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Godoy MS, Verdú I, de Miguel SR, Jiménez JD, Prieto MA. Exploring Rhodospirillum rubrum response to high doses of carbon monoxide under light and dark conditions. Appl Microbiol Biotechnol 2024; 108:258. [PMID: 38466440 DOI: 10.1007/s00253-024-13079-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2023] [Revised: 01/14/2024] [Accepted: 02/16/2024] [Indexed: 03/13/2024]
Abstract
Environmental concerns about residues and the traditional disposal methods are driving the search for more environmentally conscious processes, such as pyrolysis and gasification. Their main final product is synthesis gas (syngas) composed of CO, CO2, H2, and methane. Syngas can be converted into various products using CO-tolerant microorganisms. Among them, Rhodospirillum rubrum is highlighted for its biotechnological potential. However, the extent to which high doses of CO affect its physiology is still opaque. For this reason, we have studied R. rubrum behavior under high levels of this gas (up to 2.5 bar), revealing a profound dependence on the presence or absence of light. In darkness, the key variable affected was the lag phase, where the highest levels of CO retarded growth to more than 20 days. Under light, R. rubrum ability to convert CO into CO2 and H2 depended on the presence of an additional carbon source, such as acetate. In those conditions where CO was completely exhausted, CO2 fixation was unblocked, leading to a diauxic growth. To enhance R. rubrum tolerance to CO in darkness, a UV-accelerated adaptive laboratory evolution (UVa-ALE) trial was conducted to isolate clones with shorter lag phases, resulting in the isolation of clones 1.4-2B and 1.7-2A. The adaptation of 1.4-2B was mainly based on mutated enzymes with a metabolic function, while 1.7-3A was mostly affected at regulatory genes, including the anti-repressor PpaA/AerR. Despite these mutations having slight effects on biomass and pigment levels, they successfully provoked a significant reduction in the lag phase (-50%). KEYPOINTS: • CO affects principally R. rubrum lag phase (darkness) and growth rate (light) • CO is converted to CO2/H2 during acetate uptake and inhibits CO2 fixation (light) • UVa-ALE clones showed a 50% reduction in the lag phase (darkness).
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Affiliation(s)
- Manuel S Godoy
- Polymer Biotechnology Lab, Biological Research Centre Margarita Salas, Spanish National Research Council (CIB-CSIC), Madrid, Spain.
- Interdisciplinary Platform for Sustainable Plastics Towards a Circular Economy-CSIC (SusPlast-CSIC), Madrid, Spain.
| | - Irene Verdú
- Polymer Biotechnology Lab, Biological Research Centre Margarita Salas, Spanish National Research Council (CIB-CSIC), Madrid, Spain
- Present address: Drexel University, Philadelphia, Pennsylvania, USA
| | - Santiago R de Miguel
- Polymer Biotechnology Lab, Biological Research Centre Margarita Salas, Spanish National Research Council (CIB-CSIC), Madrid, Spain
- Interdisciplinary Platform for Sustainable Plastics Towards a Circular Economy-CSIC (SusPlast-CSIC), Madrid, Spain
| | - José D Jiménez
- Polymer Biotechnology Lab, Biological Research Centre Margarita Salas, Spanish National Research Council (CIB-CSIC), Madrid, Spain
- Interdisciplinary Platform for Sustainable Plastics Towards a Circular Economy-CSIC (SusPlast-CSIC), Madrid, Spain
| | - M Auxiliadora Prieto
- Polymer Biotechnology Lab, Biological Research Centre Margarita Salas, Spanish National Research Council (CIB-CSIC), Madrid, Spain.
- Interdisciplinary Platform for Sustainable Plastics Towards a Circular Economy-CSIC (SusPlast-CSIC), Madrid, Spain.
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Torres A, Collin-Faure V, Diemer H, Moriscot C, Fenel D, Gallet B, Cianférani S, Sergent JA, Rabilloud T. Repeated Exposure of Macrophages to Synthetic Amorphous Silica Induces Adaptive Proteome Changes and a Moderate Cell Activation. NANOMATERIALS 2022; 12:nano12091424. [PMID: 35564134 PMCID: PMC9105884 DOI: 10.3390/nano12091424] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/03/2022] [Revised: 04/14/2022] [Accepted: 04/18/2022] [Indexed: 11/21/2022]
Abstract
Synthetic amorphous silica (SAS) is a nanomaterial used in a wide variety of applications, including the use as a food additive. Two types of SAS are commonly employed as a powder additive, precipitated silica and fumed silica. Numerous studies have investigated the effects of synthetic amorphous silica on mammalian cells. However, most of them have used an exposure scheme based on a single dose of SAS. In this study, we have used instead a repeated 10-day exposure scheme in an effort to better simulate the occupational exposure encountered in daily life by consumers and workers. As a biological model, we have used the murine macrophage cell line J774A.1, as macrophages are very important innate immune cells in the response to particulate materials. In order to obtain a better appraisal of the macrophage responses to this repeated exposure to SAS, we have used proteomics as a wide-scale approach. Furthermore, some of the biological pathways detected as modulated by the exposure to SAS by the proteomic experiments have been validated through targeted experiments. Overall, proteomics showed that precipitated SAS induced a more important macrophage response than fumed SAS at equal dose. Nevertheless, validation experiments showed that most of the responses detected by proteomics are indeed adaptive, as the cellular homeostasis appeared to be maintained at the end of the exposure. For example, the intracellular glutathione levels or the mitochondrial transmembrane potential at the end of the 10 days exposure were similar for SAS-exposed cells and for unexposed cells. Similarly, no gross lysosomal damage was observed after repeated exposure to SAS. Nevertheless, important functions of macrophages such as phagocytosis, TNFα, and interleukin-6 secretion were up-modulated after exposure, as was the expression of important membrane proteins such as the scavenger receptors, MHC-II, or the MAC-1 receptor. These results suggest that repeated exposure to low doses of SAS slightly modulates the immune functions of macrophages, which may alter the homeostasis of the immune system.
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Affiliation(s)
- Anaelle Torres
- Chemistry and Biology of Metals Laboratory, Université Grenoble Alpes, Centre National de la Recherche Scientifique, Commissariat à l’Energie Atomique, Interdisciplinary Research Institute of Grenoble, 38054 Grenoble, France; (A.T.); (V.C.-F.)
| | - Véronique Collin-Faure
- Chemistry and Biology of Metals Laboratory, Université Grenoble Alpes, Centre National de la Recherche Scientifique, Commissariat à l’Energie Atomique, Interdisciplinary Research Institute of Grenoble, 38054 Grenoble, France; (A.T.); (V.C.-F.)
| | - Hélène Diemer
- Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO), Centre National de la Rech erche Scientifique, Hubert Curien Pluridisciplinary Institute UMR 7178, Strasbourg University, 67087 Strasbourg, France; (H.D.); (S.C.)
- Infrastructure Nationale de Protéomique ProFI—FR2048, 67087 Strasbourg, France
| | - Christine Moriscot
- Integrated Structural Biology Grenoble (ISBG), European Molecular Biology Laboratory Université Grenoble Alpes, Centre National de la Recherche Scientifique, Commissariat à l’Energie Atomique, 71 Avenue des Martyrs, 38042 Grenoble, France;
| | - Daphna Fenel
- Institute of Structural Biology (IBS), Université Grenoble Alpes, Centre National de la Recherche Scientifique, Commissariat à l’Energie Atomique, Interdisciplinary Research Institute of Grenoble, 38044 Grenoble, France; (D.F.); (B.G.)
| | - Benoît Gallet
- Institute of Structural Biology (IBS), Université Grenoble Alpes, Centre National de la Recherche Scientifique, Commissariat à l’Energie Atomique, Interdisciplinary Research Institute of Grenoble, 38044 Grenoble, France; (D.F.); (B.G.)
| | - Sarah Cianférani
- Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO), Centre National de la Rech erche Scientifique, Hubert Curien Pluridisciplinary Institute UMR 7178, Strasbourg University, 67087 Strasbourg, France; (H.D.); (S.C.)
- Infrastructure Nationale de Protéomique ProFI—FR2048, 67087 Strasbourg, France
| | | | - Thierry Rabilloud
- Chemistry and Biology of Metals Laboratory, Université Grenoble Alpes, Centre National de la Recherche Scientifique, Commissariat à l’Energie Atomique, Interdisciplinary Research Institute of Grenoble, 38054 Grenoble, France; (A.T.); (V.C.-F.)
- Correspondence: ; Tel.: +33-43-878-3212
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