1
|
Lenoir G, Flatres-Grall L, Muñoz-Tamayo R, David I, Friggens NC. Disentangling the dynamics of energy allocation to develop a proxy for robustness of fattening pigs. Genet Sel Evol 2023; 55:77. [PMID: 37936078 PMCID: PMC10629156 DOI: 10.1186/s12711-023-00851-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2022] [Accepted: 10/26/2023] [Indexed: 11/09/2023] Open
Abstract
BACKGROUND There is a growing need to improve robustness of fattening pigs, but this trait is difficult to phenotype. Our first objective was to develop a proxy for robustness of fattening pigs by modelling the longitudinal energy allocation coefficient to growth, with the resulting environmental variance of this allocation coefficient considered as a proxy for robustness. The second objective was to estimate its genetic parameters and correlations with traits under selection and with phenotypes that are routinely collected. In total, 5848 pigs from a Pietrain NN paternal line were tested at the AXIOM boar testing station (Azay-sur-Indre, France) from 2015 to 2022. This farm is equipped with an automatic feeding system that records individual weight and feed intake at each visit. We used a dynamic linear regression model to characterize the evolution of the allocation coefficient between the available cumulative net energy, which was estimated from feed intake, and cumulative weight gain during the fattening period. Longitudinal energy allocation coefficients were analysed using a two-step approach to estimate both the genetic variance of the coefficients and the genetic variance in their residual variance, which will be referred to as the log-transformed squared residual (LSR). RESULTS The LSR trait, which could be interpreted as an indicator of the response of the animal to perturbations/stress, showed a low heritability (0.05 ± 0.01), a high favourable genetic correlation with average daily growth (- 0.71 ± 0.06), and unfavourable genetic correlations with feed conversion ratio (- 0.76 ± 0.06) and residual feed intake (- 0.83 ± 0.06). Segmentation of the population in four classes using estimated breeding values for LSR showed that animals with the lowest estimated breeding values were those with the worst values for phenotypic proxies of robustness, which were assessed using records routinely collected on farm. CONCLUSIONS Results of this study show that selection for robustness, based on estimated breeding values for environmental variance of the allocation coefficients to growth, can be considered in breeding programs for fattening pigs.
Collapse
Affiliation(s)
- Guillaume Lenoir
- Université Paris-Saclay, INRAE, AgroParisTech, UMR Modélisation Systémique Appliquée aux Ruminants, 91120, Palaiseau, France.
- GenPhySE, Université de Toulouse, INRAE, ENVT, 31320, Castanet Tolosan, France.
- AXIOM, 37310, Azay-Sur-Indre, France.
| | | | - Rafael Muñoz-Tamayo
- Université Paris-Saclay, INRAE, AgroParisTech, UMR Modélisation Systémique Appliquée aux Ruminants, 91120, Palaiseau, France
| | - Ingrid David
- GenPhySE, Université de Toulouse, INRAE, ENVT, 31320, Castanet Tolosan, France
| | - Nicolas C Friggens
- Université Paris-Saclay, INRAE, AgroParisTech, UMR Modélisation Systémique Appliquée aux Ruminants, 91120, Palaiseau, France
| |
Collapse
|
2
|
A porcine model of early-onset scoliosis combined with thoracic insufficiency syndrome: Construction and transcriptome analysis. Gene 2023; 858:147202. [PMID: 36646188 DOI: 10.1016/j.gene.2023.147202] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2022] [Revised: 01/06/2023] [Accepted: 01/11/2023] [Indexed: 01/15/2023]
Abstract
BACKGROUND Early-onset scoliosis (EOS) is a scoliosis deformity caused by various reasons before the age of 10 years and is often combined with thoracic insufficiency syndrome (TIS) causing patients with difficulty in securing lung growth in the thoracic cage. Currently, there is a shortage of effective large animal models for evaluating EOS + TIS in therapeutic studies. Consequently, we propose to construct a porcine EOS + TIS model and evaluate its transcriptome changes by RNA sequencing. METHODS Piglets were constructed using unilateral posterior spine-tethering and ipsilateral rib-tethering in the EOS + TIS model, and X-ray and computed tomography (CT) were performed to assess growth changes in the spine, thoracic cage and lungs. The H&E and Masson staining was performed for pathological analysis of lung tissue. After RNA sequencing of lung tissues, data were analyzed for differential expression of mRNA, functional enrichment analysis (GO, KEGG and GSEA) and protein-protein interaction (PPI) network construction, and differential expression of hub gene was verified by RT-qPCR. RESULTS In the model group, growth (body weight and length) of piglets was significantly delayed; fusion of ribs occurred and cobb angle changes in the coronal and sagittal planes were significantly enlarged; total lung volume (TLV) was significantly reduced, especially at the T7-T10 level. Pathological analysis revealed that, in the model lung tissue, the alveolar wall of was poorly perfused, the alveolar space was enlarged, the number and size of alveoli were significantly reduced, and it was accompanied by collagen fiber deposition. Moreover, a total of 432 differentially expressed mRNAs (DE-mRNAs) were identified in model lung tissues, which contained 262 down-regulated and 170 up-regulated DE-mRNAs, and they were mainly involved in the regulation of immunity, inflammation, cell cycle and extracellular matrix. A PPI network containing 71 nodes and 158 edges was constructed based on all DE-mRNAs, and JUN, CCL2, EGR1, ATF3, BTG2, DUSP1 and THBS1 etc. were hub gene. CONCLUSIONS Overall, we constructed a porcine model that was capable of replicating the common clinical features of EOS + TIS such as rib fusion, asymmetric thoracic cage, increased cobb angle, decreased TLV, and pulmonary hypoplasia. Also, we revealed transcriptomic changes in the EOS + TIS model that may cause pulmonary hypoplasia.
Collapse
|
3
|
Precision Feeding in Ecological Pig-Raising Systems with Maize Silage. Animals (Basel) 2022; 12:ani12111446. [PMID: 35681910 PMCID: PMC9179495 DOI: 10.3390/ani12111446] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2022] [Revised: 05/28/2022] [Accepted: 05/31/2022] [Indexed: 12/10/2022] Open
Abstract
Simple Summary Generally, ecological farming is regarded as an environmentally friendly production process with high costs. The plant fiber source (e.g., maize silage) has become a common practice to reduce the cost during the fattening period to gain more profit, which means a precision feed component is needed in ecological pig-raising systems (EPRS) for achieving the balance between environment and economic profit. This manuscript provided a suitable and easy-operated ratio of sun-dried maize silage added to the feed. Meanwhile, we tried to reveal the trends of the pig growth, environmental impacts, and economic profits with the sun-dried maize silage percentage and raising period increasing. Results showed that the best balance point between environmental impact and economic performance was 20% sun-dried maize silage added to the feed with a 360-day raising period. Abstract Ecological pig-raising systems (EPRSs) differ from conventional breeding systems, focusing more on environmental consequences, human health, and food safety during production processes. Thus productions from EPRSs have undergone significant development in China. Thus far, adding plant fiber sources (e.g., sweet potato leaves, maize or wheat straw, potato, alfalfa, and vinasse) to feed has become a common practice to reduce the cost during the fattening period. Under such a context, it is necessary to choose the precision EPRS diet components and fattening period with low environmental consequences and high economic benefits. This study set up a database via pig growth models to predict environmental and economic performance based on two trials with 0%, 10%, 40%, 60%, and 80% maize silage (dry weight) added to the feed. A continuous curve about plant fiber concentration was built through the generated database. Our results showed that, with increased plant fiber concentration, the environmental performance of the EPRSs exhibited an “increase-decrease-increase” trend, and the economic performance firstly increased and then decreased. The best maize silage added percentages of emergy yield ratio (EYR), environmental loading ratio (ELR), unit emergy value (UEV), and emergy sustainability index (ESI), and the economic profits were 19.0%, 34.3%, 24.6%, 19.9%, and 18.0%, respectively. Besides, the 19.9% sun-dried maize silage added to the feed with a 360-day raising period had the best balance for environmental impact and economic performance. At the balance point, the performances of EYR, ELR, UEV, ESI, and the economic profit were only 0.04%, 3.0%, 0.8%, 0.0%, and 0.1%, respectively, lower than their maximum values. Therefore, we recommended the feed added 20% sun-dried maize silage is suitable for practical pig raising systems.
Collapse
|
4
|
Vaudreuil N, Xue J, Ramanathan R, Tisherman R, Dombrowski M, Wang W, Bell K. Novel use of telescoping growth rods in treatment of early onset scoliosis: An in vivo and in vitro study in a porcine model. JOR Spine 2018; 1:e1035. [PMID: 31463451 PMCID: PMC6686829 DOI: 10.1002/jsp2.1035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/02/2018] [Revised: 08/28/2018] [Accepted: 09/01/2018] [Indexed: 11/08/2022] Open
Abstract
INTRODUCTION Treatment of early-onset scoliosis (EOS) can be difficult. Various forms of growing rods exist to correct deformity while delaying definitive spinal fusion. The disadvantage of traditional growing rods is need for repeated surgical lengthening procedures. Telescoping growth rods (TelGR) are a prototype new, guided growth technology with a rod mechanism that allows spontaneous longitudinal growth over time without manual lengthening. We hypothesized that the TelGR system will permit unrestricted growth with limited complications through 12 weeks in vivo, and that the range of motion (RoM) in each of three directions and stiffness of the TelGR system would not be significantly different than the rigid rod system in vitro. MATERIALS AND METHODS In vivo: Six immature pigs were surgically implanted with TelGR with cephalad fixation at T6-7 and caudal fixation at T14-L1. Radiographs of the involved vertebral segments were measured postoperatively and after 12 weeks. In vitro: A robotic testing system was utilized for flexibility tests in flexion-extension (FE), lateral bending (LB), and axial rotation (AR) of eight immature porcine specimens (T3-T15). Testing was performed on both dual rigid rods and bilateral TelGR with instrumentation at T4-5 and T13-14. RESULTS In vivo: Over the 12-week period, the rod length of the TelGR increased an average of 65 mm. In vitro: TelGR demonstrated significantly increased motion in LB and AR RoM compared with rigid rods. No difference was noted in FE RoM. DISCUSSION The in vivo results in this study showed expected skeletal growth with spines instrumented with TelGR. In vitro findings of increased RoM in AR and LB suggest that the TelGR system may be less rigid than traditional growing rods. Treatment with TelGR might, if proven efficacious in the clinical setting, decrease the need for repeated surgical intervention compared with traditional growing rods. This study adds to the limited body of biomechanical evidence examining guided growth technology.
Collapse
Affiliation(s)
- Nicholas Vaudreuil
- Department of Orthopaedic Surgery, School of MedicineUniversity of PittsburghPittsburghPennsylvania
| | - Jingbo Xue
- Department of Spine Surgerythe First Affiliated Hospital of University of South ChinaHengyang CityHunan ProvinceChina
| | - Rahul Ramanathan
- Department of Orthopaedic Surgery, School of MedicineUniversity of PittsburghPittsburghPennsylvania
| | - Robert Tisherman
- Department of Orthopaedic Surgery, School of MedicineUniversity of PittsburghPittsburghPennsylvania
| | - Malcolm Dombrowski
- Department of Orthopaedic Surgery, School of MedicineUniversity of PittsburghPittsburghPennsylvania
| | - Wen‐Jun Wang
- Department of Spine Surgerythe First Affiliated Hospital of University of South ChinaHengyang CityHunan ProvinceChina
| | - Kevin Bell
- Department of Orthopaedic Surgery, School of MedicineUniversity of PittsburghPittsburghPennsylvania
| |
Collapse
|
5
|
García O. Estimating reducible stochastic differential equations by conversion to a least-squares problem. Comput Stat 2018. [DOI: 10.1007/s00180-018-0837-4] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
|
6
|
|
7
|
Abstract
With the development of automatic self-feeders and electronic identification, automated, repeated measurements of individual feed intake (FI) and BW are becoming available in more species. Consequently, genetic models for longitudinal data need to be applied to study FI or related traits. To handle this type of data, several flexible mixed-model approaches exist such as character process (CPr), structured antedependence (SAD), or random regression (RR) models. The objective of this study was to compare how these different approaches estimate both the covariance structure between successive measurements of FI and genetic parameters and their ability to predict future performances in 3 species (rabbits, ducks, and pigs). Results were consistent between species. It was found that the SAD and CPr models fit the data better than the RR models. Estimations of genetic and phenotypic correlation matrices were quite consistent between SAD and CPr models, whereas correlations estimated with the RR model were not. Structured antedependence and CPr models provided, as expected and in accordance with previous studies, a decrease of the correlations with the time interval between measurements. The changes in heritability with time showed the same trend for the SAD and RR models but not for the CPr model. Our results show that, in comparison with the CPr model, the SAD and RR models have the advantage of providing stable predictions of future phenotypes 1 wk forward whatever the number of observations used to estimate the parameters. Therefore, to study repeated measurements of FI, the SAD approach seems to be very appropriate in terms of genetic selection and real-time managements of animals.
Collapse
|
8
|
Yun B, Yu X, Xue M, Liu Y, Wang J, Wu X, Han F, Liang X. Effects of dietary protein levels on the long-term growth response and fitting growth models of gibel carp ( Carassius auratus gibelio). ACTA ACUST UNITED AC 2015; 1:70-76. [PMID: 29767025 PMCID: PMC5884471 DOI: 10.1016/j.aninu.2015.05.003] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2014] [Accepted: 03/04/2015] [Indexed: 12/01/2022]
Abstract
A 41-wk growth trial was conducted to evaluate the effects of dietary protein levels on the long-term growth response and fitting growth models of gibel carp (Carassius auratus gibelio) with an initial body weight of 1.85 ± 0.17 g. The dietary protein levels were designed at 320 (P32), 360 (P36), 400 (P40), and 440 g/kg (P44), respectively. The growth curves of the gibel carp for each group were fitted and analyzed with four nonlinear regression models (Gompertz, logistic, von Bertalanffy and Richards). The final body weights (mean ± SD) of the fish were 226 ± 6, 231 ± 7, 242 ± 2, and 236 ± 2 g for P32, P36, P40, and P44, respectively. Feed conversion ratio of P40 and P44 groups was significantly lower than that of P32 and P36 groups (P < 0.05). Productive protein value of P44 group was significantly lower than that of P32 and P36 groups, but not different from that of P40 group (P ≥ 0.05). The growth response of the gibel carp for each group was the best fitted by Richards model with the lowest Chi2, residual sum of squares and residual variance, then Gompertz and von Bertalanffy growth models, but the logistic model did not fit the data well justified by Chi2 values. The optimal protein level (400 g/kg) prolonged the stage of fast growth and predicted the highest asymptotic weight, which was close to the harvest size in practice.
Collapse
Affiliation(s)
- Biao Yun
- National Aquafeed Safety Assessment Station, Feed Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China.,Haid Group, Guangdong 511400, China
| | - Xiaotong Yu
- National Aquafeed Safety Assessment Station, Feed Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Min Xue
- National Aquafeed Safety Assessment Station, Feed Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China.,Key Laboratory of Feed Biotechnology of Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Ying Liu
- National Aquafeed Safety Assessment Station, Feed Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Jia Wang
- National Aquafeed Safety Assessment Station, Feed Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Xiufeng Wu
- National Aquafeed Safety Assessment Station, Feed Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Fang Han
- National Aquafeed Safety Assessment Station, Feed Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Xufang Liang
- College of Fisheries, Huazhong Agricultural University, Wuhan 430070, China
| |
Collapse
|
9
|
Gundersen K, Kvaløy JT, Eftestøl T, Kramer-Johansen J. Modelling ventricular fibrillation coarseness during cardiopulmonary resuscitation by mixed effects stochastic differential equations. Stat Med 2015; 34:3159-69. [DOI: 10.1002/sim.6539] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2013] [Revised: 03/16/2015] [Accepted: 05/07/2015] [Indexed: 11/09/2022]
Affiliation(s)
- Kenneth Gundersen
- Department of Electrical Engineering and Computer Science, Faculty of Science and Technology; University of Stavanger; Stavanger Norway
| | - Jan Terje Kvaløy
- Department of Mathematics and Natural Sciences, Faculty of Science and Technology; University of Stavanger; Stavanger Norway
| | - Trygve Eftestøl
- Department of Electrical Engineering and Computer Science, Faculty of Science and Technology; University of Stavanger; Stavanger Norway
| | - Jo Kramer-Johansen
- Norwegian National Advisory Unit on Prehospital Emergency Medicine and Department of Anesthesiology; Oslo University Hospital and University of Oslo; Oslo Norway
| |
Collapse
|
10
|
The bijection from data to parameter space with the standard DEB model quantifies the supply–demand spectrum. J Theor Biol 2014; 354:35-47. [DOI: 10.1016/j.jtbi.2014.03.025] [Citation(s) in RCA: 55] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2013] [Revised: 03/12/2014] [Accepted: 03/13/2014] [Indexed: 11/23/2022]
|
11
|
Tonar Z, Kochova P, Cimrman R, Perktold J, Witter K. Segmental differences in the orientation of smooth muscle cells in the tunica media of porcine aortae. Biomech Model Mechanobiol 2014; 14:315-32. [DOI: 10.1007/s10237-014-0605-5] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2014] [Accepted: 07/01/2014] [Indexed: 01/29/2023]
|
12
|
|
13
|
Lampl M. Perspectives on modelling human growth: Mathematical models and growth biology. Ann Hum Biol 2012; 39:342-51. [DOI: 10.3109/03014460.2012.704072] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
|
14
|
Picchini U, Ditlevsen S. Practical estimation of high dimensional stochastic differential mixed-effects models. Comput Stat Data Anal 2011. [DOI: 10.1016/j.csda.2010.10.003] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
|