - So Eui Lee
- Department of Plant Science, Plant Genomics and Breeding Institute, College of Agriculture and Life Sciences, Seoul National University, Seoul, 151-921, Republic of Korea
| | - Doil Choi
- Department of Plant Science, Plant Genomics and Breeding Institute, College of Agriculture and Life Sciences, Seoul National University, Seoul, 151-921, Republic of Korea
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Heat shock transcription factors in banana: genome-wide characterization and expression profile analysis during development and stress response. Sci Rep 2016; 6:36864. [PMID: 27857174 PMCID: PMC5114564 DOI: 10.1038/srep36864] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2016] [Accepted: 10/21/2016] [Indexed: 12/01/2022] Open
Abstract
Banana (Musa acuminata) is one of the most popular fresh fruits. However, the rapid spread of fungal pathogen Fusarium oxysporum f. sp. cubense (Foc) in tropical areas severely affected banana growth and production. Thus, it is very important to identify candidate genes involved in banana response to abiotic stress and pathogen infection, as well as the molecular mechanism and possible utilization for genetic breeding. Heat stress transcription factors (Hsfs) are widely known for their common involvement in various abiotic stresses and plant-pathogen interaction. However, no MaHsf has been identified in banana, as well as its possible role. In this study, genome-wide identification and further analyses of evolution, gene structure and conserved motifs showed closer relationship of them in every subgroup. The comprehensive expression profiles of MaHsfs revealed the tissue- and developmental stage-specific or dependent, as well as abiotic and biotic stress-responsive expressions of them. The common regulation of several MaHsfs by abiotic and biotic stress indicated the possible roles of them in plant stress responses. Taken together, this study extended our understanding of MaHsf gene family and identified some candidate MaHsfs with specific expression profiles, which may be used as potential candidates for genetic breeding in banana.
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Petrocelli S, Arana MR, Cabrini MN, Casabuono AC, Moyano L, Beltramino M, Moreira LM, Couto AS, Orellano EG. Deletion of pilA, a Minor Pilin-Like Gene, from Xanthomonas citri subsp. citri Influences Bacterial Physiology and Pathogenesis. Curr Microbiol 2016; 73:904-914. [PMID: 27664015 DOI: 10.1007/s00284-016-1138-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2016] [Accepted: 09/13/2016] [Indexed: 10/21/2022]
Abstract
Type IV pili (Tfp) are widely distributed adhesins of bacterial surfaces. In plant pathogenic bacteria, Tfp are involved in host colonization and pathogenesis. Xanthomonas citri subsp. citri (Xcc) is the phytopathogen responsible for citrus canker disease. In this work, three Tfp structural genes, fimA, fimA1, and pilA from Xcc were studied. A pilA mutant strain from Xcc (XccΔpilA) was constructed and differences in physiological features, such as motilities, adhesion, and biofilm formation, were observed. A structural study of the purified Tfp fractions from Xcc wild-type and Xcc∆pilA showed that pilins are glycosylated in both strains and that FimA and FimA1 are the main structural components of the pili. Furthermore, smaller lesion symptoms and reduced bacterial growth were produced by Xcc∆pilA in orange plants compared to the wild-type strain. These results indicate that the minor pilin-like gene, pilA, is involved in Tfp performance during the infection process.
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Affiliation(s)
- Silvana Petrocelli
- Facultad de Ciencias Bioquímicas y Farmacéuticas, Instituto de Biología Molecular y Celular de Rosario (IBR), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Universidad Nacional de Rosario, Suipacha 531, S2002LRK, Rosario, Argentina
| | - Maite R Arana
- Facultad de Ciencias Bioquímicas y Farmacéuticas, Instituto de Biología Molecular y Celular de Rosario (IBR), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Universidad Nacional de Rosario, Suipacha 531, S2002LRK, Rosario, Argentina
| | - Marcela N Cabrini
- Departamento de Química Orgánica, Facultad de Ciencias Exactas y Naturales, Centro de Investigaciones en Hidratos de Carbono, Universidad de Buenos Aires, 1428, Buenos Aires, Argentina
| | - Adriana C Casabuono
- Departamento de Química Orgánica, Facultad de Ciencias Exactas y Naturales, Centro de Investigaciones en Hidratos de Carbono, Universidad de Buenos Aires, 1428, Buenos Aires, Argentina
| | - Laura Moyano
- Facultad de Ciencias Bioquímicas y Farmacéuticas, Instituto de Biología Molecular y Celular de Rosario (IBR), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Universidad Nacional de Rosario, Suipacha 531, S2002LRK, Rosario, Argentina
| | - Matías Beltramino
- Facultad de Ciencias Bioquímicas y Farmacéuticas, Instituto de Biología Molecular y Celular de Rosario (IBR), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Universidad Nacional de Rosario, Suipacha 531, S2002LRK, Rosario, Argentina
| | - Leandro M Moreira
- Departamento de Ciências Biológicas (DECBI), Instituto de Ciências Exatas e Biológicas, Campus Morro do Cruzeiro, Universidade Federal de Ouro Preto, Ouro Preto, MG, Brazil
- Núcleo de Pesquisas em Ciências Biológicas (NUPEB), Universidade Federal de Ouro Preto, Ouro Preto, MG, Brazil
| | - Alicia S Couto
- Departamento de Química Orgánica, Facultad de Ciencias Exactas y Naturales, Centro de Investigaciones en Hidratos de Carbono, Universidad de Buenos Aires, 1428, Buenos Aires, Argentina
| | - Elena G Orellano
- Facultad de Ciencias Bioquímicas y Farmacéuticas, Instituto de Biología Molecular y Celular de Rosario (IBR), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Universidad Nacional de Rosario, Suipacha 531, S2002LRK, Rosario, Argentina.
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Hu Y, Duan S, Zhang Y, Shantharaj D, Jones JB, Wang N. Temporal Transcription Profiling of Sweet Orange in Response to PthA4-Mediated Xanthomonas citri subsp. citri Infection. PHYTOPATHOLOGY 2016; 106:442-451. [PMID: 26780431 DOI: 10.1094/phyto-09-15-0201-r] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Citrus canker, caused by Xanthomonas citri subsp. citri, is a devastating disease of most commercial citrus varieties. In our previous study, we analyzed the transcriptional response of 'Valencia' sweet orange to X. citri subsp. citri wild-type and pthA4 mutant infection at 48 h postinoculation (hpi). Using microarray analysis, two PthA4 targets, CsLOB1 and CsSWEET1, were identified. We have shown that PthA4 binds to the effector binding element (EBE) of CsLOB1 and activates gene expression of this susceptibility gene. However, how PthA4 modulates host genes at different stages of infection remains to be determined. In this study, we compared the transcriptional profiles between citrus leaf tissue inoculated with Xcc306 and those inoculated with a pthA4-deletion mutant strain (Xcc306∆pthA4) at 6, 48, and 120 hpi. At both 48 and 120 hpi, the PthA4-mediated infection significantly upregulated expression of a variety of genes involved in cell-wall degradation and modification, DNA packaging, G-protein, protein synthesis, sucrose metabolism, and cell division functions, while the downregulated genes were mainly enriched in photosynthesis, transport, secondary metabolism, cytochrome P450, and various plant defense-associated mechanisms. To validate microarray results, gene expression of 26 genes representing genes associated with cell-wall-associated, immunity system, and carbohydrate metabolism was confirmed using quantitative reverse-transcription polymerase chain reaction. Expression patterns of these genes at 48 and 120 hpi were consistent with the microarray results. We also identified putative EBE for PthA4 (EBEPthA4) in the promoter regions of multiple genes upregulated by PthA4, to which PthA4 might bind directly to control their gene expression. Our study provided a dynamic picture of citrus genes regulated by PthA4 during the X. citri subsp. citri infection of citrus leaves at different stages. This study will be useful in further understanding the virulence mechanism of X. citri subsp. citri and identifying potential targets of PthA4.
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Affiliation(s)
- Yang Hu
- First, fourth, and fifth authors: Department of Plant Pathology, University of Florida, Gainesville 32611; and second, third, and sixth authors: Citrus Research and Education Center, Department of Microbiology and Cell Science, University of Florida, 700 Experiment Station Road, Lake Alfred 33850
| | - Shuo Duan
- First, fourth, and fifth authors: Department of Plant Pathology, University of Florida, Gainesville 32611; and second, third, and sixth authors: Citrus Research and Education Center, Department of Microbiology and Cell Science, University of Florida, 700 Experiment Station Road, Lake Alfred 33850
| | - Yunzeng Zhang
- First, fourth, and fifth authors: Department of Plant Pathology, University of Florida, Gainesville 32611; and second, third, and sixth authors: Citrus Research and Education Center, Department of Microbiology and Cell Science, University of Florida, 700 Experiment Station Road, Lake Alfred 33850
| | - Deepak Shantharaj
- First, fourth, and fifth authors: Department of Plant Pathology, University of Florida, Gainesville 32611; and second, third, and sixth authors: Citrus Research and Education Center, Department of Microbiology and Cell Science, University of Florida, 700 Experiment Station Road, Lake Alfred 33850
| | - Jeffrey B Jones
- First, fourth, and fifth authors: Department of Plant Pathology, University of Florida, Gainesville 32611; and second, third, and sixth authors: Citrus Research and Education Center, Department of Microbiology and Cell Science, University of Florida, 700 Experiment Station Road, Lake Alfred 33850
| | - Nian Wang
- First, fourth, and fifth authors: Department of Plant Pathology, University of Florida, Gainesville 32611; and second, third, and sixth authors: Citrus Research and Education Center, Department of Microbiology and Cell Science, University of Florida, 700 Experiment Station Road, Lake Alfred 33850
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12
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Daurelio LD, Tondo ML, Romero MS, Merelo P, Cortadi AA, Talón M, Tadeo FR, Orellano EG. Novel insights into the Citrus sinensis nonhost response suggest photosynthesis decline, abiotic stress networks and secondary metabolism modifications. FUNCTIONAL PLANT BIOLOGY : FPB 2015; 42:758-769. [PMID: 32480719 DOI: 10.1071/fp14307] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2014] [Accepted: 04/24/2015] [Indexed: 06/11/2023]
Abstract
Plants are constantly exposed to stress factors. Biotic stress is produced by living organisms such as pathogens, whereas abiotic stress by unfavourable environmental conditions. In Citrus species, one of the most important fruit crops in the world, these stresses generate serious limitations in productivity. Through biochemical and transcriptomic assays, we had previously characterised the Citrus sinensis (L.) Osbeck nonhost response to Xanthomonas campestris pv. vesicatoria (Doidge), in contrast to Asiatic citrus canker infection caused by Xanthomonas citri subsp. citri (Hasse). A hypersensitive response (HR) including changes in the expression of several transcription factors was reported. Here, a new exhaustive analysis of the Citrus sinensis transcriptomes previously obtained was performed, allowing us to detect the over-representation of photosynthesis, abiotic stress and secondary metabolism processes during the nonhost HR. The broad downregulation of photosynthesis-related genes was correlated with an altered photosynthesis physiology. The high number of heat shock proteins and genes related to abiotic stress, including aquaporins, suggests that stresses crosstalk. Additionally, the secondary metabolism exhibited lignin and carotenoid biosynthesis modifications and expression changes in the cell rescue GSTs. In conclusion, novel features of the Citrus nonhost HR, an important part of the plants' defence against disease that has yet to be fully exploited in plant breeding programs, are presented.
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Affiliation(s)
- Lucas D Daurelio
- Instituto de Biología Molecular y Celular de Rosario - Consejo Nacional de Investigaciones Científicas y Técnicas), Facultad de Ciencias Bioquímicas y Farmacéuticas (FBIOYF) - Universidad Nacional de Rosario (UNR), Suipacha 531 (S2002 LRK), Rosario, Santa Fe, Argentina
| | - M Laura Tondo
- Instituto de Biología Molecular y Celular de Rosario - Consejo Nacional de Investigaciones Científicas y Técnicas), Facultad de Ciencias Bioquímicas y Farmacéuticas (FBIOYF) - Universidad Nacional de Rosario (UNR), Suipacha 531 (S2002 LRK), Rosario, Santa Fe, Argentina
| | - M Soledad Romero
- Instituto de Agrobiotecnología de Rosario (INDEAR), Ocampo 210 bis, Predio CCT Rosario, (2000), Rosario, Santa Fe, Argentina
| | - Paz Merelo
- European Molecular Biology Laboratory, Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany
| | - Adriana A Cortadi
- Área de Biología Vegetal, FBIOYF - UNR, Suipacha 531 (S2002 LRK), Rosario, Santa Fe, Argentina
| | - Manuel Talón
- Centre de Genómica, Institut Valencià d'Investigacions Agràries, Apt. Oficial, 46113 Montcada, València, Spain
| | - Francisco R Tadeo
- Centre de Genómica, Institut Valencià d'Investigacions Agràries, Apt. Oficial, 46113 Montcada, València, Spain
| | - Elena G Orellano
- Instituto de Biología Molecular y Celular de Rosario - Consejo Nacional de Investigaciones Científicas y Técnicas), Facultad de Ciencias Bioquímicas y Farmacéuticas (FBIOYF) - Universidad Nacional de Rosario (UNR), Suipacha 531 (S2002 LRK), Rosario, Santa Fe, Argentina
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13
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Kraiselburd I, Daurelio LD, Tondo ML, Merelo P, Cortadi AA, Talón M, Tadeo FR, Orellano EG. The LOV protein of Xanthomonas citri subsp. citri plays a significant role in the counteraction of plant immune responses during citrus canker. PLoS One 2013; 8:e80930. [PMID: 24260514 PMCID: PMC3829917 DOI: 10.1371/journal.pone.0080930] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2013] [Accepted: 10/07/2013] [Indexed: 12/25/2022] Open
Abstract
Pathogens interaction with a host plant starts a set of immune responses that result in complex changes in gene expression and plant physiology. Light is an important modulator of plant defense response and recent studies have evidenced the novel influence of this environmental stimulus in the virulence of several bacterial pathogens. Xanthomonas citri subsp. citri is the bacterium responsible for citrus canker disease, which affects most citrus cultivars. The ability of this bacterium to colonize host plants is influenced by bacterial blue-light sensing through a LOV-domain protein and disease symptoms are considerably altered upon deletion of this protein. In this work we aimed to unravel the role of this photoreceptor during the bacterial counteraction of plant immune responses leading to citrus canker development. We performed a transcriptomic analysis in Citrus sinensis leaves inoculated with the wild type X. citri subsp. citri and with a mutant strain lacking the LOV protein by a cDNA microarray and evaluated the differentially regulated genes corresponding to specific biological processes. A down-regulation of photosynthesis-related genes (together with a corresponding decrease in photosynthesis rates) was observed upon bacterial infection, this effect being more pronounced in plants infected with the lov-mutant bacterial strain. Infection with this strain was also accompanied with the up-regulation of several secondary metabolism- and defense response-related genes. Moreover, we found that relevant plant physiological alterations triggered by pathogen attack such as cell wall fortification and tissue disruption were amplified during the lov-mutant strain infection. These results suggest the participation of the LOV-domain protein from X. citri subsp. citri in the bacterial counteraction of host plant defense response, contributing in this way to disease development.
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Affiliation(s)
- Ivana Kraiselburd
- Instituto de Biología Molecular y Celular de Rosario (IBR - CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas (FBIOYF - UNR), Rosario, Santa Fe, Argentina
| | - Lucas D. Daurelio
- Instituto de Biología Molecular y Celular de Rosario (IBR - CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas (FBIOYF - UNR), Rosario, Santa Fe, Argentina
| | - María Laura Tondo
- Instituto de Biología Molecular y Celular de Rosario (IBR - CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas (FBIOYF - UNR), Rosario, Santa Fe, Argentina
| | - Paz Merelo
- Centre de Genómica, Institut Valencià d'Investigacions Agràries (IVIA), Montcada (València), Spain
| | - Adriana A. Cortadi
- Área de Biología Vegetal, Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario (UNR), Rosario, Santa Fe, Argentina
| | - Manuel Talón
- Centre de Genómica, Institut Valencià d'Investigacions Agràries (IVIA), Montcada (València), Spain
| | - Francisco R. Tadeo
- Centre de Genómica, Institut Valencià d'Investigacions Agràries (IVIA), Montcada (València), Spain
| | - Elena G. Orellano
- Instituto de Biología Molecular y Celular de Rosario (IBR - CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas (FBIOYF - UNR), Rosario, Santa Fe, Argentina
- * E-mail:
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