Testing genetic determinism in rate of hoof growth in pigs using Bayes Factors

Claw Characteristics of Culled Sows from Three Farrow-to-Finish Greek Farms. Part 2: Mechanical Indices of Hoof Horn and Their Associations with Length Measurements and Lesion Scores

The objective of the present study was to investigate the mechanical indices of hoof horn and their association with length measurements and lesion score. The feet of 185 culled sows from three Greek farms (A: 57 sows; B: 64 sows; C: 64 sows) were used. A slice from the dorsal wall of each claw was used to assess by a three-point bending test the Young’s modulus, yield stress and aximum stress values. The available data from a companion study (part 1) on the length measurements and lesion scores of the claws were used to reveal possible relationships. The Young’s modulus values were significantly higher (p < 0.001 or p < 0.01 depending on location of claw) in the sows of farm C compared to those in sows of farms A and B and in sows of farm B compared to those in the sows of farm A. Yield and maximum stress values were significantly higher (p < 0.05 or p < 0.001 depending on the location of the claw) in the sows of farm C compared to those in the sows of farm A and in the sows of farm B compared to those in the sows of farm A. An increase in heel-sole length decreased all mechanical indices. Young’s modulus and yield stress were associated with wall lesion severity while maximum stress with wall and heel lesion severity. Overall, we conclude that mechanical efficiency deteriorates as length and lesion score increases.

Claw Characteristics of Culled Sows from Three Farrow-to-Finish Greek Farms. Part 1: Claw Length Measurements, Lesion Scores and Their Association

The aim of the study was to investigate variations in lengths and lesions in claws of culled sows and to evaluate their association. All four feet of 185 sows from three Greek farrow-to-finish farms (Farm A: 57 sows; Farm B: 64 sows; Farm C: 64 sows) were examined for lesions and their lengths were measured. All claw lengths were lower in sows of farm C compared to those from sows of B and A. Claw lengths in sows of farm B were lower compared to those from A for all lateral toes of front feet and for all medial and four out of three lateral toes of rear feet. Sum of length measurements of the main toes of the front feet (SLF) associated with lesions on sole, white line and heel of front feet, while sum of length measurements of the main toes of the rear feet (SLR) associated with all lesions of the rear feet. The lengths of the main toes were correlated with the length of dew claws on front and rear feet. Overall, sows’ claw lesion severity and claw lengths may differ between farms and frequency of lesions is higher in longer claws.

Large-Scale Phenotyping of Livestock Welfare in Commercial Production Systems: A New Frontier in Animal Breeding

Genomic breeding programs have been paramount in improving the rates of genetic progress of productive efficiency traits in livestock. Such improvement has been accompanied by the intensification of production systems, use of a wider range of precision technologies in routine management practices, and high-throughput phenotyping. Simultaneously, a greater public awareness of animal welfare has influenced livestock producers to place more emphasis on welfare relative to production traits. Therefore, management practices and breeding technologies in livestock have been developed in recent years to enhance animal welfare. In particular, genomic selection can be used to improve livestock social behavior, resilience to disease and other stress factors, and ease habituation to production system changes. The main requirements for including novel behavioral and welfare traits in genomic breeding schemes are: (1) to identify traits that represent the biological mechanisms of the industry breeding goals; (2) the availability of individual phenotypic records measured on a large number of animals (ideally with genomic information); (3) the derived traits are heritable, biologically meaningful, repeatable, and (ideally) not highly correlated with other traits already included in the selection indexes; and (4) genomic information is available for a large number of individuals (or genetically close individuals) with phenotypic records. In this review, we (1) describe a potential route for development of novel welfare indicator traits (using ideal phenotypes) for both genetic and genomic selection schemes; (2) summarize key indicator variables of livestock behavior and welfare, including a detailed assessment of thermal stress in livestock; (3) describe the primary statistical and bioinformatic methods available for large-scale data analyses of animal welfare; and (4) identify major advancements, challenges, and opportunities to generate high-throughput and large-scale datasets to enable genetic and genomic selection for improved welfare in livestock. A wide variety of novel welfare indicator traits can be derived from information captured by modern technology such as sensors, automatic feeding systems, milking robots, activity monitors, video cameras, and indirect biomarkers at the cellular and physiological levels. The development of novel traits coupled with genomic selection schemes for improved welfare in livestock can be feasible and optimized based on recently developed (or developing) technologies. Efficient implementation of genetic and genomic selection for improved animal welfare also requires the integration of a multitude of scientific fields such as cell and molecular biology, neuroscience, immunology, stress physiology, computer science, engineering, quantitative genomics, and bioinformatics.

Effect of rubber flooring on group-housed sows' gait and claw and skin lesions

This study evaluated the influence of floor type on sow welfare in terms of lameness, claw lesions, and skin lesions. In a 2 × 3 factorial design, we have investigated the effect of rubber coverings on concrete floors and the effect of 3 levels of dietary zinc supplementation on locomotion and claw and skin lesions in group-housed sows. Six groups of 21 ± 4 hybrid sows were monitored during 3 successive reproductive cycles. The sows were group housed from d 28 after insemination (d 0) until 1 wk before expected farrowing date (d 108) in pens with either exposed concrete floors or concrete floors covered with rubber in part of the lying area and the fully slatted area. During each reproductive cycle, locomotion and skin lesions were assessed 4 times (d 28, 50, 108, and 140) and claw lesions were assessed twice (d 50 and 140). Results are given as least squares means ± SE. Locomotion and claw scores were given in millimeters, on analog scales of 150 and 160 mm, respectively. Here, we report on the effect of floor type, which did not interact with dietary zinc concentration ( > 0.10 for all variables). At move to group (d 28) and mid gestation (d 50), no differences between floor treatments were seen in locomotion ( > 0.10). At the end of gestation (d 108), sows housed on rubber flooring scored 9.9 ± 4.1 mm better on gait ( < 0.001). Regarding claw disorders, both parameters "heel overgrowth and erosion" (difference of 4.6 ± 1.8 mm; = 0.01) and "heel-sole crack" (difference of 3.1 ± 1.5 mm; = 0.04) scores were better for sows on rubber flooring at mid gestation (d 50). However, sows on rubber flooring scored worse for "vertical cracks in the wall horn" (difference of 3.4 ± 1.7 mm; = 0.04). At the end of lactation (d 140), both "white line" (difference of 2.9 ± 1 mm; = 0.02) and "claw length" (difference of 4.7 ± 1.4 mm; < 0.001) had better scores on rubber flooring. No differences for skin lesions were observed between floor treatments. The improved scores for gait toward the end of gestation and some types of claw disorders at mid gestation suggest that rubber flooring in group housing has a beneficial effect on the overall leg health of sows. The documented increase in vertical cracks in the wall horn at d 50 requires further investigation.

Competing risk analyses of longevity in Duroc sows with a special emphasis on leg conformation

A competing risk approach was used to evaluate the influence of several factors on culling risk for 587 Duroc sows. Three different analyses were performed according to whether sow failure was due to death during productive life (DE) or to one of two causes for voluntary culling: low productivity (LP) and low fertility (LF). Sow survival was analyzed by the Cox model. Year at first farrowing (batch effect) significantly affected sow survival in all three analyses (P < 0.05 for DE and P < 0.001 for LP and LF) whereas farm of origin accounted for relevant variation in the LP and LF analyses. LP culling increased with backfat thickness of more than 19 mm at the end of the growth period (P < 0.05), bad teat condition (P < 0.05) and reduced piglets born alive (P < 0.001). For the LF competing risk analysis, culling increased with age at first farrowing (P < 0.1). Special emphasis was placed on the influence of leg and teat conformation on sow survivability, although they did not affect sow failure due to DE (P > 0.1). The overall leg-conformation score significantly influenced sow longevity in LP (P < 0.001) and LF competing risk analyses (P < 0.001), showing a higher hazard ratio (HR) for poorly conformed sows (1.013 and 4.366, respectively) than for well-conformed sows (0.342 and 0.246, respectively). Survival decreased with the presence of abnormal hoof growth in LP and LF analyses (HR = 3.372 and 6.002, respectively; P < 0.001) and bumps or injuries to legs (HR = 4.172 and 5.839, respectively; P < 0.01). Plantigradism reduced sow survival in the LP analysis (P < 0.05), while sickle-hooked leg (P < 0.05) impaired sow survival in the fertility-specific analysis. Estimates of heritability for longevity related to LP culling ranged from 0.008 to 0.024 depending on the estimation procedure, whereas heritability values increased to between 0.017 and 0.083 in LF analysis. These analyses highlighted substantial discrepancies in the sources of variation and genetic background of sow longevity depending on the cause of failure. The estimated heritabilities suggested that direct genetic improvement for sow longevity seemed feasible, although only a small genetic progress was expected.

Genetic background and phenotypic characterization over two farrowings of leg conformation defects in Landrace and Large White sows

A Bayesian threshold animal model was applied to evaluate the prevalence over 2 farrowings and genetic background of overall leg conformation score and the presence or absence of 6 specific leg defects (abnormal hoof growth, splay footed, plantigradism, straight pasterns, sickle-hocked legs, and the presence of swelling or injuries) in purebred Landrace and Large White sows. Data sets contained phenotypic records from 2,477 and 1,550 Landrace and Large White females, respectively, at the end of the growing period. Leg conformation data from first and second farrowings were available for 223 and 191 Landrace sows and 213 and 193 Large White sows, respectively. Overall leg conformation deteriorated with age, with statistically relevant differences between females at the end of the growing period, first farrowing (FF), and second farrowing (SF). In a similar way, the prevalence of the 6 specific leg defects increased between the end of the growing period and FF (with the exception of straight pasterns in the Landrace population). Differences between FF and second farrowing were statistically relevant for hoof growth (highest posterior density regions at 95% did not overlap), plantigradism, sickle-hocked legs, and overall leg conformation score in Landrace and for sickle-hocked leg and overall leg conformation score in Large White. The statistical relevance of the genetic background was tested through the Bayes factor (BF) between the model with the additive genetic component and the model with 0 heritability (nonheritable). Heritability (h(2)) was discarded (BF < 1) for sickle-hocked leg in both breeds, whereas decisive evidence (BF > 100) of genetic background was obtained for overall leg conformation score in Landrace and Large White sows (h(2) = 0.27 and 0.38, respectively), hoof growth in both breeds (h(2) = 0.22 and 0.26, respectively), and plantigradism (h(2) = 0.34) and the presence of swelling or injuries in Landrace (h(2) = 0.27). Note that a BF > 100 implies that the model with infinitesimal genetic effects was more than 100 times more suitable than the model without genetic effects, a conclusive estimate within the Bayesian framework. The remaining traits (splay footed and straight pasterns) registered BF values ranging from 11.6 to 35.1 and h(2) values ranging from 0.09 to 0.19. These results indicated a moderate genetic determinism for leg conformation in Landrace and Large White sows.

Effect of leg conformation on survivability of Duroc, Landrace, and Large White sows

Sow longevity influences farm economy and can be considered an important indicator of animal welfare. Body features such as leg conformation can play a key role in sow longevity, although little is known about its effect on culling decisions. Within this context, longevity data from 587 Duroc, 239 Landrace, and 217 Large White sows were analyzed with special emphasis on the effect of leg conformation. Sow longevity was analyzed twice for each breed, testing the effect of a subjective overall score for leg conformation, or the presence or absence of 6 specific leg conformation defects. Each preliminary model also included a teat conformation score with 3 levels, farm or origin, backfat thickness at 6 mo of age, and 2 continuous sources of variation, namely the age at the first farrowing and the number of piglets born alive at each farrowing. Overall leg conformation score influenced (P < 0.01) sow longevity in Duroc, Landrace, and Large White sows, with a greater hazard ratio (HR) for poorly conformed sows (1.56, 2.16, and 1.79, respectively) than for well-conformed sows (0.32, 0.66, and 0.68, respectively). Abnormal hoof growth reduced survivability in Duroc (HR = 2.78; P < 0.001) and Landrace sows (HR = 1.88; P < 0.01); the presence of splayed feet (P < 0.05) or bumps and injuries (P < 0.001) increased the risk of culling in Duroc sows (HR = 2.08 and 3.57, respectively), whereas the incidence of straight pastern increased the HR in Large White sows (HR = 2.49; P < 0.01). In all 3 breeds, longevity decreased for plantigrade sows, with a greater HR in Duroc (HR = 3.38; P < 0.001) than in Landrace (HR = 1.53; P < 0.10) and Large White sows (HR = 1.73; P < 0.05). Teat conformation did not influence sow longevity (P > 0.10). Estimates of heritability for longevity in Duroc sows ranged from 0.05 to 0.07 depending on the algorithm applied. Leg conformation had a substantial effect on sow longevity, where an accurate removal of poorly leg-conformed candidate gilts before first mating could improve sow survival and reduce culling costs. These moderate estimates of heritability indicated that survivability of Duroc sows could be genetically improved by direct selection for leg conformation.