Paternity assessment in free-ranging wild boar (Sus scrofa) – Are littermates full-sibs?

A simulation-based evaluation of methods for estimating census population size of terrestrial game species from genetically-identified parent-offspring pairs

Estimates of wildlife population size are critical for conservation and management, but accurate estimates are difficult to obtain for many species. Several methods have recently been developed that estimate abundance using kinship relationships observed in genetic samples, particularly parent-offspring pairs. While these methods are similar to traditional Capture-Mark-Recapture, they do not need physical recapture, as individuals are considered recaptured if a sample contains one or more close relatives. This makes methods based on genetically-identified parent-offspring pairs particularly interesting for species for which releasing marked animals back into the population is not desirable or not possible (e.g., harvested fish or game species). However, while these methods have successfully been applied in commercially important fish species, in the absence of life-history data, they are making several assumptions unlikely to be met for harvested terrestrial species. They assume that a sample contains only one generation of parents and one generation of juveniles of the year, while more than two generations can coexist in the hunting bags of long-lived species, or that the sampling probability is the same for each individual, an assumption that is violated when fecundity and/or survival depend on sex or other individual traits. In order to assess the usefulness of kin-based methods to estimate population sizes of terrestrial game species, we simulated population pedigrees of two different species with contrasting demographic strategies (wild boar and red deer), applied four different methods and compared the accuracy and precision of their estimates. We also performed a sensitivity analysis, simulating population pedigrees with varying fecundity characteristics and various levels of harvesting to identify optimal conditions of applicability of each method. We showed that all these methods reached the required levels of accuracy and precision to be effective in wildlife management under simulated circumstances (i.e., for species within a given range of fecundity and for a given range of sampling intensity), while being robust to fecundity variation. Despite the potential usefulness of the methods for terrestrial game species, care is needed as several biases linked to hunting practices still need to be investigated (e.g., when hunting bags are biased toward a particular group of individuals).

Sexual size dimorphism and sexual selection in artiodactyls

Sexual size dimorphism is biased toward males in most mammalian species. The most common explanation is precopulatory intramale sexual selection. Large males win fights and mate more frequently. In artiodactyls, previous tests of this hypothesis consisted of interspecific correlations of sexual dimorphism with group size as a surrogate for the intensity of sexual selection (Is). However, group size is not a proper measure of sexual selection for several reasons as is largely recognized in other mammalian taxa. I conducted an interspecific test on the role of sexual selection in the evolution of sexual dimorphism using the variance in genetic paternity as a proxy for the Is. I reviewed the literature and found 17 studies that allowed estimating Is= V/(W2), where V and W are the variance and mean number of offspring per male, respectively. A phylogenetic generalized least squares analysis indicated that dimorphism (Wm/Wf) showed a significant positive regression with the intensity of sexual selection but not group size (multiple r2= 0.40; F3,17= 12.78, P = 0.002). This result suggests that sexual selection may have played a role in the evolution of sexual size dimorphism in Artiodactyla. An alternative hypothesis based on natural selection is discussed.

Reproductive characteristics of wild boar males (Sus scrofa) under different environmental conditions

The wild boar population has been on a permanent increase over the last decades, causing conflicts with the requirements of modern human society. Existing effort to stabilize wild boar numbers generally fails with one of the causes being the high reproductive potential of wild boar. The aim of this study was to assess the onset of sexual maturity in wild boar males with regard to age, physical frame and environmental conditions on the basis of testicle development and sperm production. This study assessed the dimensions of gonads and the occurrence of sperm in boars caught during common hunts. Environmental conditions were found as an important factor for growth and sexual maturity of wild boar males. The body weight was a more important factor for sperm production than the age of young wild boar males. The weight threshold for sperm production in the testes was 29 kg of live weight, which corresponds to 6 months of age on average. This study has proven that environmental conditions are a significant factor affecting the physical development of male wild boars, more specifically the growth rate of their body frames and the onset of sexual maturity. In a better quality environment boars grow faster and enter puberty at an earlier age. Poor food supply and/or high hunting pressure result in slower body and testicular growth, as well as the production of sperm at a later age (approx. 2-3 months later).

Cooperation improves the access of wild boars (Sus scrofa) to food sources

Wild boar is a highly polycotous ungulate species, characterized by a complex and dynamical social organization based on the maintenance of long-term bonds between mother and daughters. The roots of this social organization have to be researched at the individual level, considering adaptations that improve fitness in hostile environments. We used information collected by camera-traps at artificial feeding sites, in two contrasting environments in Bulgaria (mountain habitat) and Italy (sub-Mediterranean habitat). We recorded 417 and 885 distinct groups on 7 and 11 foraging sites in Bulgaria and Italy, respectively. We computed (controlling for time range, study area and supplementary feeding site) an index of effective foraging time of the different social groups. We observed a positive and significant effect of the number of conspecifics of the same social group on the effective foraging time. The impact of the other social classes on effective foraging time is also positive, and males, yearlings, and juveniles benefited more from the presence of other social classes, while females were less affected. The access of the different social groups to foraging sites is not random. Males and yearlings play producers (i.e., search for food) and are prone to attend foraging sites before adult females and subadults, so attaining a larger foraging efficiency with respect to a situation where other groups are already present on the feeding site. Wild boars exhibit a more complex social organisation than previously believed, where cooperation prevails largely on competition. A rough division of labour is also present: yearlings, males, and juveniles use to play producers and assume a significant amount of risk determined by the presence of predators or hunters.

Multiple paternity in domestic pigs under equally probable natural matings – a case study in the endangered Gochu Asturcelta pig breed

Abstract. Here we provide evidence of multiple paternities in naturally mated sows under conditions ensuring that (a) sows had the same probability of being mated by any of the available boars and (b) no differences in hybrid vigour existed. Total DNA was obtained from 19 Gochu Asturcelta piglets from three different sows, each with the same chance of natural mating with two different boars. A set of 20 microsatellites were typed on all the individuals. The program CERVUS was used to asses the informative ability of the microsatellite set and to perform paternity assignment. Allelic frequencies at population level were obtained using a total of 141 Gochu Asturcelta individuals. Offspring were always assigned to a candidate boar with high statistical confidence. All litters had different parents. Our results show that multiple paternities are possible in domestic pigs under natural mating. Furthermore, the current study can be useful to further understand the mating system of the wild boar.

Males and females contribute unequally to offspring genetic diversity in the polygynandrous mating system of wild boar

The maintenance of genetic diversity across generations depends on both the number of reproducing males and females. Variance in reproductive success, multiple paternity and litter size can all affect the relative contributions of male and female parents to genetic variation of progeny. The mating system of the wild boar (Sus scrofa) has been described as polygynous, although evidence of multiple paternity in litters has been found. Using 14 microsatellite markers, we evaluated the contribution of males and females to genetic variation in the next generation in independent wild boar populations from the Iberian Peninsula and Hungary. Genetic contributions of males and females were obtained by distinguishing the paternal and maternal genetic component inherited by the progeny. We found that the paternally inherited genetic component of progeny was more diverse than the maternally inherited component. Simulations showed that this finding might be due to a sampling bias. However, after controlling for the bias by fitting both the genetic diversity in the adult population and the number of reproductive individuals in the models, paternally inherited genotypes remained more diverse than those inherited maternally. Our results suggest new insights into how promiscuous mating systems can help maintain genetic variation.

Microsatellite markers for identification and parentage analysis in the European wild boar (Sus scrofa)

BACKGROUND

The wild boar (Sus scrofa) is among the most widespread mammal species throughout the old world. Presently, studies concerning microsatellites in domestic pigs and wild boars have been carried out in order to investigate domestication, social behavior and general diversity patterns among either populations or breeds. The purpose of the current study is to develop a robust set of microsatellites markers for parentage analyses and individual identification.

FINDINGS

A set of 14 previously reported microsatellites markers have been optimized and tested in three populations from Hungary, Portugal and Spain, in a total of 167 samples. The results indicate high probabilities of exclusion (0.99999), low probability of identity (2.0E(-13) - 2.5E(-9)) and a parentage assignment of 100%.

CONCLUSIONS

Our results demonstrate that this set of markers is a useful and efficient tool for the individual identification and parentage assignment in wild boars.

Mate choice and the genetic basis for colour variation in a polymorphic dart frog: inferences from a wild pedigree

Understanding how reproductive barriers evolve during speciation remains an important question in evolution. Divergence in mating preferences may be a common first step in this process. The striking colour pattern diversity of strawberry dart frog (Dendrobates pumilio) populations has likely been shaped by sexual selection. Previous laboratory studies have shown that females attend to male coloration and prefer to court with males of their own colour, suggesting that divergent morphs may be reproductively isolated. To test this hypothesis, we used molecular data to estimate pedigree relationships from a polymorphic population. Whereas in the laboratory both red and yellow females preferred to court with males of their own phenotype, our pedigree shows a pattern of assortative mating only for red females. In the wild, yellow females appear to be less choosy about their mates, perhaps because they incur higher costs associated with searching than females of the more common red phenotype. We also used our pedigree to investigate the genetic basis for colour-pattern variation. The phenotype frequencies we observed were consistent with those expected if dorsal background coloration is controlled by a single locus, with complete dominance of red over yellow. Our results not only help clarify the role of sexual selection in reducing gene flow, but also shed light on the mechanisms underlying colour-pattern variation among sympatric colour morphs. The difference we observed between mating preferences measured under laboratory conditions and the pattern of mate choice observed in the wild highlight the importance of field studies for understanding behavioural reproductive isolation.

Preferential sexual transmission of pseudorabies virus in feral swine populations may not account for observed seroprevalence in the USA

This paper compares the behavior of two competing models for the transmission of pseudorabies virus in feral swine in the USA. In first model, horizontal (non-sexual) density dependent transmission is the only transmission modality. In the second model, the only transmission modality is sexual transmission between mature males and females. The comparison of model behavior was carried out to test the hypothesis that preferential sexual transmission of PRV in feral swine can account for the seroprevalence observed in the field. The observed range of seroprevalence of PRV in mature feral swine in the USA is consistent with a preferential sexual transmission only if the feral swine mating system is a random mating system or a polygynous system in which there is a relatively large rate of acquisition of new mates. The observed range of seroprevalence of PRV in mature feral swine in the USA is not consistent with a preferential sexual transmission if there is mate guarding. This is important because the National Pseudorabies Surveillance Plan deems monitoring the risk of PRV introduction from feral swine to be a "minor objective" both in terms of the scope of the plan and with respect to the resources allocated. The rationale for this statement was derived from experimental studies, which suggested that the PRV indigenous to feral swine in the USA is preferentially sexually transmitted.

The evolution of heterochiasmy: the role of sexual selection and sperm competition in determining sex-specific recombination rates in eutherian mammals

Early karyotypic work revealed that female and male recombination rates in many species show pronounced differences, and this pattern of heterochiasmy has also been observed in modern linkage mapping studies. Several hypotheses to explain this phenomenon have been offered, ranging from strictly biological mechanisms related to the gametic differences between the sexes, to more evolutionary models based on sexually antagonistic selection. However, despite the long history of interest in heterochiasmy, empirical data has failed to support any theory or pattern consistently. Here I test two alternative evolutionary hypotheses regarding heterochiasmy across the eutherian mammals, and show that sexual dimorphism, but not sperm competition, is strongly correlated with recombination rate, suggesting that sexual antagonism is an important influence. However, the observed relationship between heterochiasmy and sexual dimorphism runs counter to theoretical predictions, with male recombination higher in species with high levels of sexual dimorphism. This may be the response to male-biased dispersal, which, rather than the static male fitness landscape envisioned in the models tested here, could radically shift optimal male fitness parameters among generations.

Promiscuous mating in feral pigs (Sus scrofa) from Texas, USA

Context Feral pigs represent a significant threat to agriculture and ecosystems and are disease reservoirs for pathogens affecting humans, livestock and other wildlife. Information on the behavioural ecology of feral pigs might increase the efficiency and effectiveness of management strategies. Aims We assessed the frequency of promiscuous mating in relation to oestrous synchrony in feral pigs from southern Texas, USA, an agroecosystem with a widespread and well established population of feral pigs. An association between multiple paternity of single litters and synchrony of oestrous may indicate alternative mating strategies, such as mate-guarding. Methods We collected gravid sows at nine sites in southern Texas during 2005–07. We used a panel of DNA microsatellite markers to estimate frequency of multiple paternity and the distribution of male mating among litters of feral pigs. Conception dates were determined by fitting average fetal crown–rump measurements within litters to expected fetal development relative to gestation time. Key results We found evidence of multiple paternity in 21 of 64 litters (33%) from seven of nine sites sampled. Synchrony of oestrous did not influence promiscuous mating, as we found multiple paternity at sites with synchronous and asynchronous oestrous. Males sired from 8 to 11 offspring at three sites where >10 litters were sampled. Mean litter size (5.4) was less than the best-fit value for the number of offspring, indicating that some males sired offspring with ≥ 2 females. Key conclusions Feral pigs in Texas appear to be promiscuous under a range of demographic conditions, unlike wild boar and feral pigs in other regions. The ecological and behavioural factors affecting multiple paternity are not clear, but may include male–male competition, harassment avoidance, genetic benefits for offspring, response to macro-habitat conditions, or selection. Implications A high incidence of sexual contact among individuals may increase the opportunity for diseases transmitted by oral or venereal routes, such as swine brucellosis and pseudorabies. In addition, fertility-control methods targeting males only are likely to be inefficient if female promiscuity is high; methods targeting females or both sexes jointly may be more effective.