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Duan Y, Chen Q, Bilal M, Wu Y, Gong Z, Wu R, Miao J. Comparative Transcriptome Analysis Reveals Different Responses in Three Developmental Stages of Mythimna loreyi to Cold Stress. INSECTS 2024; 15:554. [PMID: 39057286 PMCID: PMC11276649 DOI: 10.3390/insects15070554] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2024] [Revised: 07/09/2024] [Accepted: 07/16/2024] [Indexed: 07/28/2024]
Abstract
The loreyi leafworm Mythimna loreyi (Lepidoptera: Noctuidae) is a serious pest of agriculture that causes particular damage to Gramineae crops in Asia, Europe, Australia, Africa, and the Middle East. Low temperature is one of the important environmental factors that limits the survival, distribution, colonization, and abundance of M. loreyi. However, the metabolic synthesis pathways of cold-tolerant substances in M. loreyi and the key genes involved in the regulation under cold stress remain largely unknown. In this study, we sequenced the transcriptomes of three developmental stages (larvae, pupae, and adults) of M. loreyi to discover the molecular mechanisms of their responses to cold stress. In total, sequencing generated 120.64 GB of clean data from 18 samples, of which 19,459 genes and 1740 differentially expressed genes (DEGs) were identified. The enrichment analysis of Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) revealed that many DEGs were mainly enriched in pathways associated with energy metabolism and hormone metabolism. Among these, genes encoding multiple metabolic enzymes, cuticle proteins (CPs), and heat shock proteins (HSPs) were differentially expressed. These results indicate that there are significant differences among the three developmental stages of M. loreyi exposed to cold stress and provide a basis for further studying the molecular mechanisms of cold tolerance in insects.
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Affiliation(s)
- Yun Duan
- Henan Key Laboratory of Crop Pest Control, Key Laboratory of Integrated Pest Management on Crops in Southern Region of North China, Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou 450002, China; (Y.D.); (M.B.); (Y.W.); (Z.G.)
| | - Qi Chen
- Luohe Academy of Agricultural Sciences, Luohe 462000, China;
| | - Muhammad Bilal
- Henan Key Laboratory of Crop Pest Control, Key Laboratory of Integrated Pest Management on Crops in Southern Region of North China, Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou 450002, China; (Y.D.); (M.B.); (Y.W.); (Z.G.)
- College of Plant Protection, Henan Agricultural University, Zhengzhou 450002, China
| | - Yuqing Wu
- Henan Key Laboratory of Crop Pest Control, Key Laboratory of Integrated Pest Management on Crops in Southern Region of North China, Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou 450002, China; (Y.D.); (M.B.); (Y.W.); (Z.G.)
| | - Zhongjun Gong
- Henan Key Laboratory of Crop Pest Control, Key Laboratory of Integrated Pest Management on Crops in Southern Region of North China, Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou 450002, China; (Y.D.); (M.B.); (Y.W.); (Z.G.)
| | - Renhai Wu
- Henan Key Laboratory of Crop Pest Control, Key Laboratory of Integrated Pest Management on Crops in Southern Region of North China, Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou 450002, China; (Y.D.); (M.B.); (Y.W.); (Z.G.)
| | - Jin Miao
- Henan Key Laboratory of Crop Pest Control, Key Laboratory of Integrated Pest Management on Crops in Southern Region of North China, Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou 450002, China; (Y.D.); (M.B.); (Y.W.); (Z.G.)
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Xue D, Yang Y, Fang L, Wang S, Wu Y. Trehalose 6-phosphate synthase gene rdtps1 contributes to thermal acclimation in Rhyzopertha dominica. BMC Genomics 2024; 25:172. [PMID: 38350857 PMCID: PMC10863172 DOI: 10.1186/s12864-024-10028-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2023] [Accepted: 01/18/2024] [Indexed: 02/15/2024] Open
Abstract
BACKGROUND The lesser grain borer (Rhyzopertha dominica), a worldwide primary pest of stored grain, causes serious economic losses and threatens stored food safety. R. dominica can respond to changes in temperature, especially the adaptability to heat. In this study, transcriptome analysis of R. dominica exposed to different temperatures was performed to elucidate differences in gene expression and the underling molecular mechanism. RESULTS Isoform-sequencing generated 17,721,200 raw reads and yielded 20,416 full-length transcripts. A total of 18,880 (92.48%) transcripts were annotated. We extracted RNA from R. dominica reared at 5 °C (cold stress), 15 °C (cold stress), 27 °C (ambient temperature) and 40 °C (heat stress) for RNA-seq. Compared to those of control insects reared at 27 °C, 119, 342, and 875 differentially expressed genes (DEGs) were identified at 5 °C, 15 °C, and 40 °C, respectively. Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis revealed that pathways associated with "fatty acid metabolism", "fatty acid biosynthesis", "AMPK signaling pathway", "neuroactive ligand receptor interaction", and "longevity regulating pathway-multiple species" were significantly enriched. The functional annotation revealed that the genes encoding heat shock proteins (HSPs), fatty acid synthase (FAS), phospholipases (PLA), trehalose transporter (TPST), trehalose 6-phosphate synthase (TPS), and vitellogenin (Vg) were most likely involved in temperature regulation, which was also validated by RT-qPCR. Seven candidate genes (rdhsp1, rdfas1, rdpla1, rdtpst1, rdtps1, rdvg1, and rdP450) were silenced in the RNA interference (RNAi) assay. RNAi of each candidate gene suggested that inhibiting rdtps1 expression significantly decreased the trehalose level and survival rate of R. dominica at 40 °C. CONCLUSIONS These results indicated that trehalose contributes to the high temperature resistance of R. dominica. Our study elucidates the molecular mechanisms underlying heat tolerance and provides a potential target for the pest management in R. dominica.
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Affiliation(s)
- Dingrong Xue
- National Engineering Research Center of Grain Storage and Logistics, Academy of National Food and Strategic Reserves Administration, No. 11 Baiwanzhuang Street, Xicheng District, 100037, Beijing, China
| | - Yan Yang
- National Engineering Research Center of Grain Storage and Logistics, Academy of National Food and Strategic Reserves Administration, No. 11 Baiwanzhuang Street, Xicheng District, 100037, Beijing, China
- Henan Collaborative Innovation Center for Grain Storage Security, School of Food and Strategic Reserves, Henan University of Technology, 450001, Zhengzhou, China
| | - Liwei Fang
- Department of Microbiology and Immunology, University of Illinois Chicago, 60612, Chicago, USA
| | - Shibo Wang
- National Engineering Research Center of Grain Storage and Logistics, Academy of National Food and Strategic Reserves Administration, No. 11 Baiwanzhuang Street, Xicheng District, 100037, Beijing, China
- School of Health Science and Engineering, University of Shanghai for Science and Technology, 200093, Shanghai, China
| | - Yi Wu
- National Engineering Research Center of Grain Storage and Logistics, Academy of National Food and Strategic Reserves Administration, No. 11 Baiwanzhuang Street, Xicheng District, 100037, Beijing, China.
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Zhang H, Sun F, Zhang W, Gao X, Du L, Yun X, Li Y, Li L, Pang B, Tan Y. Comparative Transcriptome Analysis of Galeruca daurica Reveals Cold Tolerance Mechanisms. Genes (Basel) 2023; 14:2177. [PMID: 38136998 PMCID: PMC10742598 DOI: 10.3390/genes14122177] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2023] [Revised: 11/17/2023] [Accepted: 11/21/2023] [Indexed: 12/24/2023] Open
Abstract
Galeruca daurica (Joannis) is a pest species with serious outbreaks in the Inner Mongolian grasslands in recent years, and its larvae and eggs are extremely cold-tolerant. To gain a deeper understanding of the molecular mechanism of its cold-tolerant stress response, we performed de novo transcriptome assembly of G. daurica via RNA-Seq and compared the differentially expressed genes (DEGs) of first- and second-instar larvae grown and developed indoors and outdoors, respectively. The results show that cold tolerance in G. daurica is associated with changes in gene expression mainly involved in the glycolysis/gluconeogenesis pathway, the fatty acid biosynthesis pathway and the production of heat shock proteins (HSPs). Compared with the control group (indoor), the genes associated with gluconeogenesis, fatty acid biosynthesis and HSP production were up-regulated in the larvae grown and developed outdoors. While the changes in these genes were related to the physiological metabolism and growth of insects, it was hypothesized that the proteins encoded by these genes play an important role in cold tolerance in insects. In addition, we also investigated the expression of genes related to the metabolic pathway of HSPs, and the results show that the HSP-related genes were significantly up-regulated in the larvae of G. daurica grown and developed outdoors compared with the indoor control group. Finally, we chose to induce significant expression differences in the Hsp70 gene (Hsp70A1, Hsp70-2 and Hsp70-3) via RNAi to further illustrate the role of heat stress proteins in cold tolerance on G. daurica larvae. The results show that separate and mixed injections of dsHSP70A1, dsHsp70-2 and dsHsp70-3 significantly reduced expression levels of the target genes in G. daurica larvae. The super-cooling point (SCP) and the body fluid freezing point (FP) of the test larvae were determined after RNAi using the thermocouple method, and it was found that silencing the Hsp70 genes significantly increased the SCP and FP of G. daurica larvae, which validated the role of heat shock proteins in the cold resistance of G. daurica larvae. Our findings provide an important theoretical basis for further excavating the key genes and proteins in response to extremely cold environments and analyzing the molecular mechanism of cold adaptation in insects in harsh environments.
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Affiliation(s)
- Hongling Zhang
- College of Horticulture and Plant Protection, Inner Mongolia Agricultural University, Hohhot 010019, China; (H.Z.); (F.S.); (W.Z.); (Y.L.); (L.L.); (B.P.)
- Research Center for Grassland Entomology, Inner Mongolian Agricultural University, Hohhot 010019, China
| | - Feilong Sun
- College of Horticulture and Plant Protection, Inner Mongolia Agricultural University, Hohhot 010019, China; (H.Z.); (F.S.); (W.Z.); (Y.L.); (L.L.); (B.P.)
- Research Center for Grassland Entomology, Inner Mongolian Agricultural University, Hohhot 010019, China
| | - Wenbing Zhang
- College of Horticulture and Plant Protection, Inner Mongolia Agricultural University, Hohhot 010019, China; (H.Z.); (F.S.); (W.Z.); (Y.L.); (L.L.); (B.P.)
- Research Center for Grassland Entomology, Inner Mongolian Agricultural University, Hohhot 010019, China
| | - Xia Gao
- Key Laboratory of Grassland Resources, Ministry of Education, Hohhot 010010, China;
- College of Grassland, Resources and Environment, Inner Mongolia Agricultural University, Hohhot 010020, China
| | - Lei Du
- Inner Mongolia Academy of Agricultural & Animal Husbandry Sciences, Hohhot 010031, China; (L.D.); (X.Y.)
| | - Xiaopeng Yun
- Inner Mongolia Academy of Agricultural & Animal Husbandry Sciences, Hohhot 010031, China; (L.D.); (X.Y.)
| | - Yanyan Li
- College of Horticulture and Plant Protection, Inner Mongolia Agricultural University, Hohhot 010019, China; (H.Z.); (F.S.); (W.Z.); (Y.L.); (L.L.); (B.P.)
- Research Center for Grassland Entomology, Inner Mongolian Agricultural University, Hohhot 010019, China
| | - Ling Li
- College of Horticulture and Plant Protection, Inner Mongolia Agricultural University, Hohhot 010019, China; (H.Z.); (F.S.); (W.Z.); (Y.L.); (L.L.); (B.P.)
- Research Center for Grassland Entomology, Inner Mongolian Agricultural University, Hohhot 010019, China
| | - Baoping Pang
- College of Horticulture and Plant Protection, Inner Mongolia Agricultural University, Hohhot 010019, China; (H.Z.); (F.S.); (W.Z.); (Y.L.); (L.L.); (B.P.)
- Research Center for Grassland Entomology, Inner Mongolian Agricultural University, Hohhot 010019, China
| | - Yao Tan
- College of Horticulture and Plant Protection, Inner Mongolia Agricultural University, Hohhot 010019, China; (H.Z.); (F.S.); (W.Z.); (Y.L.); (L.L.); (B.P.)
- Research Center for Grassland Entomology, Inner Mongolian Agricultural University, Hohhot 010019, China
- Key Laboratory of Grassland Resources, Ministry of Education, Hohhot 010010, China;
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Wei X, Xu D, Liu Z, Liu Q, Zhuo Z. SMRT Sequencing Technology Was Used to Construct the Batocera horsfieldi (Hope) Transcriptome and Reveal Its Features. INSECTS 2023; 14:625. [PMID: 37504630 PMCID: PMC10380457 DOI: 10.3390/insects14070625] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2023] [Revised: 06/28/2023] [Accepted: 07/07/2023] [Indexed: 07/29/2023]
Abstract
Batocera horsfieldi (Hope) (Coleoptera: Cerambycidae) is an important forest pest in China that mainly infests timber and economic forests. This pest primarily causes plant tissue to necrotize, rot, and eventually die by feeding on the woody parts of tree trunks. To gain a deeper understanding of the genetic mechanism of B. horsfieldi, this study employed single-molecule real-time sequencing (SMRT) and Illumina RNA-seq technologies to conduct full-length transcriptome sequencing of the insect. Total RNA extracted from male and female adults was mixed and subjected to SMRT sequencing, generating a complete transcriptome. Transcriptome analysis, prediction of long non-coding RNA (lncRNA), coding sequences (CDs), analysis of simple sequence repeats (SSR), prediction of transcription factors, and functional annotation of transcripts were performed in this study. The collective 20,356,793 subreads (38.26 G, clean reads) were generated, including 432,091 circular consensus sequences and 395,851 full-length non-chimera reads. The full-length non-chimera reads (FLNC) were clustered and redundancies were removed, resulting in 39,912 consensus reads. SSR and ANGEL software v3.0 were used for predicting SSR and CDs. In addition, four tools were used for annotating 6058 lncRNAs, identifying 636 transcription factors. Furthermore, a total of 84,650 transcripts were functionally annotated in seven different databases. This is the first time that the full-length transcriptome of B. horsfieldi has been obtained using SMRT sequencing. This provides an important foundation for investigating the gene regulation underlying the interaction between B. horsfieldi and its host plants through gene editing in the future and provides a scientific basis for the prevention and control of B. horsfieldi.
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Affiliation(s)
- Xinju Wei
- College of Life Science, China West Normal University, Nanchong 637002, China
| | - Danping Xu
- College of Life Science, China West Normal University, Nanchong 637002, China
| | - Zhiqian Liu
- College of Life Science, China West Normal University, Nanchong 637002, China
| | - Quanwei Liu
- College of Life Science, China West Normal University, Nanchong 637002, China
| | - Zhihang Zhuo
- College of Life Science, China West Normal University, Nanchong 637002, China
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