1
|
Zinßmeister D, Leibovitch M, Natan E, Turjeman S, Koren O, Travisano M, Vortman Y, Baselga-Cervera B. Detecting life by behavior, the overlooked sensitivity of behavioral assays. Sci Rep 2024; 14:18904. [PMID: 39143360 PMCID: PMC11324786 DOI: 10.1038/s41598-024-69942-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Accepted: 08/12/2024] [Indexed: 08/16/2024] Open
Abstract
Detecting life has driven research and exploration for centuries, but recent attempts to compile and generate a framework that summarizes life features, aimed to develop strategies for life detection missions beyond planet Earth, have disregarded a key life feature: behavior. Yet, some behaviors such as biomineralization or motility have occasionally been proposed as biosignatures to detect life. Here, we capitalize on a specific taxis' motility behavior, magnetotaxis, to experimentally provide insights in support of behavior as an unambiguous, sensitive biosignature, and magnetic forces as a prescreening option. Using a magnetotactic bacterial species, Magnetospirillum magneticum, we conducted a lab sensitivity experiment comparing PCR with the hanging drop behavioral assay, using a dilution series. The hanging drop behavioral assay visually shows the motility of MTB toward magnetic poles. Our findings reveal that the behavioral assay exhibits higher sensitivity in the detection of M. magneticum when compared to the established PCR protocol. While both methods present similar detection sensitivities at high concentrations, at ≥ 10-7 fold dilutions, the behavioral method proved more sensitive. The behavioral method can detect bacteria even when samples are diluted at 10-9. Comparable results were obtained with environmental samples from the Hula Valley. We propose behavioral cues as valuable biosignatures in the ongoing efforts of life detection in unexplored aquatic habitats on Earth and to stimulate and support discussions about how to detect extant life beyond Earth. Generic and robust behavioral assays can represent a methodological revolution.
Collapse
Affiliation(s)
- Daniela Zinßmeister
- Hula Research Center, Department of Animal Sciences, Tel-Hai Academic College, Tel Hai, Israel
| | - Moshe Leibovitch
- Hula Research Center, Department of Biotechnology, Tel-Hai Academic College, Tel Hai, Israel
| | | | - Sondra Turjeman
- Azrieli Faculty of Medicine, Bar-Ilan University, Safed, Israel
| | - Omry Koren
- Azrieli Faculty of Medicine, Bar-Ilan University, Safed, Israel
| | - Michael Travisano
- Department of Ecology, Evolution and Behavior, University of Minnesota, St Paul, MN, USA
- Minnesota Center for Philosophy of Science, University of Minnesota, Minneapolis, MN, USA
- The BioTechnology Institute, University of Minnesota, St Paul, MN, USA
| | - Yoni Vortman
- Hula Research Center, Department of Animal Sciences, Tel-Hai Academic College, Tel Hai, Israel
- MIGAL-Galilee Research Institute, 11016, Kiryat Shmona, Israel
| | - Beatriz Baselga-Cervera
- Department of Ecology, Evolution and Behavior, University of Minnesota, St Paul, MN, USA.
- Minnesota Center for Philosophy of Science, University of Minnesota, Minneapolis, MN, USA.
| |
Collapse
|
2
|
Enya K, Yamagishi A, Kobayashi K, Yoshimura Y, Tasker EJ. A Comparative Study of Methods for Detecting Extraterrestrial Life in Exploration Missions to Mars and the Solar System II: Targeted Characteristics, Detection Techniques, and Their Combination for Survey, Detection, and Analysis. ASTROBIOLOGY 2023; 23:1099-1117. [PMID: 37768711 PMCID: PMC10616949 DOI: 10.1089/ast.2022.0148] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2022] [Accepted: 08/15/2023] [Indexed: 09/29/2023]
Abstract
We present a comparative study of the methods used in the search for extraterrestrial microorganism life, including a summary table where different life-detection techniques can be easily compared as an aid to mission and instrument design aimed at life detection. This is an extension of previous study, where detection techniques for a series of target characteristics and molecules that could constitute a positive life detection were evaluated. This comparison has been extended with a particular consideration to sources of false positives, the causes of negative detection, the results of detection techniques when presented regarding terrestrial life, and additional science objectives that could be achieved outside the primary aim of detecting life. These additions address both the scientific and programmatic side of exploration mission design, where a successful proposal must demonstrate probable outcomes and be able to return valuable results even if no life is found. The applicability of the life detection techniques is considered for Earth life, Earth-independent life (life emerging independently from that on Earth,) and Earth-kin life (sharing a common ancestor with life on Earth), and techniques effective in detecting Earth life should also be useful in the detection of Earth-kin life. However, their applicability is not guaranteed for Earth-independent life. As found in our previous study, there exists no realistic single detection method that can conclusively determine the discovery of extraterrestrial life, and no method is superior to all others. In this study, we further consider combinations of detection techniques and identify imaging as a valuable addition to molecule detection methods, even in cases where there is insufficient resolution to observe the detailed morphology of a microbial cell. The search for extraterrestrial life is further divided into a survey-and-detection and analysis-and-conclusion step. These steps benefit from different detection techniques, but imaging is necessary for both parts.
Collapse
Affiliation(s)
- Keigo Enya
- Department of Solar System Sciences, Institute of Space and Astronautical Science, Japan Aerospace Exploration Agency, Sagamihara, Japan
- Space and Astronautical Science, Graduate Institute for Advanced Studies, SOKENDAI, Hayama, Japan
| | - Akihiko Yamagishi
- Department of Applied Life Science, School of Life Science, Tokyo University of Pharmacy and Life Sciences, Tokyo, Japan
| | - Kensei Kobayashi
- Department of Chemistry, Yokohama National University, Yokohama, Japan
- Department of Earth and Planetary Science, Tokyo Institute of Technology, Tokyo, Japan
| | | | - Elizabeth J. Tasker
- Department of Solar System Sciences, Institute of Space and Astronautical Science, Japan Aerospace Exploration Agency, Sagamihara, Japan
- Space and Astronautical Science, Graduate Institute for Advanced Studies, SOKENDAI, Hayama, Japan
| |
Collapse
|
3
|
Georgiou CD, McKay C, Reymond JL. Organic Catalytic Activity as a Method for Agnostic Life Detection. ASTROBIOLOGY 2023; 23:1118-1127. [PMID: 37523279 DOI: 10.1089/ast.2023.0022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/02/2023]
Abstract
An ideal life detection instrument would have high sensitivity but be insensitive to abiotic processes and would be capable of detecting life with alternate molecular structures. In this study, we propose that catalytic activity can be the basis of a nearly ideal life detection instrument. There are several advantages to catalysis as an agnostic life detection method. Demonstrating catalysis does not necessarily require culturing/growing the alien life and in fact may persist even in dead biomass for some time, and the amplification by catalysis is large even by minute amounts of catalysts and, hence, can be readily detected against abiotic background rates. In specific, we propose a hydrolytic catalysis detection instrument that could detect activity in samples of extraterrestrial organic material from unknown life. The instrument uses chromogenic assay-based detection of various hydrolytic catalytic activities, which are matched to corresponding artificial substrates having the same, chromogenic (preferably fluorescent) upon release, group; D- and L-enantiomers of these substrates can be used to also answer the question whether unknown life is chiral. Since catalysis is a time-proportional product-concentration amplification process, hydrolytic catalytic activity can be measured on a sample of even a minute size, and with instruments based on, for example, optofluidic chip technology.
Collapse
Affiliation(s)
| | | | - Jean-Louis Reymond
- Department of Chemistry, Biochemistry and Pharmaceutical Sciences, University of Bern, Bern, Switzerland
| |
Collapse
|
4
|
Li Y, Collins DA, Grintzalis K. A Simple Biochemical Method for the Detection of Proteins as Biomarkers of Life on Martian Soil Simulants and the Impact of UV Radiation. Life (Basel) 2023; 13:life13051150. [PMID: 37240795 DOI: 10.3390/life13051150] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2023] [Revised: 04/26/2023] [Accepted: 05/08/2023] [Indexed: 05/28/2023] Open
Abstract
The search for life on other planets relies on the detection of biosignatures of life. Many macromolecules have been suggested as potential targets, among which are proteins that are considered vital components of life due to their essential roles in forming cellular structures, facilitating cellular communication and signaling, and catalyzing metabolic reactions. In this context, accurate quantification of protein signatures in soil would be advantageous, and while several proposed methods exist, which are limited by their sensitivity and specificity, their applicability needs further testing and validation. To this aim, we optimized a Bradford-based assay with high sensitivity and reproducibility and a simple protocol to quantify protein extracted from a Martian soil simulant. Methods for protein spiking, extraction, and recovery were optimized, using protein standards and bacterial proteins as representative models. The proposed method achieved high sensitivity and reproducibility. Taking into account that life remains could exist on the surface of Mars, which is subjected to UV radiation, a simulation of UV exposure was performed on a spiked soil simulant. UV radiation degraded the protein spike, thus highlighting the importance of searching for the remaining signal from degraded proteins. Finally, the applicability of the method was explored in relation to the storage of the reagent which was stable even up to 12 months, thus making its application possible for future planetary exploration missions.
Collapse
Affiliation(s)
- Yongda Li
- School of Biotechnology, Dublin City University, D09 Y5NO Dublin, Ireland
| | - David A Collins
- School of Biotechnology, Dublin City University, D09 Y5NO Dublin, Ireland
| | | |
Collapse
|
5
|
De Mol ML. Astrobiology in Space: A Comprehensive Look at the Solar System. Life (Basel) 2023; 13:life13030675. [PMID: 36983831 PMCID: PMC10054531 DOI: 10.3390/life13030675] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2023] [Revised: 02/18/2023] [Accepted: 03/01/2023] [Indexed: 03/06/2023] Open
Abstract
The field of astrobiology aims to understand the origin of life on Earth and searches for evidence of life beyond our planet. Although there is agreement on some of the requirements for life on Earth, the exact process by which life emerged from prebiotic conditions is still uncertain, leading to various theories. In order to expand our knowledge of life and our place in the universe, scientists look for signs of life through the use of biosignatures, observations that suggest the presence of past or present life. These biosignatures often require up-close investigation by orbiters and landers, which have been employed in various space missions. Mars, because of its proximity and Earth-like environment, has received the most attention and has been explored using (sub)surface sampling and analysis. Despite its inhospitable surface conditions, Venus has also been the subject of space missions due to the presence of potentially habitable conditions in its atmosphere. In addition, the discovery of habitable environments on icy moons has sparked interest in further study. This article provides an overview of the origin of life on Earth and the astrobiology studies carried out by orbiters and landers.
Collapse
Affiliation(s)
- Maarten L De Mol
- Centre for Industrial Biotechnology and Biocatalysis (InBio.be), Department of Biotechnology, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, 9000 Ghent, Belgium
| |
Collapse
|