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Nakamura T, Yano S, Liu YF, Nabeshima T. Formation of a Metallomacrocycle Possessing Nitrogen Donors Assembled in the Cavity and Unique Water Clusters. Inorg Chem 2024; 63:12697-12702. [PMID: 38950409 DOI: 10.1021/acs.inorgchem.4c01542] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/03/2024]
Abstract
2,2'-Bipyridyl (bpy) is widely used as a chelating unit for metal complexation but is not usually considered as a hydrogen-bonding unit. This is because the metal-free bpy units are usually in a transoid conformation, and the two nitrogen lone pairs are pointed to the opposite sides. We now report a metallomacrocycle whose three metal-free bpy units are in a cisoid conformation and are fixed in the cavity. The complexation of nickel(II) only at the salen units of the triangular bpytrisalen ligand produced this rigid and planar macrocycle. Its cavity is surrounded by hydrogen-bond acceptors (N of bpy and O of salen), and it was found that unique pentagonal prism clusters of water molecules templated by the cavity were formed in the crystal. This study has not only increased the variation of the synthetic methodologies of multinuclear complexes but has also provided the structural platform on which multiple bpy units exert hydrogen-bonding functions.
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Affiliation(s)
- Takashi Nakamura
- Institute of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
| | - Syuhei Yano
- Graduate School of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
| | - Yi-Fu Liu
- Degree Programs in Pure and Applied Sciences, Graduate School of Science and Technology, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
| | - Tatsuya Nabeshima
- Institute of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
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2
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Zhao Q, Chen X, Huang G. The crystal structure of catena-poly[(1,10-phenanthroline-κ 2
N, N′)-(μ 3-2-hydroxybenzene-1,3-dicarboxylato-κ 5
O, O′: O″, O‴: O‴)cadmium(II)], C 20H 12CdN 2O 5. Z KRIST-NEW CRYST ST 2022. [DOI: 10.1515/ncrs-2022-0389] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Abstract
C20H12CdN2O5, monoclinic, P2/c (no. 13), a = 8.6308(6) Å, b = 10.5180(6) Å, c = 18.6325(11) Å, β = 102.210(6)°, V = 1653.17(18) Å3, Z = 4, R
gt(F) = 0.0374, wR
ref(F
2) = 0.0856, T = 250 K.
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Affiliation(s)
- Qiang Zhao
- Sino-Portugal Belt and Road Joint Laboratory on Science of Cultural Heritage Conservation, City University of Macau , Macau , P. R. China
| | - Xinyu Chen
- Sino-Portugal Belt and Road Joint Laboratory on Science of Cultural Heritage Conservation, City University of Macau , Macau , P. R. China
| | - Guang Huang
- Sino-Portugal Belt and Road Joint Laboratory on Science of Cultural Heritage Conservation, City University of Macau , Macau , P. R. China
- Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai) , Zhuhai , Guangdong , P. R. China
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3
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Huang G. The crystal structure of poly[(1,10-phenanthroline-κ 2
N, N′)-( μ
4-2-chlorobenzene-1,3-dicarboxylato-κ 5
O: O′: O″: O‴) cadmium(II)] monohydrate, C 20H 13CdClN 2O 5. Z KRIST-NEW CRYST ST 2022. [DOI: 10.1515/ncrs-2022-0492] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Abstract
Abstract
C20H13CdClN2O5, monoclinic, P21/n (no. 14), a = 11.4994(9) Å, b = 13.1171(10) Å, c = 13.0233(10) Å, β = 109.126(8)°, V = 1856.0(3) Å3, Z = 4, R
gt(F) = 0.0341, wR
ref(F
2) = 0.0779, T = 293 K.
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Affiliation(s)
- Guang Huang
- Sino–Portugal Belt and Road Joint Laboratory on Science of Cultural Heritage Conservation, City University of Macau, Macau, and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai) , Zhuhai , Guangdong , P. R. China
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4
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Huang G, Chen X. Crystal structure of catena-poly[qua-(μ 2-2-aminoisophthalat-κ 3
O,O′: O′′)(1,10-phenanthroline-κ 2
N,N′)manganese(II)] C 20H 15MnN 3O 5. Z KRIST-NEW CRYST ST 2022. [DOI: 10.1515/ncrs-2022-0182] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
C20H15MnN3O5, monoclinic, P21/c (no. 14), a = 10.0223(5) Å, b = 9.3406(5) Å, c = 18.6978(10) Å, β = 99.322(6)°, V = 1727.27(16) Å3, Z = 4, R
gt
(F) = 0.0376, wR
ref
(F
2) = 0.0873, T = 250 K.
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Affiliation(s)
- Guang Huang
- Sino-Portugal Belt and Road Joint Laboratory on Science of Cultural Heritage Conservation, City University of Macau , Macau , P. R. China
- Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai) , Zhuhai , Guangdong , P. R. China
| | - Xinyun Chen
- Sino-Portugal Belt and Road Joint Laboratory on Science of Cultural Heritage Conservation, City University of Macau , Macau , P. R. China
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Gurbanov AV, Kuznetsov ML, Karmakar A, Aliyeva VA, Mahmudov KT, Pombeiro AJL. Halogen bonding in cadmium(II) MOFs: its influence on the structure and on the nitroaldol reaction in aqueous medium. Dalton Trans 2021; 51:1019-1031. [PMID: 34935834 DOI: 10.1039/d1dt03755b] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
A solvothermal reaction of Cd(II) with the dicarboxyl-functionalized arylhydrazone pro-ligands, 5-(2-(2,4,6-trioxotetrahydro-pyrimidin-5(2H)-ylidene)hydrazineyl)isophthalic acid (H5L1) and 5-(2-(2,4-dioxopentan-3-ylidene)hydrazineyl)isophthalic acid (H3L2), or their halogen bond donor centre(s) decorated analogs 2,4,6-triiodo-5-(2-(2,4,6-trioxotetrahydropyrimidin-5(2H)-ylidene)hydrazineyl)isophthalic acid (H5L3) and 5-(2-(2,4-dioxopentan-3-ylidene)hydrazineyl)-2,4,6-triiodoisophthalic acid (H3L4), leads to the formation of known [Cd(H3L1)(H2O)2]n (1) and new {[Cd(HL2)(H2O)2(DMF)]·H2O}n (2), [Cd(H3L3)]n (3) and {[Cd2(μ-H2O)2(μ-H2L4)2(H2L4)2]·2H2O}n (4) coordination compounds, respectively. The aggregation of mononuclear units via Cd-OC and Cd-OH2 coordination and CAr-I⋯I types of intramolecular halogen bonds lead to a dinuclear tecton 4. Both CAr-I⋯O and CAr-I⋯I types of intermolecular halogen bonds play a fundamental role in the supramolecular architectures of the obtained metal-organic frameworks 3 and 4. Theoretical (DFT) calculations confirmed the presence of the CAr-I⋯O and CAr-I⋯I halogen bonds in 3 and 4 and allowed their characterisation. The formation of intermolecular noncovalent interactions between the attached iodine substituents to the hydrazone ligands and polar solvent (water or methanol) molecules promoted, at least in part, the solubility of the corresponding complexes (3 and 4), which act as homogeneous catalyst precursors in the Henry reaction between aldehydes and nitroethane. The corresponding β-nitroalkanol products were obtained in good yields (66-79%) and with good diastereoselectivity (threo/erythro ca. 72 : 28) in water at room temperature.
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Affiliation(s)
- Atash V Gurbanov
- Centro de Química Estrutural, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisboa, Portugal. .,Department of Chemistry, Baku State University, Z. Xalilov Str. 23, Az 1148 Baku, Azerbaijan.
| | - Maxim L Kuznetsov
- Centro de Química Estrutural, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisboa, Portugal.
| | - Anirban Karmakar
- Centro de Química Estrutural, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisboa, Portugal.
| | - Vusala A Aliyeva
- Centro de Química Estrutural, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisboa, Portugal.
| | - Kamran T Mahmudov
- Centro de Química Estrutural, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisboa, Portugal. .,Department of Chemistry, Baku State University, Z. Xalilov Str. 23, Az 1148 Baku, Azerbaijan.
| | - Armando J L Pombeiro
- Centro de Química Estrutural, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisboa, Portugal. .,Peoples' Friendship University of Russia (RUDN University), Research Institute of Chemistry, 6 Miklukho-Maklaya St, Moscow, 117198, Russian Federation
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Mitrofanov AY, Rousselin Y, Guilard R, Brandès S, Bessmertnykh-Lemeune AG, Uvarova MA, Nefedov SE. Copper(ii) complexes with phosphorylated 1,10-phenanthrolines: from molecules to infinite supramolecular arrays. NEW J CHEM 2016. [DOI: 10.1039/c5nj03572d] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Supramolecular architectures based on copper(ii) complexes with diethoxyphosphoryl substituted 1,10-phenanthrolines are reported.
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Affiliation(s)
- Alexander Yu. Mitrofanov
- Institut de Chimie Moléculaire de l'Université de Bourgogne
- UMR CNRS 6302
- Univ. Bourgogne Franche-Comté
- 21078 Dijon
- France
| | - Yoann Rousselin
- Institut de Chimie Moléculaire de l'Université de Bourgogne
- UMR CNRS 6302
- Univ. Bourgogne Franche-Comté
- 21078 Dijon
- France
| | - Roger Guilard
- Institut de Chimie Moléculaire de l'Université de Bourgogne
- UMR CNRS 6302
- Univ. Bourgogne Franche-Comté
- 21078 Dijon
- France
| | - Stéphane Brandès
- Institut de Chimie Moléculaire de l'Université de Bourgogne
- UMR CNRS 6302
- Univ. Bourgogne Franche-Comté
- 21078 Dijon
- France
| | - Alla G. Bessmertnykh-Lemeune
- Institut de Chimie Moléculaire de l'Université de Bourgogne
- UMR CNRS 6302
- Univ. Bourgogne Franche-Comté
- 21078 Dijon
- France
| | - Marina A. Uvarova
- Kurnakov Institute of General and Inorganic Chemistry
- Russian Academy of Sciences
- Moscow
- Russia
| | - Sergey E. Nefedov
- Kurnakov Institute of General and Inorganic Chemistry
- Russian Academy of Sciences
- Moscow
- Russia
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7
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Syntheses, characterization and properties of silver, copper and palladium complexes from bis(oxazoline)-containing ligands. J SOLID STATE CHEM 2015. [DOI: 10.1016/j.jssc.2015.04.021] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Wang JH, Tang GM, Wang YT, Qin TX, Ng SW. Metal-directed assembly of coordination polymers with the versatile ligand 2-(1H-benzotriazol-1-yl) acetic acid: from discrete structures to two-dimensional networks. CrystEngComm 2014. [DOI: 10.1039/c3ce42099j] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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9
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Kuai HW, Cheng XC, Zhu XH. Zinc(II) and cadmium(II) coordination polymers with a tricarboxylate containing reduced Schiff base ligand: Structural characterization and luminescent property. Polyhedron 2013. [DOI: 10.1016/j.poly.2012.10.044] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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