Multiscale analysis of collective motion and decision-making in swarms: an advection-diffusion equation with memory approach

Front Propagation of Exponentially Truncated Fractional-Order Epidemics

The existence of landscape constraints in the home range of living organisms that adopt Lévy-flight movement patterns, prevents them from making arbitrarily large displacements. Their random movements indeed occur in a finite space with an upper bound. In order to make realistic models, by introducing exponentially truncated Lévy flights, such an upper bound can thus be taken into account in the reaction-diffusion models. In this work, we have investigated the influence of the λ-truncated fractional-order diffusion operator on the spatial propagation of the epidemics caused by infectious diseases, where λ is the truncation parameter. Analytical and numerical simulations show that depending on the value of λ, different asymptotic behaviours of the travelling-wave solutions can be identified. For small values of λ (λ≳0), the tails of the infective waves can decay algebraically leading to an exponential growth of the epidemic speed. In that case, the truncation has no impact on the superdiffusive epidemics. By increasing the value of λ, the algebraic decaying tails can be tamed leading to either an upper bound on the epidemic speed representing the maximum speed value or the generation of the infective waves of a constant shape propagating at a minimum constant speed as observed in the classical models (second-order diffusion epidemic models). Our findings suggest that the truncated fractional-order diffusion equations have the potential to model the epidemics of animals performing Lévy flights, as the animal diseases can spread more smoothly than the exponential acceleration of the human disease epidemics.

Collective Motion of Swarming Agents Evolving on a Sphere Manifold: A Fundamental Framework and Characterization

Collective motion of self-propelled agents has attracted much attention in vast disciplines. However, almost all investigations focus on such agents evolving in the Euclidean space, with rare concern of swarms on non-Euclidean manifolds. Here we present a novel and fundamental framework for agents evolving on a sphere manifold, with which a variety of concrete cooperative-rules of agents can be designed separately and integrated easily into the framework, which may perhaps pave a way for considering general spherical collective motion (SCM) of a swarm. As an example, one concrete cooperative-rule, i.e., the spherical direction-alignment (SDA), is provided, which corresponds to the usual and popular direction-alignment rule in the Euclidean space. The SCM of the agents with the SDA has many unique statistical properties and phase-transitions that are unexpected in the counterpart models evolving in the Euclidean space, which unveils that the topology of the sphere has an important impact on swarming emergence.

Pattern Formation in Populations with Density-Dependent Movement and Two Interaction Scales

We study the spatial patterns formed by a system of interacting particles where the mobility of any individual is determined by the population crowding at two different spatial scales. In this way we model the behavior of some biological organisms (like mussels) that tend to cluster at short ranges as a defensive strategy, and strongly disperse if there is a high population pressure at large ranges for optimizing foraging. We perform stochastic simulations of a particle-level model of the system, and derive and analyze a continuous density description (a nonlinear diffusion equation). In both cases we show that this interplay of scale-dependent-behaviors gives rise to a rich formation of spatial patterns ranging from labyrinths to periodic cluster arrangements. In most cases these clusters have the very peculiar appearance of ring-like structures, i.e., organisms arranging in the perimeter of the clusters, which we discuss in detail.

Systems biology of complex symptom profiles: capturing interactivity across behavior, brain and immune regulation

As our thinking about the basic principles of biology and medicine continue to evolve, the importance of context and regulatory interaction is becoming increasingly obvious. Biochemical and physiological components do not exist in isolation but instead are part of a tightly integrated network of interacting elements that ensure robustness and support the emergence of complex behavior. This integration permeates all levels of biology from gene regulation, to immune cell signaling, to coordinated patterns of neuronal activity and the resulting psychosocial interaction. Systems biology is an emerging branch of science that sits as a translational catalyst at the interface of the life and computational sciences. While there is no universally accepted definition of systems biology, we attempt to provide an overview of some the basic unifying concepts and current efforts in the field as they apply to illnesses where brain and subsequent behavior are a chief component, for example autism, schizophrenia, depression, and others. Methods in this field currently constitute a broad mosaic that stretches across multiple scales of biology and physiological compartments. While this work by no means constitutes an exhaustive list of all these methods, this work highlights the principal sub-disciplines presently driving the field as well as future directions of progress.

Cutting through the complexity of cell collectives

Via strength in numbers, groups of cells can influence their environments in ways that individual cells cannot. Large-scale structural patterns and collective functions underpinning virulence, tumour growth and bacterial biofilm formation are emergent properties of coupled physical and biological processes within cell groups. Owing to the abundance of factors influencing cell group behaviour, deriving general principles about them is a daunting challenge. We argue that combining mechanistic theory with theoretical ecology and evolution provides a key strategy for clarifying how cell groups form, how they change in composition over time, and how they interact with their environments. Here, we review concepts that are critical for dissecting the complexity of cell collectives, including dimensionless parameter groups, individual-based modelling and evolutionary theory. We then use this hybrid modelling approach to provide an example analysis of the evolution of cooperative enzyme secretion in bacterial biofilms.

Generating self-organizing collective behavior using separation dynamics from experimental data

Mathematical models for systems of interacting agents using simple local rules have been proposed and shown to exhibit emergent swarming behavior. Most of these models are constructed by intuition or manual observations of real phenomena, and later tuned or verified to simulate desired dynamics. In contrast to this approach, we propose using a model that attempts to follow an averaged rule of the essential distance-dependent collective behavior of real pigeon flocks, which was abstracted from experimental data. By using a simple model to follow the behavioral tendencies of real data, we show that our model can exhibit a wide range of emergent self-organizing dynamics such as flocking, pattern formation, and counter-rotating vortices.

Intelligent decisions from the hive mind: foragers and nectar receivers of Apis mellifera collaborate to optimise active forager numbers

We present a differential equation-based mathematical model of nectar foraging by the honey bee Apis mellifera. The model focuses on two behavioural classes; nectar foragers and nectar receivers. Results generated from the model are used to demonstrate how different classes within a collective can collaborate to combine information and produce finely tuned decisions through simple interactions. In particular we show the importance of the 'search time' - the time a returning forager takes to find an available nectar receiver - in restricting the forager population to a level consistent with colony-wide needs.