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Roma L, Lorber T, Rau S, Barrett MT, Ercan C, Panebianco F, Piscuoglio S, Glatz K, Bubendorf L, Ruiz C. Tracking the Evolution of Cutaneous Melanoma by Multiparameter Flow Sorting and Genomic Profiling. Int J Mol Sci 2025; 26:1758. [PMID: 40004220 PMCID: PMC11855598 DOI: 10.3390/ijms26041758] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2025] [Revised: 02/14/2025] [Accepted: 02/17/2025] [Indexed: 02/27/2025] Open
Abstract
Intratumoral heterogeneity and clonal evolution are pivotal in the progression and metastasis of melanoma. However, when combined with variable tumor cellularity, intratumoral heterogeneity limits the sensitivity and accuracy of uncovering a cancer's clonal evolution. In this study, we combined fluorescence-activated cell sorting (FACS) with whole-exome sequencing (WES) to investigate the clonal composition and evolutionary patterns in seven melanoma biopsies obtained from three patients, each having both primary site and metastatic samples. We employed a multiparameter ploidy sorting approach to isolate tumor populations based on DNA ploidy and melanoma biomarkers (SOX10 or S100), enabling us to investigate clonal evolution with high resolution. Our approach increased the mean tumor purity from 70% (range 19-88%) in unsorted material to 91% (range 87-96%) post-sorting. Our findings revealed significant inter- and intratumor heterogeneity, with one patient exhibiting two genomically distinct clonal tumor populations within a single primary site biopsy, each giving rise to different metastases. Our findings highlight the critical role of intratumoral heterogeneity and clonal evolution in melanoma, especially when analyzing tumor trajectories. The unique combination of multiparameter FACS and WES provides a powerful method for identifying clonal populations and reconstructing clonal evolution. This study provides valuable insights into the clonal architecture of melanoma and lays the groundwork for future research with larger patient groups.
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Affiliation(s)
- Luca Roma
- Institute of Medical Genetics and Pathology, University Hospital Basel, University of Basel, CH-4031 Basel, Switzerland
| | - Thomas Lorber
- Institute of Medical Genetics and Pathology, University Hospital Basel, University of Basel, CH-4031 Basel, Switzerland
| | - Sabrina Rau
- Institute of Medical Genetics and Pathology, University Hospital Basel, University of Basel, CH-4031 Basel, Switzerland
| | - Michael T. Barrett
- Department of Research, Mayo Clinic in Arizona, Scottsdale, AZ 85259, USA
| | - Caner Ercan
- Institute of Medical Genetics and Pathology, University Hospital Basel, University of Basel, CH-4031 Basel, Switzerland
| | - Federica Panebianco
- Institute of Medical Genetics and Pathology, University Hospital Basel, University of Basel, CH-4031 Basel, Switzerland
| | | | - Katharina Glatz
- Institute of Medical Genetics and Pathology, University Hospital Basel, University of Basel, CH-4031 Basel, Switzerland
| | - Lukas Bubendorf
- Institute of Medical Genetics and Pathology, University Hospital Basel, University of Basel, CH-4031 Basel, Switzerland
| | - Christian Ruiz
- Institute of Medical Genetics and Pathology, University Hospital Basel, University of Basel, CH-4031 Basel, Switzerland
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Wang T, Chen M, Wang A, Zhang H. Case report: Long remission and survival following immunotherapy in a case of pulmonary pleomorphic carcinoma. Front Immunol 2024; 15:1464900. [PMID: 39620217 PMCID: PMC11604722 DOI: 10.3389/fimmu.2024.1464900] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2024] [Accepted: 10/29/2024] [Indexed: 12/19/2024] Open
Abstract
In 2020, we reported on a case involving a 68-year-old male patient with a rare instance of pulmonary pleomorphic carcinoma exhibiting high PD-L1 expression. The patient experienced significant therapeutic success with the use of pembrolizumab, achieving partial tumor remission. Following the publication of that report, the patient continued on pembrolizumab at a dose of 200 mg/dl for 27 cycles, subsequently transitioning to a combination of pembrolizumab and bevacizumab for eight cycles. Due to elevated blood pressure, the regimen was adjusted back to monotherapy with pembrolizumab. As of July 9, 2024, the patient remains alive with a satisfactory quality of life. This follow-up report, coupled with a review of the literature from 2021 to 2024 on pulmonary pleomorphic carcinoma and its immunotherapeutic approaches, aims to present new insights and innovative strategies for treating this rare form of cancer.
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Affiliation(s)
- Tongshan Wang
- Central Laboratory, Nanjing First Hospital, Nanjing Medical University, Nanjing, China
| | - Muyang Chen
- School of Pediatrics, Nanjing Medical University, Nanjing, Jiangsu, China
| | - Anpeng Wang
- Department of Oncology, First Affiliated Hospital of Nanjing Medical University, Nanjing, Jiangsu, China
| | - Hao Zhang
- Department of Oncology, First Affiliated Hospital of Nanjing Medical University, Nanjing, Jiangsu, China
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Zhou L, Li M, Li W. Suggestions for Improving the Comprehensive Characterization of Lung Pleomorphic Carcinoma. J Thorac Oncol 2024; 19:e37-e38. [PMID: 39242145 DOI: 10.1016/j.jtho.2024.05.374] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2024] [Accepted: 05/25/2024] [Indexed: 09/09/2024]
Affiliation(s)
- Lianwei Zhou
- School of Clinical Medicine, Jiamusi University, Jiamusi City, People's Republic of China
| | - Manling Li
- School of Clinical Medicine, Jiaying University, MeiZhou City, People's Republic of China
| | - Wenbo Li
- School of Clinical Medicine, Jiamusi University, Jiamusi City, People's Republic of China.
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Roma L, Bubendorf L. Suggestions for Improving the Comprehensive Characterization of Lung Pleomorphic Carcinoma. J Thorac Oncol 2024; 19:e38-e39. [PMID: 39242146 DOI: 10.1016/j.jtho.2024.06.016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2024] [Accepted: 06/17/2024] [Indexed: 09/09/2024]
Affiliation(s)
- Luca Roma
- Pathology, Institute of Medical Genetics and Pathology, University Hospital Basel, Basel, Switzerland
| | - Lukas Bubendorf
- Pathology, Institute of Medical Genetics and Pathology, University Hospital Basel, Basel, Switzerland.
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