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Huseynov EZ, Akkurt M, Brito I, Bhattarai A, Rzayev RM, Asadov KA, Maharramov AM. Crystal structure and Hirshfeld surface analysis of 1-(2-amino-4-methyl-1,3-thia-zol-5-yl)ethan-1-one. Acta Crystallogr E Crystallogr Commun 2023; 79:890-894. [PMID: 37817958 PMCID: PMC10561208 DOI: 10.1107/s2056989023007181] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2023] [Accepted: 08/16/2023] [Indexed: 10/12/2023]
Abstract
In the title compound, C6H8N2OS, all atoms except for the methyl H atoms are coplanar, with a maximum deviation of 0.026 (4) Å. In the crystal, pairs of mol-ecules are linked by N-H⋯N hydrogen bonds, forming R 2 2(8) ring motifs. Dimers are connected by N-H⋯O hydrogen bonds, forming layers parallel to the (102) plane. Consolidating the mol-ecular packing, these layers are connected by C-H⋯π inter-actions between the center of the 1,3-thia-zole ring and the H atom of the methyl group attached to it, as well as C=O⋯π inter-actions between the center of the 1,3-thia-zole ring and the O atom of the carboxyl group. According to a Hirshfeld surface study, H⋯H (37.6%), O⋯H/H⋯O (16.8%), S⋯H/H⋯S (15.4%), N⋯H/H⋯N (13.0%) and C⋯H/H⋯C (7.6%) inter-actions are the most significant contributors to the crystal packing.
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Affiliation(s)
- Elnur Z. Huseynov
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye
| | - Ivan Brito
- Departamento de Química, Facultad de Ciencias Básicas, Universidad de Antofagasta, Avenida Angamos 601, Casilla 170, Antofagasta 1240000, Chile
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C. (Tribhuvan University) Biratnagar, Nepal
| | - Rovnag M. Rzayev
- "Composite Materials" Scientific Research Center, Azerbaijan State Economic University (UNEC), H. Aliyev str. 135, Az1063, Baku, Azerbaijan
| | - Khammed A. Asadov
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Abel M. Maharramov
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, Az, 1148 Baku, Azerbaijan
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2
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Huseynov EZ, Akkurt M, Brito I, Bhattarai A, Naghiyev FN, Asadov KA, Maharramov AM. Crystal structure and Hirshfeld surface analysis of 2-amino-5-{(1 E)-1-[(carbamo-thioyl-amino)-imino]eth-yl}-4-methyl-1,3-thia-zol-3-ium chloride monohydrate. Acta Crystallogr E Crystallogr Commun 2023; 79:808-812. [PMID: 37693676 PMCID: PMC10483551 DOI: 10.1107/s2056989023007090] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Accepted: 08/11/2023] [Indexed: 09/12/2023]
Abstract
In the hydrated title salt, C7H12N5S2 +·Cl-·H2O, the asymmetric unit comprises one 2-amino-5-{(1E)-1-[(carbamo-thioyl-amino)-imino]-eth-yl}-4-methyl-1,3-thia-zol-3-ium cation, one chloride anion and one water mol-ecule of crystallization. The cation is nearly flat (r.m.s. deviation of non-H atoms is 0.0814 Å), with the largest deviation of 0.1484 (14) Å observed for one of the methyl C atoms. In the crystal, the cations are linked by O-H⋯Cl, N-H⋯Cl, N-H⋯O, N-H⋯S and C-H⋯S hydrogen bonds, forming a tri-periodic network. The most important contributions to the crystal packing are from H⋯H (35.4%), S⋯H/H⋯S (24.4%), N⋯H/H⋯N (8.7%), Cl⋯H/H⋯Cl (8.2%) and C⋯H/H⋯C (7.7%) inter-actions.
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Affiliation(s)
- Elnur Z. Huseynov
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye
| | - Ivan Brito
- Departamento de Química, Facultad de Ciencias Básicas, Universidad de Antofagasta, Avenida Angamos 601, Casilla 170, Antofagasta 1240000, Chile
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C (Tribhuvan University) Biratnagar, Nepal
| | - Farid N. Naghiyev
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Khammed A. Asadov
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Abel M. Maharramov
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, Az, 1148 Baku, Azerbaijan
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Sharma D, Kumar M, Kumar S, Basu A, Bhattacherjee D, Chaudhary A, Das P. Application of Cyclohexane‐1,3‐diones in the Synthesis of Six‐Membered Nitrogen‐Containing Heterocycles. ChemistrySelect 2022. [DOI: 10.1002/slct.202200622] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/08/2022]
Affiliation(s)
- Dharminder Sharma
- Department of Chemistry Jagdish Chandra DAV College Dasuya Punjab 144205 India
| | - Manish Kumar
- Department of Chemistry Govt. College Seraj at Lambathach 175048 HP Mandi India
- Chemical Technology Department CSIR-Institute of Himalayan Bioresource Technology Palampur 176061, HP India
| | - Sandeep Kumar
- Department of Chemistry DAV University Jalandhar 144012 Punjab India
- Chemical Technology Department CSIR-Institute of Himalayan Bioresource Technology Palampur 176061, HP India
| | - Amartya Basu
- Department of General Medicine Kalinga Institute of Medical Sciences Bhubaneswar 751024 Odisha India
| | - Dhananjay Bhattacherjee
- Chemical Technology Department CSIR-Institute of Himalayan Bioresource Technology Palampur 176061, HP India
| | - Abha Chaudhary
- Chemical Technology Department CSIR-Institute of Himalayan Bioresource Technology Palampur 176061, HP India
- Department of Chemistry Government Post Graduate College Ambala Cantt Haryana 133001 India
| | - Pralay Das
- Chemical Technology Department CSIR-Institute of Himalayan Bioresource Technology Palampur 176061, HP India
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4
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Dikusar EA, Akishina EA, Petkevich SK, Zhukouskaya NA, Alekseyev RS, Bumagin NA, Shahab SN, Filippovich LN, Potkin VI. Synthesis of Bisacridine Derivatives with Pyridine and 1,2-Azole Fragments. RUSS J GEN CHEM+ 2022. [DOI: 10.1134/s1070363222010078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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5
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Naghiyev FN, Tereshina TA, Khrustalev VN, Akkurt M, Rzayev RM, Akobirshoeva AA, Mamedov İG. Crystal structure and Hirshfeld surface analysis of 6-amino-8-(2,6-di-chloro-phen-yl)-1,3,4,8-tetra-hydro-2 H-pyrido[1,2- a]pyrimidine-7,9-dicarbo-nitrile. Acta Crystallogr E Crystallogr Commun 2021; 77:516-521. [PMID: 34026256 PMCID: PMC8100256 DOI: 10.1107/s2056989021003583] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2021] [Accepted: 04/02/2021] [Indexed: 11/20/2022]
Abstract
In the mol-ecular structure of the title compound, C16H13Cl2N5, the 1,4-di-hydro-pyridine ring of the 1,3,4,8-tetra-hydro-2H-pyrido[1,2-a]pyrimidine ring system adopts a screw-boat conformation, while the 1,3-diazinane ring is puckered. In the crystal, inter-molecular N-H⋯N and C-H⋯N hydrogen bonds form mol-ecular sheets parallel to the (110) and (10) planes, crossing each other. Adjacent mol-ecules are further linked by C-H⋯π inter-actions, which form zigzag chains propagating parallel to [100]. A Hirshfeld surface analysis indicates that the most significant contributions to the crystal packing are from N⋯H/H⋯N (28.4%), H⋯H (24.5%), C⋯H/H⋯C (21.4%) and Cl⋯H/H⋯Cl (16.1%) contacts.
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Affiliation(s)
- Farid N. Naghiyev
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Tatiana A. Tereshina
- Peoples’ Friendship University of Russia (RUDN University), Miklukho-Maklay St. 6, Moscow, 117198, Russian Federation
| | - Victor N. Khrustalev
- Peoples’ Friendship University of Russia (RUDN University), Miklukho-Maklay St. 6, Moscow, 117198, Russian Federation
- N. D. Zelinsky Institute of Organic Chemistry RAS, Leninsky Prosp. 47, Moscow, 119991, Russian Federation
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Rovnag M. Rzayev
- "Composite Materials" Scientific Research Center, Azerbaijan State Economic University (UNEC), H. Aliyev str. 135, Az 1063, Baku, Azerbaijan
| | - Anzurat A. Akobirshoeva
- Acad. Sci. Republ. Tadzhikistan, Kh. Yu. Yusufbekov Pamir Biol. Inst., 1 Kholdorova St, Khorog 736002, Gbao, Tajikistan
| | - İbrahim G. Mamedov
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, Az, 1148 Baku, Azerbaijan
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6
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Sahiba N, Sethiya A, Soni J, Agarwal S. Acridine‐1,8‐diones: Synthesis and Biological Applications. ChemistrySelect 2021. [DOI: 10.1002/slct.202004536] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Nusrat Sahiba
- Synthetic Organic Chemistry Laboratory Department of Chemistry, MLSU Udaipur 313001 India
| | - Ayushi Sethiya
- Synthetic Organic Chemistry Laboratory Department of Chemistry, MLSU Udaipur 313001 India
| | - Jay Soni
- Synthetic Organic Chemistry Laboratory Department of Chemistry, MLSU Udaipur 313001 India
| | - Shikha Agarwal
- Synthetic Organic Chemistry Laboratory Department of Chemistry, MLSU Udaipur 313001 India
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7
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Duruskari GS, Khalilov AN, Mammadova GZ, Çelikesir ST, Akkurt M, Akobirshoeva AA, Maharramov AM. Crystal structure and Hirshfeld surface analysis of ( E)-3-[(4-methyl-benzyl-idene)amino]-5-phenylthiazolidin-2-iminium bromide N, N-di-methyl-formamide monosolvate. Acta Crystallogr E Crystallogr Commun 2020; 76:1694-1698. [PMID: 33117592 PMCID: PMC7534233 DOI: 10.1107/s2056989020012712] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2020] [Accepted: 09/18/2020] [Indexed: 11/25/2022]
Abstract
In the cation of the title salt, C17H18N3S+·Br-·C3H7NO, the central thia-zolidine ring adopts an envelope conformation with puckering parameters Q(2) = 0.310 (3) Å and φ(2) = 42.2 (6)°. In the crystal, each cation is connected to two anions by N-H⋯ Br hydrogen bonds, forming an R 4 2(8) motif parallel to the (10) plane. van der Waals inter-actions between the cations, anions and N,N-di-methyl-formamide mol-ecules further stabilize the crystal structure in three dimensions. The most important contributions to the surface contacts are from H⋯H (55.6%), C⋯H/H⋯C (17.9%) and Br⋯H/H⋯Br (7.0%) inter-actions, as concluded from a Hirshfeld analysis.
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Affiliation(s)
- Gulnara Sh. Duruskari
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Ali N. Khalilov
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, Az, 1148 Baku, Azerbaijan
- Department of Physics and Chemistry, "Composite Materials" Scientific Research Center, Azerbaijan State Economic University (UNEC), H. Aliyev str. 135, Az 1063, Baku, Azerbaijan
| | - Gunay Z. Mammadova
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, Az, 1148 Baku, Azerbaijan
| | | | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Anzurat A. Akobirshoeva
- Academy of Science of the Republic of Tadzhikistan, Kh. Yu. Yusufbekov Pamir Biology Institute, 1 Kholdorova St, Khorog 736002, Gbao, Tajikistan
| | - Abel M. Maharramov
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, Az, 1148 Baku, Azerbaijan
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Mohareb RM, Megally Abdo NY, Gamaan MS. Uses of cyclohexan‐1,3‐dione for the synthesis of tetrahydrochromeno[3,4‐
c
]chromen derivatives with anti‐tumor activities. J Heterocycl Chem 2020. [DOI: 10.1002/jhet.3966] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Rafat M. Mohareb
- Department of Chemistry, Faculty of ScienceCairo University Giza Egypt
| | | | - Marwa S. Gamaan
- Department of Chemistry, Faculty of ScienceCairo University Giza Egypt
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9
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Uses of dimedone for the synthesis of new heterocyclic derivatives with anti-tumor, c-Met, tyrosine, and Pim-1 kinases inhibitions. Med Chem Res 2018. [DOI: 10.1007/s00044-018-2208-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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10
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Aqua-mediated synthesis of acridinediones with reusable silica-supported sulfuric acid as an efficient catalyst. JOURNAL OF TAIBAH UNIVERSITY FOR SCIENCE 2018. [DOI: 10.1016/j.jtusci.2014.03.003] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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11
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Mallu L, Thirumalai D, Asharani IV. One-pot cascade synthesis and in vitro evaluation of anti-inflammatory and antidiabetic activities of S-methylphenyl substituted acridine-1,8-diones. Chem Biol Drug Des 2017; 90:520-526. [PMID: 28294548 DOI: 10.1111/cbdd.12973] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2016] [Revised: 01/28/2017] [Accepted: 02/28/2017] [Indexed: 11/27/2022]
Abstract
Various S-methylphenyl substituted acridine-1,8-dione series (4a-i) were synthesized through a one-pot cascade synthetic approach involving the reaction of 4-(methylthio)benzaldehyde and dimedone with a variety of amines as nitrogen source under reflux in ethanol. All the synthesized derivatives were characterized by using spectroscopic methods. In vitro evaluations of anti-inflammatory and antidiabetic efficacies of all the synthesized compounds were investigated. The anti-inflammatory results infer that the compounds 4c and 4d are showing excellent activity with an inhibition percentage of 80.58 ± 0.42, 81.72 ± 1.72 by membrane stabilization and 77.72 ± 0.76, 78.76 ± 0.81 by albumin denaturation methods, which is comparable with the standard diclofenac at a concentration of 100 μg/ml. Further, the antidiabetic assay revealed the moderate activity for the synthesized compounds at a concentration of 100 μg/ml with respect to their standard drug, acarbose.
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Affiliation(s)
- Lavanya Mallu
- Department of Chemistry, School of Advanced Sciences, VIT University, Vellore, Tamil Nadu, India
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12
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Green and efficient synthesis of acridine-1,8-diones and hexahydroquinolines via a KH2PO4 catalyzed Hantzsch-type reaction in aqueous ethanol. RESEARCH ON CHEMICAL INTERMEDIATES 2016. [DOI: 10.1007/s11164-016-2814-2] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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13
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Pugazhenthi I, Ghouse SM, Nawaz Khan FR, Jeong ED, Bae JS, Kim JP, Chung EH, Kumar YS, Dasaradhan C. Water mediated reactions: TiO2and ZnO nanoparticle catalyzed multi component domino reaction in the synthesis of tetrahydroacridinediones, acridindiones, xanthenones and xanthenes. RSC Adv 2015. [DOI: 10.1039/c4ra13045f] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Tetrahydroacridine-1,8-(2H,5H,9H,10H)-diones4from 1,3-cyclohexanedione and/or dimedone 1,2-chloro-3-formylquinoline2and anilines3in water at 90 °C were obtained by domino reaction approach.
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Affiliation(s)
- Ilangovan Pugazhenthi
- Organic and Medicinal Chemistry Research Laboratory
- Organic Chemistry Division
- School of Advanced Sciences
- VIT-University
- Vellore 632 014
| | - Shaik Mohammed Ghouse
- Organic and Medicinal Chemistry Research Laboratory
- Organic Chemistry Division
- School of Advanced Sciences
- VIT-University
- Vellore 632 014
| | - Fazlur-Rahman Nawaz Khan
- Organic and Medicinal Chemistry Research Laboratory
- Organic Chemistry Division
- School of Advanced Sciences
- VIT-University
- Vellore 632 014
| | - Euh Duck Jeong
- Korea Basic Science Institute
- Busan Center
- Busan 618 230
- South Korea
| | - Jong Seong Bae
- Korea Basic Science Institute
- Busan Center
- Busan 618 230
- South Korea
| | - Jong-Pil Kim
- Korea Basic Science Institute
- Busan Center
- Busan 618 230
- South Korea
| | - Eun Hyuk Chung
- Korea Basic Science Institute
- Busan Center
- Busan 618 230
- South Korea
| | - Yadavalli Suneel Kumar
- Organic and Medicinal Chemistry Research Laboratory
- Organic Chemistry Division
- School of Advanced Sciences
- VIT-University
- Vellore 632 014
| | - Changalraya Dasaradhan
- Organic and Medicinal Chemistry Research Laboratory
- Organic Chemistry Division
- School of Advanced Sciences
- VIT-University
- Vellore 632 014
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14
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Poly(4-Vinylpyridinium)Hydrogen Sulfate Catalyzed an Efficient and Ecofriendly Protocol for the One-Pot Multicomponent Synthesis of 1,8-Acridinediones in Aqueous Medium. J CHEM-NY 2013. [DOI: 10.1155/2013/850254] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Highly efficient, ecofriendly, and improved protocol for the synthesis of 1,8-acridinediones has been developedviaone-pot multicomponent condensation of 1,3-cyclohexanedione/dimedone, aromatic aldehydes, and ammonium acetate utilizing poly(4-vinylpyridinium)hydrogen sulfate as catalyst in aqueous medium. Excellent yields in shorter reaction time, simple work-up procedure, easy recovery, and reusability of the catalyst are attractive features of this green protocol.
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