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Jakab Á, Csillag K, Antal K, Boczonádi I, Kovács R, Pócsi I, Emri T. Total transcriptome response for tyrosol exposure in Aspergillus nidulans. Fungal Biol 2024; 128:1664-1674. [PMID: 38575239 DOI: 10.1016/j.funbio.2024.01.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2023] [Revised: 08/27/2023] [Accepted: 01/12/2024] [Indexed: 04/06/2024]
Abstract
Although tyrosol is a quorum-sensing molecule of Candida species, it has antifungal activity at supraphysiological concentrations. Here, we studied the effect of tyrosol on the physiology and genome-wide transcription of Aspergillus nidulans to gain insight into the background of the antifungal activity of this compound. Tyrosol efficiently reduced germination of conidia and the growth on various carbon sources at a concentration of 35 mM. The growth inhibition was fungistatic rather than fungicide on glucose and was accompanied with downregulation of 2199 genes related to e.g. mitotic cell cycle, glycolysis, nitrate and sulphate assimilation, chitin biosynthesis, and upregulation of 2250 genes involved in e.g. lipid catabolism, amino acid degradation and lactose utilization. Tyrosol treatment also upregulated genes encoding glutathione-S-transferases (GSTs), increased specific GST activities and the glutathione (GSH) content of the cells, suggesting that A. nidulans can detoxify tyrosol in a GSH-dependent manner even though this process was weak. Tyrosol did not induce oxidative stress in this species, but upregulated "response to nutrient levels", "regulation of nitrogen utilization", "carbon catabolite activation of transcription" and "autophagy" genes. Tyrosol may have disturbed the regulation and orchestration of cellular metabolism, leading to impaired use of nutrients, which resulted in growth reduction.
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Affiliation(s)
- Ágnes Jakab
- Department of Medical Microbiology, Faculty of Medicine, University of Debrecen, 4032, Debrecen, Hungary; Department of Molecular Biotechnology and Microbiology, Faculty of Science and Technology, University of Debrecen, 4032, Debrecen, Hungary.
| | - Kinga Csillag
- Department of Molecular Biotechnology and Microbiology, Faculty of Science and Technology, University of Debrecen, 4032, Debrecen, Hungary
| | - Károly Antal
- Department of Zoology, Faculty of Sciences, Eszterházy Károly Catholic University, 3300, Eger, Hungary
| | - Imre Boczonádi
- Department of Molecular Biotechnology and Microbiology, Faculty of Science and Technology, University of Debrecen, 4032, Debrecen, Hungary
| | - Renátó Kovács
- Department of Medical Microbiology, Faculty of Medicine, University of Debrecen, 4032, Debrecen, Hungary
| | - István Pócsi
- Department of Molecular Biotechnology and Microbiology, Faculty of Science and Technology, University of Debrecen, 4032, Debrecen, Hungary; HUN-REN-UD Fungal Stress Biology Research Group, 4032 Debrecen, Hungary
| | - Tamás Emri
- Department of Molecular Biotechnology and Microbiology, Faculty of Science and Technology, University of Debrecen, 4032, Debrecen, Hungary; HUN-REN-UD Fungal Stress Biology Research Group, 4032 Debrecen, Hungary
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Son YE, Yu JH, Park HS. Regulators of the Asexual Life Cycle of Aspergillus nidulans. Cells 2023; 12:1544. [PMID: 37296664 PMCID: PMC10253035 DOI: 10.3390/cells12111544] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2023] [Revised: 06/01/2023] [Accepted: 06/02/2023] [Indexed: 06/12/2023] Open
Abstract
The genus Aspergillus, one of the most abundant airborne fungi, is classified into hundreds of species that affect humans, animals, and plants. Among these, Aspergillus nidulans, as a key model organism, has been extensively studied to understand the mechanisms governing growth and development, physiology, and gene regulation in fungi. A. nidulans primarily reproduces by forming millions of asexual spores known as conidia. The asexual life cycle of A. nidulans can be simply divided into growth and asexual development (conidiation). After a certain period of vegetative growth, some vegetative cells (hyphae) develop into specialized asexual structures called conidiophores. Each A. nidulans conidiophore is composed of a foot cell, stalk, vesicle, metulae, phialides, and 12,000 conidia. This vegetative-to-developmental transition requires the activity of various regulators including FLB proteins, BrlA, and AbaA. Asymmetric repetitive mitotic cell division of phialides results in the formation of immature conidia. Subsequent conidial maturation requires multiple regulators such as WetA, VosA, and VelB. Matured conidia maintain cellular integrity and long-term viability against various stresses and desiccation. Under appropriate conditions, the resting conidia germinate and form new colonies, and this process is governed by a myriad of regulators, such as CreA and SocA. To date, a plethora of regulators for each asexual developmental stage have been identified and investigated. This review summarizes our current understanding of the regulators of conidial formation, maturation, dormancy, and germination in A. nidulans.
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Affiliation(s)
- Ye-Eun Son
- Major in Food Biomaterials, School of Food Science and Biotechnology, Kyungpook National University, Daegu 41566, Republic of Korea;
| | - Jae-Hyuk Yu
- Department of Bacteriology, Food Research Institute, University of Wisconsin-Madison, Madison, WI 53706, USA;
| | - Hee-Soo Park
- Major in Food Biomaterials, School of Food Science and Biotechnology, Kyungpook National University, Daegu 41566, Republic of Korea;
- Department of Integrative Biology, Kyungpook National University, Daegu 41566, Republic of Korea
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Cairns TC, de Kanter T, Zheng XZ, Zheng P, Sun J, Meyer V. Regression modelling of conditional morphogene expression links and quantifies the impact of growth rate, fitness and macromorphology with protein secretion in Aspergillus niger. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS 2023; 16:95. [PMID: 37268954 DOI: 10.1186/s13068-023-02345-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2023] [Accepted: 05/18/2023] [Indexed: 06/04/2023]
Abstract
BACKGROUND Filamentous fungi are used as industrial cell factories to produce a diverse portfolio of proteins, organic acids, and secondary metabolites in submerged fermentation. Generating optimized strains for maximum product titres relies on a complex interplay of molecular, cellular, morphological, and macromorphological factors that are not yet fully understood. RESULTS In this study, we generate six conditional expression mutants in the protein producing ascomycete Aspergillus niger and use them as tools to reverse engineer factors which impact total secreted protein during submerged growth. By harnessing gene coexpression network data, we bioinformatically predicted six morphology and productivity associated 'morphogenes', and placed them under control of a conditional Tet-on gene switch using CRISPR-Cas genome editing. Strains were phenotypically screened on solid and liquid media following titration of morphogene expression, generating quantitative measurements of growth rate, filamentous morphology, response to various abiotic perturbations, Euclidean parameters of submerged macromorphologies, and total secreted protein. These data were built into a multiple linear regression model, which identified radial growth rate and fitness under heat stress as positively correlated with protein titres. In contrast, diameter of submerged pellets and cell wall integrity were negatively associated with productivity. Remarkably, our model predicts over 60% of variation in A. niger secreted protein titres is dependent on these four variables, suggesting that they play crucial roles in productivity and are high priority processes to be targeted in future engineering programs. Additionally, this study suggests A. niger dlpA and crzA genes are promising new leads for enhancing protein titres during fermentation. CONCLUSIONS Taken together this study has identified several potential genetic leads for maximizing protein titres, delivered a suite of chassis strains with user controllable macromorphologies during pilot fermentation studies, and has quantified four crucial factors which impact secreted protein titres in A. niger.
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Affiliation(s)
- Timothy C Cairns
- Chair of Applied and Molecular Microbiology, Institute of Biotechnology, Technische Universität Berlin, Straße Des 17. Juni 135, 10623, Berlin, Germany.
| | - Tom de Kanter
- Chair of Applied and Molecular Microbiology, Institute of Biotechnology, Technische Universität Berlin, Straße Des 17. Juni 135, 10623, Berlin, Germany
| | - Xiaomei Z Zheng
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, People's Republic of China
- Key Laboratory of Systems Microbial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, People's Republic of China
- University of Chinese Academy of Sciences, Beijing, 100049, China
- College of Biotechnology, Tianjin University of Science & Technology, Tianjin, 300457, China
| | - Ping Zheng
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, People's Republic of China
- Key Laboratory of Systems Microbial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, People's Republic of China
- University of Chinese Academy of Sciences, Beijing, 100049, China
- College of Biotechnology, Tianjin University of Science & Technology, Tianjin, 300457, China
| | - Jibin Sun
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, People's Republic of China
- Key Laboratory of Systems Microbial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, People's Republic of China
- University of Chinese Academy of Sciences, Beijing, 100049, China
- College of Biotechnology, Tianjin University of Science & Technology, Tianjin, 300457, China
| | - Vera Meyer
- Chair of Applied and Molecular Microbiology, Institute of Biotechnology, Technische Universität Berlin, Straße Des 17. Juni 135, 10623, Berlin, Germany.
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Álvarez M, Núñez F, Delgado J, Andrade MJ, Rodrigues P. Proteomic evaluation of the effect of antifungal agents on aspergillus westerdijkiae ochratoxin A production in a dry-cured fermented sausage-based medium. Int J Food Microbiol 2022; 379:109858. [DOI: 10.1016/j.ijfoodmicro.2022.109858] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2022] [Revised: 07/12/2022] [Accepted: 07/26/2022] [Indexed: 10/16/2022]
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Dudek B, Warskulat AC, Vogel H, Wielsch N, Menezes RC, Hupfer Y, Paetz C, Gebauer-Jung S, Svatoš A, Schneider B. An Integrated-Omics/Chemistry Approach Unravels Enzymatic and Spontaneous Steps to Form Flavoalkaloidal Nudicaulin Pigments in Flowers of Papaver nudicaule L. Int J Mol Sci 2021; 22:ijms22084129. [PMID: 33923591 PMCID: PMC8073789 DOI: 10.3390/ijms22084129] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2021] [Revised: 03/26/2021] [Accepted: 04/13/2021] [Indexed: 11/16/2022] Open
Abstract
Flower colour is an important trait for plants to attract pollinators and ensure their reproductive success. Among yellow flower pigments, the nudicaulins in Papaver nudicaule L. (Iceland poppy) are unique due to their rarity and unparalleled flavoalkaloid structure. Nudicaulins are derived from pelargonidin glycoside and indole, products of the flavonoid and indole/tryptophan biosynthetic pathway, respectively. To gain insight into the molecular and chemical basis of nudicaulin biosynthesis, we combined transcriptome, differential gel electrophoresis (DIGE)-based proteome, and ultra-performance liquid chromatography-high resolution mass spectrometry (UPLC-HRMS)-based metabolome data of P. nudicaule petals with chemical investigations. We identified candidate genes and proteins for all biosynthetic steps as well as some key metabolites across five stages of petal development. Candidate genes of amino acid biosynthesis showed a relatively stable expression throughout petal development, whereas most candidate genes of flavonoid biosynthesis showed increasing expression during development followed by downregulation in the final stage. Notably, gene candidates of indole-3-glycerol-phosphate lyase (IGL), sharing characteristic sequence motifs with known plant IGL genes, were co-expressed with flavonoid biosynthesis genes, and are probably providing free indole. The fusion of indole with pelargonidin glycosides was retraced synthetically and promoted by high precursor concentrations, an excess of indole, and a specific glycosylation pattern of pelargonidin. Thus, nudicaulin biosynthesis combines the enzymatic steps of two different pathways with a spontaneous fusion of indole and pelargonidin glycoside under precisely tuned reaction conditions.
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Mannitol-1-phosphate dehydrogenase, MpdA, is required for mannitol production in vegetative cells and involved in hyphal branching, heat resistance of conidia and sexual development in Aspergillus nidulans. Curr Genet 2021; 67:613-630. [PMID: 33683401 DOI: 10.1007/s00294-021-01163-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2020] [Revised: 02/01/2021] [Accepted: 02/03/2021] [Indexed: 10/22/2022]
Abstract
Aspergillus nidulans produces cleistothecia as sexual reproductive organs in a process affected by genetic and external factors. To gain a deeper insight into A. nidulans sexual development, we performed comparative proteome analyses based on the wild type developmental periods. We identified sexual development-specific proteins with a more than twofold increase in production during hypoxia or the sexual period compared to the asexual period. Among the sexual development-specific proteins analyzed by gene-deletion experiments and functional assays, MpdA, a putative mannitol-1-phosphate 5-dehydrogenase, plays multiple roles in growth and differentiation of A. nidulans. The most distinct mpdA-deletion phenotype was ascosporogenesis failure. Genetic mpdA deletion resulted in small cleistothecia with no functional ascospores. Transcriptional analyses indicated that MpdA modulates the expression of key development- and meiosis-regulatory genes during sexual development. The mpdA deletion increased hyphal branching and decreased conidial heat resistance. Mannitol production in conidia showed no difference, whereas it was decreased in mycelia and sexual cultures. Addition of mannitol during vegetative growth recovered the defects in conidial heat resistance and ascospore genesis. Taken together, these results indicate that MpdA plays an important role in sexual development, hyphal branching, and conidial heat resistance in Aspergillus nidulans.
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Lim JY, Kang EH, Park YH, Kook JH, Park HM. Survival factor SvfA plays multiple roles in differentiation and is essential for completion of sexual development in Aspergillus nidulans. Sci Rep 2020; 10:5586. [PMID: 32221392 PMCID: PMC7101369 DOI: 10.1038/s41598-020-62455-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2019] [Accepted: 03/13/2020] [Indexed: 01/28/2023] Open
Abstract
The first member of the velvet family of proteins, VeA, regulates sexual development and secondary metabolism in the filamentous fungus Aspergillus nidulans. In our study, through comparative proteome analysis using wild type and veA-deletion strains, new putative regulators of sexual development were identified and functionally analyzed. Among these, SvfA, containing a yeast survival factor 1 domain, plays multiple roles in the growth and differentiation of A. nidulans. Deletion of the svfA gene resulted in increased sensitivity to oxidative and cold stress as in yeast. The svfA-deletion strain showed an increase in bi-polar germination and a decrease in radial growth rate. The deletion strain formed structurally abnormal conidiophores and thus produced lower amounts of conidiospores during asexual development. The svfA-deletion strain produced few Hülle cells and small cleistothecia with no ascospores, indicating the requirement of svfA for the completion of sexual development. Transcription and genetic analyses indicated that SvfA modulates the expression of key development regulatory genes. Western blot analysis revealed two forms of SvfA. The larger form showed sexual-specific and VeA-dependent production. Also, the deletion of svfA caused decreased ST (sterigmatocystin) production. We propose that SvfA is a novel central regulator of growth, differentiation and secondary metabolism in A. nidulans.
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Affiliation(s)
- Joo-Yeon Lim
- Department of Microbiology and Molecular Biology, College of Bioscience and Biotechnology, Chungnam National University, Daejeon, 34134, Korea
| | - Eun-Hye Kang
- Department of Microbiology and Molecular Biology, College of Bioscience and Biotechnology, Chungnam National University, Daejeon, 34134, Korea
| | - Yun-Hee Park
- Department of Microbiology and Molecular Biology, College of Bioscience and Biotechnology, Chungnam National University, Daejeon, 34134, Korea
| | - Jun-Ho Kook
- Department of Microbiology and Molecular Biology, College of Bioscience and Biotechnology, Chungnam National University, Daejeon, 34134, Korea
| | - Hee-Moon Park
- Department of Microbiology and Molecular Biology, College of Bioscience and Biotechnology, Chungnam National University, Daejeon, 34134, Korea.
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8
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Abstract
Aspergilli produce conidia for reproduction or to survive hostile conditions, and they are highly effective in the distribution of conidia through the environment. In immunocompromised individuals, inhaled conidia can germinate inside the respiratory tract, which may result in invasive pulmonary aspergillosis. The management of invasive aspergillosis has become more complex, with new risk groups being identified and the emergence of antifungal resistance. Patient survival is threatened by these developments, stressing the need for alternative therapeutic strategies. As germination is crucial for infection, prevention of this process might be a feasible approach. A broader understanding of conidial germination is important to identify novel antigermination targets. In this review, we describe conidial resistance against various stresses, transition from dormant conidia to hyphal growth, the underlying molecular mechanisms involved in germination of the most common Aspergillus species, and promising antigermination targets. Germination of Aspergillus is characterized by three morphotypes: dormancy, isotropic growth, and polarized growth. Intra- and extracellular proteins play an important role in the protection against unfavorable environmental conditions. Isotropically expanding conidia remodel the cell wall, and biosynthetic machineries are needed for cellular growth. These biosynthetic machineries are also important during polarized growth, together with tip formation and the cell cycle machinery. Genes involved in isotropic and polarized growth could be effective antigermination targets. Transcriptomic and proteomic studies on specific Aspergillus morphotypes will improve our understanding of the germination process and allow discovery of novel antigermination targets and biomarkers for early diagnosis and therapy.
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N'Guyen GQ, Raulo R, Marchi M, Agustí-Brisach C, Iacomi B, Pelletier S, Renou JP, Bataillé-Simoneau N, Campion C, Bastide F, Hamon B, Mouchès C, Porcheron B, Lemoine R, Kwasiborski A, Simoneau P, Guillemette T. Responses to Hydric Stress in the Seed-Borne Necrotrophic Fungus Alternaria brassicicola. Front Microbiol 2019; 10:1969. [PMID: 31543870 PMCID: PMC6730492 DOI: 10.3389/fmicb.2019.01969] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2018] [Accepted: 08/09/2019] [Indexed: 02/06/2023] Open
Abstract
Alternaria brassicicola is a necrotrophic fungus causing black spot disease and is an economically important seed-borne pathogen of cultivated brassicas. Seed transmission is a crucial component of its parasitic cycle as it promotes long-term survival and dispersal. Recent studies, conducted with the Arabidopsis thaliana/A. brassicicola pathosystem, showed that the level of susceptibility of the fungus to water stress strongly influenced its seed transmission ability. In this study, we gained further insights into the mechanisms involved in the seed infection process by analyzing the transcriptomic and metabolomic responses of germinated spores of A. brassicicola exposed to water stress. Then, the repertoire of putative hydrophilins, a group of proteins that are assumed to be involved in cellular dehydration tolerance, was established in A. brassicicola based on the expression data and additional structural and biochemical criteria. Phenotyping of single deletion mutants deficient for fungal hydrophilin-like proteins showed that they were affected in their transmission to A. thaliana seeds, although their aggressiveness on host vegetative tissues remained intact.
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Affiliation(s)
- Guillaume Quang N'Guyen
- Institut de Recherche en Horticulture et Semences - UMR 1345, INRA, Université d'Angers, Agrocampus-Ouest, SFR 4207 QUASAV, Angers, France
| | - Roxane Raulo
- Université de Lille, INRA, ISA, Université d'Artois, Université du Littoral Côte d'Opale, EA 7394 - ICV - Institut Charles Viollette, Lille, France
| | - Muriel Marchi
- Institut de Recherche en Horticulture et Semences - UMR 1345, INRA, Université d'Angers, Agrocampus-Ouest, SFR 4207 QUASAV, Angers, France
| | | | - Beatrice Iacomi
- Department of Plant Sciences, University of Agronomic Sciences and Veterinary Medicine of Bucharest, Bucharest, Romania
| | - Sandra Pelletier
- Institut de Recherche en Horticulture et Semences - UMR 1345, INRA, Université d'Angers, Agrocampus-Ouest, SFR 4207 QUASAV, Angers, France
| | - Jean-Pierre Renou
- Institut de Recherche en Horticulture et Semences - UMR 1345, INRA, Université d'Angers, Agrocampus-Ouest, SFR 4207 QUASAV, Angers, France
| | - Nelly Bataillé-Simoneau
- Institut de Recherche en Horticulture et Semences - UMR 1345, INRA, Université d'Angers, Agrocampus-Ouest, SFR 4207 QUASAV, Angers, France
| | - Claire Campion
- Institut de Recherche en Horticulture et Semences - UMR 1345, INRA, Université d'Angers, Agrocampus-Ouest, SFR 4207 QUASAV, Angers, France
| | - Franck Bastide
- Institut de Recherche en Horticulture et Semences - UMR 1345, INRA, Université d'Angers, Agrocampus-Ouest, SFR 4207 QUASAV, Angers, France
| | - Bruno Hamon
- Institut de Recherche en Horticulture et Semences - UMR 1345, INRA, Université d'Angers, Agrocampus-Ouest, SFR 4207 QUASAV, Angers, France
| | - Chloé Mouchès
- Institut de Recherche en Horticulture et Semences - UMR 1345, INRA, Université d'Angers, Agrocampus-Ouest, SFR 4207 QUASAV, Angers, France
| | - Benoit Porcheron
- Equipe "Sucres & Echanges Végétaux-Environnement," UMR CNRS 7267 EBI Ecologie et Biologie des Interactions, Université de Poitiers, Poitiers, France
| | - Remi Lemoine
- Equipe "Sucres & Echanges Végétaux-Environnement," UMR CNRS 7267 EBI Ecologie et Biologie des Interactions, Université de Poitiers, Poitiers, France
| | - Anthony Kwasiborski
- Institut de Recherche en Horticulture et Semences - UMR 1345, INRA, Université d'Angers, Agrocampus-Ouest, SFR 4207 QUASAV, Angers, France
| | - Philippe Simoneau
- Institut de Recherche en Horticulture et Semences - UMR 1345, INRA, Université d'Angers, Agrocampus-Ouest, SFR 4207 QUASAV, Angers, France
| | - Thomas Guillemette
- Institut de Recherche en Horticulture et Semences - UMR 1345, INRA, Université d'Angers, Agrocampus-Ouest, SFR 4207 QUASAV, Angers, France
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Motoyama T, Nogawa T, Hayashi T, Hirota H, Osada H. Induction of Nectriapyrone Biosynthesis in the Rice Blast Fungus Pyricularia oryzae
by Disturbance of the Two-Component Signal Transduction System. Chembiochem 2019; 20:693-700. [DOI: 10.1002/cbic.201800620] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2018] [Indexed: 12/12/2022]
Affiliation(s)
| | | | | | - Hiroshi Hirota
- CSRS; RIKEN; 2-1 Hirosawa Wako-shi Saitama 351-0198 Japan
| | - Hiroyuki Osada
- CSRS; RIKEN; 2-1 Hirosawa Wako-shi Saitama 351-0198 Japan
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11
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Macheleidt J, Mattern DJ, Fischer J, Netzker T, Weber J, Schroeckh V, Valiante V, Brakhage AA. Regulation and Role of Fungal Secondary Metabolites. Annu Rev Genet 2016; 50:371-392. [DOI: 10.1146/annurev-genet-120215-035203] [Citation(s) in RCA: 219] [Impact Index Per Article: 27.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Juliane Macheleidt
- Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology, Hans Knöll Institute (HKI), 07745 Jena, Germany; , , , , , ,
| | - Derek J. Mattern
- Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology, Hans Knöll Institute (HKI), 07745 Jena, Germany; , , , , , ,
- Institute for Microbiology, Friedrich Schiller University Jena, 07737 Jena, Germany
| | - Juliane Fischer
- Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology, Hans Knöll Institute (HKI), 07745 Jena, Germany; , , , , , ,
- Institute for Microbiology, Friedrich Schiller University Jena, 07737 Jena, Germany
| | - Tina Netzker
- Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology, Hans Knöll Institute (HKI), 07745 Jena, Germany; , , , , , ,
- Institute for Microbiology, Friedrich Schiller University Jena, 07737 Jena, Germany
| | - Jakob Weber
- Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology, Hans Knöll Institute (HKI), 07745 Jena, Germany; , , , , , ,
- Institute for Microbiology, Friedrich Schiller University Jena, 07737 Jena, Germany
| | - Volker Schroeckh
- Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology, Hans Knöll Institute (HKI), 07745 Jena, Germany; , , , , , ,
| | - Vito Valiante
- Research Group Biobricks of Microbial Natural Product Syntheses, Leibniz Institute for Natural Product Research and Infection Biology (HKI), 07745 Jena, Germany;
| | - Axel A. Brakhage
- Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology, Hans Knöll Institute (HKI), 07745 Jena, Germany; , , , , , ,
- Institute for Microbiology, Friedrich Schiller University Jena, 07737 Jena, Germany
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Characterization of the product of a nonribosomal peptide synthetase-like (NRPS-like) gene using the doxycycline dependent Tet-on system in Aspergillus terreus. Fungal Genet Biol 2016; 89:84-88. [DOI: 10.1016/j.fgb.2016.01.014] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2015] [Revised: 01/07/2016] [Accepted: 01/26/2016] [Indexed: 11/18/2022]
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13
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Wanka F, Cairns T, Boecker S, Berens C, Happel A, Zheng X, Sun J, Krappmann S, Meyer V. Tet-on, or Tet-off, that is the question: Advanced conditional gene expression in Aspergillus. Fungal Genet Biol 2016; 89:72-83. [DOI: 10.1016/j.fgb.2015.11.003] [Citation(s) in RCA: 61] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2015] [Revised: 10/28/2015] [Accepted: 11/03/2015] [Indexed: 12/20/2022]
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14
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Hu J, Wang F, Ma A, Zhuang G, Liu Y, Lu J, Guo C, Liu C. Farnesol stimulates laccase production in
Trametes versicolor. Eng Life Sci 2016. [DOI: 10.1002/elsc.201500082] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
Affiliation(s)
- Jianhua Hu
- National Key Laboratory of Biochemical Engineering Institute of Process Engineering, Chinese Academy of Sciences Beijing P. R. China
- University of Chinese Academy of Sciences Beijing P. R. China
| | - Feng Wang
- National Key Laboratory of Biochemical Engineering Institute of Process Engineering, Chinese Academy of Sciences Beijing P. R. China
| | - Anzhou Ma
- Research Center for Eco‐Environmental Sciences Chinese Academy of Sciences Beijing P. R. China
| | - Guoqiang Zhuang
- Research Center for Eco‐Environmental Sciences Chinese Academy of Sciences Beijing P. R. China
| | - Ying Liu
- National Key Laboratory of Biochemical Engineering Institute of Process Engineering, Chinese Academy of Sciences Beijing P. R. China
- Jiangsu Jiangu Chemical Co. Ltd Suqian Jiangsu Province P. R. China
| | - Jingsong Lu
- Jiangsu Jiangu Chemical Co. Ltd Suqian Jiangsu Province P. R. China
| | - Chen Guo
- National Key Laboratory of Biochemical Engineering Institute of Process Engineering, Chinese Academy of Sciences Beijing P. R. China
| | - Chunzhao Liu
- National Key Laboratory of Biochemical Engineering Institute of Process Engineering, Chinese Academy of Sciences Beijing P. R. China
- Jiangsu Jiangu Chemical Co. Ltd Suqian Jiangsu Province P. R. China
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15
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Wongsuk T, Pumeesat P, Luplertlop N. Fungal quorum sensing molecules: Role in fungal morphogenesis and pathogenicity. J Basic Microbiol 2016; 56:440-7. [PMID: 26972663 DOI: 10.1002/jobm.201500759] [Citation(s) in RCA: 101] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2015] [Accepted: 02/19/2016] [Indexed: 01/19/2023]
Abstract
When microorganisms live together in high numbers, they need to communicate with each other. To achieve cell-cell communication, microorganisms secrete molecules called quorum-sensing molecules (QSMs) that control their biological activities and behaviors. Fungi secrete QSMs such as farnesol, tyrosol, phenylethanol, and tryptophol. The role of QSMs in fungi has been widely studied in both yeasts and filamentous fungi, for example in Candida albicans, C. dubliniensis, Aspergillus niger, A. nidulans, and Fusarium graminearum. QSMs impact fungal morphogenesis (yeast-to-hypha formation) and also play a role in the germination of macroconidia. QSMs cause fungal cells to initiate programmed cell death, or apoptosis, and play a role in fungal pathogenicity. Several types of QSMs are produced during stages of biofilm development to control cell population or morphology in biofilm communities. This review article emphasizes the role of fungal QSMs, especially in fungal morphogenesis, biofilm formation, and pathogenicity. Information about QSMs may lead to improved measures for controlling fungal infection.
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Affiliation(s)
- Thanwa Wongsuk
- Department of Clinical Pathology, Faculty of Medicine, Vajira Hospital, Navamindradhiraj University, Bangkok, Thailand.,Department of Microbiology and Immunology, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand
| | - Potjaman Pumeesat
- Department of Medical Technology, Faculty of Science and Technology, Bansomdejchaopraya Rajabhat University, Bangkok, Thailand.,Department of Microbiology and Immunology, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand
| | - Natthanej Luplertlop
- Department of Microbiology and Immunology, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand.,Center for Emerging and Neglected Infectious Diseases, Mahidol University, Salaya Campus, Nakorn Pathom, Thailand
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16
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Abstract
We are presenting a quantitative proteomics tally of the most commonly expressed conserved fungal proteins of the cytosol, the cell wall, and the secretome. It was our goal to identify fungi-typical proteins that do not share significant homology with human proteins. Such fungal proteins are of interest to the development of vaccines or drug targets. Protein samples were derived from 13 fungal species, cultured in rich or in minimal media; these included clinical isolates of Aspergillus, Candida, Mucor, Cryptococcus, and Coccidioides species. Proteomes were analyzed by quantitative MSE (Mass Spectrometry-Elevated Collision Energy). Several thousand proteins were identified and quantified in total across all fractions and culture conditions. The 42 most abundant proteins identified in fungal cell walls or supernatants shared no to very little homology with human proteins. In contrast, all but five of the 50 most abundant cytosolic proteins had human homologs with sequence identity averaging 59%. Proteomic comparisons of the secreted or surface localized fungal proteins highlighted conserved homologs of the Aspergillus fumigatus proteins 1,3-β-glucanosyltransferases (Bgt1, Gel1-4), Crf1, Ecm33, EglC, and others. The fact that Crf1 and Gel1 were previously shown to be promising vaccine candidates, underlines the value of the proteomics data presented here.
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17
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Karácsony Z, Gácser A, Vágvölgyi C, Hamari Z. Further characterization of the role of the mitochondrial high-mobility group box protein in the intracellular redox environment of Aspergillus nidulans. MICROBIOLOGY-SGM 2015; 161:1897-1908. [PMID: 26297166 DOI: 10.1099/mic.0.000139] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
HmbB, a predominantly mitochondrial high-mobility group box (HMGB) protein, of Aspergillus nidulans affects diverse biological activities, such as sterigmatocystin production, the maintenance of mitochondrial DNA copy number, germination of asexual and sexual spores, and protection against oxidative stress agents. We hypothesized that the latter correlates with an unbalanced intracellular redox state, in which case, a not yet fully characterized physiological function could be attributed to this mitochondrial HMGB protein. Here, we studied the intracellular redox environment and oxidative stress tolerance in hmbB+ and hmbBΔ strains under normal and oxidative stress conditions by measuring glutathione redox couple, intracellular reactive oxygen species (ROS) content and ROS-protecting enzyme activities. Our results revealed that the intracellular redox environment is different in hmbBΔ conidia and mycelia from that of hmbB+, and shed light on the seemingly contradictory difference in the tolerance of hmbBΔ mycelia to diamide and menadione oxidative stressors.
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Affiliation(s)
- Zoltán Karácsony
- Faculty of Sciences and Informatics, University of Szeged, 6726 Szeged, Közép fasor 52, Hungary
| | - Attila Gácser
- Faculty of Sciences and Informatics, University of Szeged, 6726 Szeged, Közép fasor 52, Hungary
| | - Csaba Vágvölgyi
- Faculty of Sciences and Informatics, University of Szeged, 6726 Szeged, Közép fasor 52, Hungary
| | - Zsuzsanna Hamari
- Faculty of Sciences and Informatics, University of Szeged, 6726 Szeged, Közép fasor 52, Hungary
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18
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The SrkA Kinase Is Part of the SakA Mitogen-Activated Protein Kinase Interactome and Regulates Stress Responses and Development in Aspergillus nidulans. EUKARYOTIC CELL 2015; 14:495-510. [PMID: 25820520 DOI: 10.1128/ec.00277-14] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2014] [Accepted: 03/20/2015] [Indexed: 02/02/2023]
Abstract
Fungi and many other eukaryotes use specialized mitogen-activated protein kinases (MAPK) of the Hog1/p38 family to transduce environmental stress signals. In Aspergillus nidulans, the MAPK SakA and the transcription factor AtfA are components of a central multiple stress-signaling pathway that also regulates development. Here we characterize SrkA, a putative MAPK-activated protein kinase, as a novel component of this pathway. ΔsrkA and ΔsakA mutants share a derepressed sexual development phenotype. However, ΔsrkA mutants are not sensitive to oxidative stress, and in fact, srkA inactivation partially suppresses the sensitivity of ΔsakA mutant conidia to H2O2, tert-butyl-hydroperoxide (t-BOOH), and menadione. In the absence of stress, SrkA shows physical interaction with nonphosphorylated SakA in the cytosol. We show that H2O2 induces a drastic change in mitochondrial morphology consistent with a fission process and the relocalization of SrkA to nuclei and mitochondria, depending on the presence of SakA. SakA-SrkA nuclear interaction is also observed during normal asexual development in dormant spores. Using SakA and SrkA S-tag pulldown and purification studies coupled to mass spectrometry, we found that SakA interacts with SrkA, the stress MAPK MpkC, the PPT1-type phosphatase AN6892, and other proteins involved in cell cycle regulation, DNA damage response, mRNA stability and protein synthesis, mitochondrial function, and other stress-related responses. We propose that oxidative stress induces DNA damage and mitochondrial fission and that SakA and SrkA mediate cell cycle arrest and regulate mitochondrial function during stress. Our results provide new insights into the mechanisms by which SakA and SrkA regulate the remodelling of cell physiology during oxidative stress and development.
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19
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Engineering of Aspergillus niger for the production of secondary metabolites. Fungal Biol Biotechnol 2014; 1:4. [PMID: 28955446 PMCID: PMC5598268 DOI: 10.1186/s40694-014-0004-9] [Citation(s) in RCA: 59] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2014] [Accepted: 08/13/2014] [Indexed: 01/17/2023] Open
Abstract
Background Filamentous fungi can each produce dozens of secondary metabolites which are attractive as therapeutics, drugs, antimicrobials, flavour compounds and other high-value chemicals. Furthermore, they can be used as an expression system for eukaryotic proteins. Application of most fungal secondary metabolites is, however, so far hampered by the lack of suitable fermentation protocols for the producing strain and/or by low product titers. To overcome these limitations, we report here the engineering of the industrial fungus Aspergillus niger to produce high titers (up to 4,500 mg • l−1) of secondary metabolites belonging to the class of nonribosomal peptides. Results For a proof-of-concept study, we heterologously expressed the 351 kDa nonribosomal peptide synthetase ESYN from Fusarium oxysporum in A. niger. ESYN catalyzes the formation of cyclic depsipeptides of the enniatin family, which exhibit antimicrobial, antiviral and anticancer activities. The encoding gene esyn1 was put under control of a tunable bacterial-fungal hybrid promoter (Tet-on) which was switched on during early-exponential growth phase of A. niger cultures. The enniatins were isolated and purified by means of reverse phase chromatography and their identity and purity proven by tandem MS, NMR spectroscopy and X-ray crystallography. The initial yields of 1 mg • l−1 of enniatin were increased about 950 fold by optimizing feeding conditions and the morphology of A. niger in liquid shake flask cultures. Further yield optimization (about 4.5 fold) was accomplished by cultivating A. niger in 5 l fed batch fermentations. Finally, an autonomous A. niger expression host was established, which was independent from feeding with the enniatin precursor d-2-hydroxyvaleric acid d-Hiv. This was achieved by constitutively expressing a fungal d-Hiv dehydrogenase in the esyn1-expressing A. niger strain, which used the intracellular α-ketovaleric acid pool to generate d-Hiv. Conclusions This is the first report demonstrating that A. niger is a potent and promising expression host for nonribosomal peptides with titers high enough to become industrially attractive. Application of the Tet-on system in A. niger allows precise control on the timing of product formation, thereby ensuring high yields and purity of the peptides produced. Electronic supplementary material The online version of this article (doi:10.1186/s40694-014-0004-9) contains supplementary material, which is available to authorized users.
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20
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Proteomic profiling of Botrytis cinerea conidial germination. Arch Microbiol 2014; 197:117-33. [DOI: 10.1007/s00203-014-1029-4] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2014] [Revised: 07/21/2014] [Accepted: 08/12/2014] [Indexed: 12/20/2022]
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21
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Budak SO, Zhou M, Brouwer C, Wiebenga A, Benoit I, Di Falco M, Tsang A, de Vries RP. A genomic survey of proteases in Aspergilli. BMC Genomics 2014; 15:523. [PMID: 24965873 PMCID: PMC4102723 DOI: 10.1186/1471-2164-15-523] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2014] [Accepted: 06/18/2014] [Indexed: 01/13/2023] Open
Abstract
BACKGROUND Proteases can hydrolyze peptides in aqueous environments. This property has made proteases the most important industrial enzymes by taking up about 60% of the total enzyme market. Microorganisms are the main sources for industrial protease production due to their high yield and a wide range of biochemical properties. Several Aspergilli have the ability to produce a variety of proteases, but no comprehensive comparative study has been carried out on protease productivity in this genus so far. RESULTS We have performed a combined analysis of comparative genomics, proteomics and enzymology tests on seven Aspergillus species grown on wheat bran and sugar beet pulp. Putative proteases were identified by homology search and Pfam domains. These genes were then clusters based on orthology and extracellular proteases were identified by protein subcellular localization prediction. Proteomics was used to identify the secreted enzymes in the cultures, while protease essays with and without inhibitors were performed to determine the overall protease activity per protease class. All this data was then integrated to compare the protease productivities in Aspergilli. CONCLUSIONS Genomes of Aspergillus species contain a similar proportion of protease encoding genes. According to comparative genomics, proteomics and enzymatic experiments serine proteases make up the largest group in the protease spectrum across the species. In general wheat bran gives higher induction of proteases than sugar beet pulp. Interesting differences of protease activity, extracellular enzyme spectrum composition, protein occurrence and abundance were identified for species. By combining in silico and wet-lab experiments, we present the intriguing variety of protease productivity in Aspergilli.
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Affiliation(s)
- Sebnem Ozturkoglu Budak
- />CBS-KNAW Fungal Biodiversity Center, Uppsalalaan 8, Utrecht, 3584 CT The Netherlands
- />Faculty of Agriculture, Department of Dairy Technology, University of Ankara, Ankara, Turkey
- />Fungal Molecular Physiology, Utrecht University, Utrecht, The Netherlands
| | - Miaomiao Zhou
- />CBS-KNAW Fungal Biodiversity Center, Uppsalalaan 8, Utrecht, 3584 CT The Netherlands
- />Fungal Molecular Physiology, Utrecht University, Utrecht, The Netherlands
| | - Carlo Brouwer
- />CBS-KNAW Fungal Biodiversity Center, Uppsalalaan 8, Utrecht, 3584 CT The Netherlands
| | - Ad Wiebenga
- />CBS-KNAW Fungal Biodiversity Center, Uppsalalaan 8, Utrecht, 3584 CT The Netherlands
- />Fungal Molecular Physiology, Utrecht University, Utrecht, The Netherlands
| | - Isabelle Benoit
- />CBS-KNAW Fungal Biodiversity Center, Uppsalalaan 8, Utrecht, 3584 CT The Netherlands
- />Fungal Molecular Physiology, Utrecht University, Utrecht, The Netherlands
| | - Marcos Di Falco
- />Centre for Structural and Functional Genomics, Concordia University, 7141 Sherbrooke Street West, Montreal, QC H4B 1R6 Canada
| | - Adrian Tsang
- />Centre for Structural and Functional Genomics, Concordia University, 7141 Sherbrooke Street West, Montreal, QC H4B 1R6 Canada
| | - Ronald P de Vries
- />CBS-KNAW Fungal Biodiversity Center, Uppsalalaan 8, Utrecht, 3584 CT The Netherlands
- />Fungal Molecular Physiology, Utrecht University, Utrecht, The Netherlands
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22
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Govindaraghavan M, McGuire Anglin SL, Shen KF, Shukla N, De Souza CP, Osmani SA. Identification of interphase functions for the NIMA kinase involving microtubules and the ESCRT pathway. PLoS Genet 2014; 10:e1004248. [PMID: 24675878 PMCID: PMC3967960 DOI: 10.1371/journal.pgen.1004248] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2013] [Accepted: 02/03/2014] [Indexed: 12/11/2022] Open
Abstract
The Never in Mitosis A (NIMA) kinase (the founding member of the Nek family of kinases) has been considered a mitotic specific kinase with nuclear restricted roles in the model fungus Aspergillus nidulans. By extending to A. nidulans the results of a synthetic lethal screen performed in Saccharomyces cerevisiae using the NIMA ortholog KIN3, we identified a conserved genetic interaction between nimA and genes encoding proteins of the Endosomal Sorting Complex Required for Transport (ESCRT) pathway. Absence of ESCRT pathway functions in combination with partial NIMA function causes enhanced cell growth defects, including an inability to maintain a single polarized dominant cell tip. These genetic insights suggest NIMA potentially has interphase functions in addition to its established mitotic functions at nuclei. We therefore generated endogenously GFP-tagged NIMA (NIMA-GFP) which was fully functional to follow its interphase locations using live cell spinning disc 4D confocal microscopy. During interphase some NIMA-GFP locates to the tips of rapidly growing cells and, when expressed ectopically, also locates to the tips of cytoplasmic microtubules, suggestive of non-nuclear interphase functions. In support of this, perturbation of NIMA function either by ectopic overexpression or through partial inactivation results in marked cell tip growth defects with excess NIMA-GFP promoting multiple growing cell tips. Ectopic NIMA-GFP was found to locate to the plus ends of microtubules in an EB1 dependent manner, while impairing NIMA function altered the dynamic localization of EB1 and the cytoplasmic microtubule network. Together, our genetic and cell biological analyses reveal novel non-nuclear interphase functions for NIMA involving microtubules and the ESCRT pathway for normal polarized fungal cell tip growth. These insights extend the roles of NIMA both spatially and temporally and indicate that this conserved protein kinase could help integrate cell cycle progression with polarized cell growth.
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Affiliation(s)
- Meera Govindaraghavan
- Molecular, Cellular and Developmental Biology Program, The Ohio State University, Columbus, Ohio, United States of America
- Department of Molecular Genetics, The Ohio State University, Columbus, Ohio, United States of America
| | | | - Kuo-Fang Shen
- Molecular, Cellular and Developmental Biology Program, The Ohio State University, Columbus, Ohio, United States of America
- Department of Molecular Genetics, The Ohio State University, Columbus, Ohio, United States of America
| | - Nandini Shukla
- Molecular, Cellular and Developmental Biology Program, The Ohio State University, Columbus, Ohio, United States of America
- Ohio State Biochemistry Program, The Ohio State University, Columbus, Ohio, United States of America
| | - Colin P. De Souza
- Department of Molecular Genetics, The Ohio State University, Columbus, Ohio, United States of America
| | - Stephen A. Osmani
- Molecular, Cellular and Developmental Biology Program, The Ohio State University, Columbus, Ohio, United States of America
- Department of Molecular Genetics, The Ohio State University, Columbus, Ohio, United States of America
- Ohio State Biochemistry Program, The Ohio State University, Columbus, Ohio, United States of America
- * E-mail:
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Martins I, Hartmann DO, Alves PC, Planchon S, Renaut J, Leitão MC, Rebelo LP, Silva Pereira C. Proteomic alterations induced by ionic liquids in Aspergillus nidulans and Neurospora crassa. J Proteomics 2013; 94:262-78. [DOI: 10.1016/j.jprot.2013.09.015] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2013] [Revised: 09/13/2013] [Accepted: 09/27/2013] [Indexed: 02/03/2023]
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Pochon S, Simoneau P, Pigné S, Balidas S, Bataillé-Simoneau N, Campion C, Jaspard E, Calmes B, Hamon B, Berruyer R, Juchaux M, Guillemette T. Dehydrin-like proteins in the necrotrophic fungus Alternaria brassicicola have a role in plant pathogenesis and stress response. PLoS One 2013; 8:e75143. [PMID: 24098369 PMCID: PMC3788798 DOI: 10.1371/journal.pone.0075143] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2013] [Accepted: 08/09/2013] [Indexed: 11/18/2022] Open
Abstract
In this study, the roles of fungal dehydrin-like proteins in pathogenicity and protection against environmental stresses were investigated in the necrotrophic seed-borne fungus Alternaria brassicicola. Three proteins (called AbDhn1, AbDhn2 and AbDhn3), harbouring the asparagine-proline-arginine (DPR) signature pattern and sharing the characteristic features of fungal dehydrin-like proteins, were identified in the A. brassicicola genome. The expression of these genes was induced in response to various stresses and found to be regulated by the AbHog1 mitogen-activated protein kinase (MAPK) pathway. A knock-out approach showed that dehydrin-like proteins have an impact mainly on oxidative stress tolerance and on conidial survival upon exposure to high and freezing temperatures. The subcellular localization revealed that AbDhn1 and AbDhn2 were associated with peroxisomes, which is consistent with a possible perturbation of protective mechanisms to counteract oxidative stress and maintain the redox balance in AbDhn mutants. Finally, we show that the double deletion mutant ΔΔabdhn1-abdhn2 was highly compromised in its pathogenicity. By comparison to the wild-type, this mutant exhibited lower aggressiveness on B. oleracea leaves and a reduced capacity to be transmitted to Arabidopsis seeds via siliques. The double mutant was also affected with respect to conidiation, another crucial step in the epidemiology of the disease.
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Affiliation(s)
- Stéphanie Pochon
- Université d’Angers, UMR 1345 IRHS, SFR QUASAV, Angers, France
- INRA, UMR 1345 IRHS, Angers, France
- Agrocampus-Ouest, UMR 1345 IRHS, Angers, France
| | - Philippe Simoneau
- Université d’Angers, UMR 1345 IRHS, SFR QUASAV, Angers, France
- INRA, UMR 1345 IRHS, Angers, France
- Agrocampus-Ouest, UMR 1345 IRHS, Angers, France
| | - Sandrine Pigné
- Université d’Angers, UMR 1345 IRHS, SFR QUASAV, Angers, France
- INRA, UMR 1345 IRHS, Angers, France
- Agrocampus-Ouest, UMR 1345 IRHS, Angers, France
| | - Samuel Balidas
- Université d’Angers, UMR 1345 IRHS, SFR QUASAV, Angers, France
- INRA, UMR 1345 IRHS, Angers, France
- Agrocampus-Ouest, UMR 1345 IRHS, Angers, France
| | - Nelly Bataillé-Simoneau
- Université d’Angers, UMR 1345 IRHS, SFR QUASAV, Angers, France
- INRA, UMR 1345 IRHS, Angers, France
- Agrocampus-Ouest, UMR 1345 IRHS, Angers, France
| | - Claire Campion
- Université d’Angers, UMR 1345 IRHS, SFR QUASAV, Angers, France
- INRA, UMR 1345 IRHS, Angers, France
- Agrocampus-Ouest, UMR 1345 IRHS, Angers, France
| | - Emmanuel Jaspard
- Université d’Angers, UMR 1345 IRHS, SFR QUASAV, Angers, France
- INRA, UMR 1345 IRHS, Angers, France
- Agrocampus-Ouest, UMR 1345 IRHS, Angers, France
| | - Benoît Calmes
- Université d’Angers, UMR 1345 IRHS, SFR QUASAV, Angers, France
- INRA, UMR 1345 IRHS, Angers, France
- Agrocampus-Ouest, UMR 1345 IRHS, Angers, France
| | - Bruno Hamon
- Université d’Angers, UMR 1345 IRHS, SFR QUASAV, Angers, France
- INRA, UMR 1345 IRHS, Angers, France
- Agrocampus-Ouest, UMR 1345 IRHS, Angers, France
| | - Romain Berruyer
- Université d’Angers, UMR 1345 IRHS, SFR QUASAV, Angers, France
- INRA, UMR 1345 IRHS, Angers, France
- Agrocampus-Ouest, UMR 1345 IRHS, Angers, France
| | | | - Thomas Guillemette
- Université d’Angers, UMR 1345 IRHS, SFR QUASAV, Angers, France
- INRA, UMR 1345 IRHS, Angers, France
- Agrocampus-Ouest, UMR 1345 IRHS, Angers, France
- * E-mail:
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25
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Knuf C, Nielsen J. Aspergilli: Systems biology and industrial applications. Biotechnol J 2012; 7:1147-55. [DOI: 10.1002/biot.201200169] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2012] [Revised: 06/25/2012] [Accepted: 07/10/2012] [Indexed: 12/12/2022]
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