SEMICE: An unbiased and powerful monitoring protocol for small mammals in the Mediterranean Region

Is bedding material a more effective thermal insulator than trap cover for small mammal trapping? A field experiment

Live trapping is a key technique for conducting ecological studies on small mammals. All-metal live traps are popular in monitoring schemes owing to their tested performance, lightweight design (aluminium) and foldability. However, capture represents a stressful situation for small mammals, particularly during cold seasons, when individuals are susceptible to cold weather starvation resulting from low temperature and insufficient food to maintain body temperature. Metal live traps provide limited protection against cold temperatures, and it is often recommended to use covers to buffer external temperature fluctuations and prevent entry of moisture. Here, we compared the insulative performance of a PVC cover designed for Sherman traps and of bedding material, using data loggers to record temperature and humidity inside traps. We conducted different experiments simulating field conditions (traps at night with a heat source inside) and different treatments (cover, bedding material) to test the thermal insulation capacity of three models of widely used commercial traps: Longworth, Sherman, and Heslinga. Our findings indicated that Longworth and Sherman traps were better insulated against ambient air temperature fluctuations than Heslinga traps (+2.0 °C warmer on average). Bedding material was paramount in reducing relative humidity and increasing thermal insulation capacity of traps (+3.1 °C), an effect that was strengthened when a PVC cover was additionally used (+4.2 °C). The covered traps prevented the direct entrance of rain and dew (reducing damp bedding), provided camouflage (reducing thefts), and improved thermal and humidity conditions of traps (potentially increasing survival of captive small mammals). Our results suggest that using covers and bedding materials can improve thermal and humidity conditions within live traps, thus reducing the metabolic costs of thermoregulation and increasing survival chances for trapped small mammals during cold seasons.

Global change effects on Mediterranean small mammal population dynamics: Demography of Algerian mice (Mus spretus) along land use and climate gradients

Climate and land use change are key global change drivers shaping future species' distributions and abundances. Negative interactions among effects of drivers can reduce the accuracy of models aimed at predicting such distributions. Here we analyse how climate and land use affected population dynamics and demography of the Algerian mouse (Mus spretus), an open-land thermophilic Mediterranean small mammal. Change to a warmer and drier climate would facilitate the expansion of the species, whereas landscape change (forest encroachment following extensive land abandonment) would produce its retreat. We correlated abundance and demography parameters computed from captures obtained in 16 plots during a 10-years period (2008-2017; SEMICE small mammal monitoring) with climate, vegetation and land use change. Climate became warmer and dryer, and afforestation due to encroachment occurred in 81 % of plots. Expected positive effects of climate warming, derived from bioclimatic niche models, were counterbalanced by negative effects of both increasing hydric deficit and changes in vegetation and landscape structure. Abundance showed a slight but significant decline (-5 %). The species' range was more resilient to change, as shown by occupancy analyses, apparently due to strong local effects of vegetation structure on occupancy. This result highlighted that negative population trends would not necessarily produce range retractions. Simultaneously analysing both abundance trends and occupancy patterns may thus allow for deeper understanding and more accurate predictions of expected population trends in response to interacting global change drivers.

Indirect Human Influences in Fear Landscapes: Varying Effects of Moonlight on Small Mammal Activity along Man-Made Gradients of Vegetation Structure

Risk of predation is one of the main constraints of small mammal distribution and foraging activity. Aside from numerical effects on population size due to the presence and abundance of predators, indirect cues, such as vegetation structure and moonlight, determine patterns of activity and microhabitat use by small mammals. Indirect cues are expected to interact, as shading provided by vegetation can suppress the effects of changing moonlight. We analyzed the effects of moonlight levels on the activity patterns of three common small mammal species in Mediterranean habitats, and tested whether moonlight effects were modulated by shadowing associated with the development of tall vegetation due to spontaneous afforestation following land abandonment. A. sylvaticus, a strictly nocturnal species, decreased activity under moonlight with no interactive effects of vegetation cover. C. russula showed no activity change with moonlight levels and M. spretus increased activity, although activity in both species was mostly determined by vegetation cover, that favored it. The effects of moonlight on small mammal activity were not homogeneous among species, nor were the interactive effects of man-made gradients of habitat structure, a fact that will produce community changes along vegetation gradients mediated by varying fear landscapes.

Ungulate presence and predation risks reduce acorn predation by mice in dehesas

Foraging decisions by rodents are key for the long-term maintenance of oak populations in which avian seed dispersers are absent or inefficient. Decisions are determined by the environmental setting in which acorn-rodent encounters occur. In particular, seed value, competition and predation risks have been found to modify rodent foraging decisions in forest and human-modified habitats. Nonetheless, there is little information about their joint effects on rodent behavior, and hence, local acorn dispersal (or predation). In this work, we manipulate and model the mouse-oak interaction in a Spanish dehesa, an anthropogenic savanna system in which nearby areas can show contrasting levels of ungulate densities and antipredatory cover. First, we conducted a large-scale cafeteria field experiment, where we modified ungulate presence and predation risk, and followed mouse foraging decisions under contrasting levels of moonlight and acorn availability. Then, we estimated the net effects of competition and risk by means of a transition probability model that simulated mouse foraging decisions. Our results show that mice are able to adapt their foraging decisions to the environmental context, affecting initial fates of handled acorns. Under high predation risks mice foraged opportunistically carrying away large and small seeds, whereas under safe conditions large acorns tended to be predated in situ. In addition, in the presence of ungulates lack of antipredatory cover around trees reduced mice activity outside tree canopies, and hence, large acorns had a higher probability of survival. Overall, our results point out that inter-specific interactions preventing efficient foraging by scatter-hoarders can reduce acorn predation. This suggests that the maintenance of the full set of seed consumers as well as top predators in dehesas may be key for promoting local dispersal.

Assessing the Effects of Landscape Change on the Occupancy Dynamics of the Greater White-Toothed Shrew Crocidura russula

Land-use change is the main driver of biodiversity loss in the Mediterranean basin. New socio-economic conditions produced a rewilding process so that cultural landscapes are being invaded by more natural habitats. We analyze the effects of landscape change on the demography and the spatial distribution of Crocidura russula in six protected areas of the western Mediterranean basin. The study was conducted in the period 2008–2020 on 19 live trapping plots representing the three main natural habitats of the area (scrubland, pinewood, and holm oak woodland). We used a multiscale approach to ensure that the scale of response matched landscape structure (from plot to landscape) using either vegetation profiles (LiDAR) and land use data obtained from years 2007 and 2017. Statistical models (multiple-season single-species occupancy models) showed that C. russula populations were strongly associated to habitat features at the plot level. These models were used to predict occupancy at sampling units for the whole study area (850 km²), showing contrasting trends that shifted at relatively small spatial scales (expansions and retractions of species ranges). Parks showing extreme scrubland encroachment (−8% of area) and afforestation (+6%) significantly reduced habitat suitability for shrews and reductions in occupancy (−5%). Results would indicate faster changes in the spatial distribution of the target species than previously expected on the basis of climate change, driven by fast landscape changes.

Mesocarnivore Distribution along Gradients of Anthropogenic Disturbance in Mediterranean Landscapes

Wildfires are important sources of landscape change in Mediterranean environments, creating large patches of low-growth natural habitats (i.e., scrublands) inside protected areas, whereas woodland patches remain mostly near well protected human settlements. Landscape patterns resulting from these gradients influence habitat suitability for mesocarnivores regarding food and shelter. In winter and summer 2019, we sampled 16 independent line-transects with four camera traps each (64 cameras overall), covering the main habitats of the study area (woodlands, scrublands, and crops). Cameras were baited to compensate for the low detectability of target species, and mesocarnivore contacts were analysed by means of GLMMs and occupancy models. Our results showed a positive and stronger association of wild species with woodland habitats, despite the low proportion of habitat available, higher presence of competitors (other mesocarnivores), and potential predators (human pets, i.e., dogs), and low natural prey availability than in scrubland (i.e., small mammals). However, mesocarnivores will find protection against predators and resting sites in forests as well as other food opportunities in crops and urban areas, despite the possible interference with humans and their pets. Potential cascading effects linked to ecological roles of Mediterranean mesocarnivores on the succession of Mediterranean landscapes would imply longer-term effects of human disturbance on landscape trends.

Habitat Suitability for Small Mammals in Mediterranean Landscapes: How and Why Shrubs Matter

Fires are usually seen as a threat for biodiversity conservation in the Mediterranean, but natural afforestation after abandonment of traditional land uses is leading to the disappearance of open spaces that benefit many species of conservation interest. Fires create open habitats in which small mammals can live under more favourable conditions, such as lower predation, interspecific competition, and higher food availability. We analysed the role of changes in shrub cover and shrub preference by small mammals along the Mediterranean post-fire succession. We used data (period 2008–2018) from 17 plots woodlands and post-fire shrublands present in the study area (Barcelona’s Natural Parks, Catalonia, NE Spain), and vegetation structure was assessed by LiDAR technology for modelling ground-dwelling small mammal preferences. The diversity, abundance, and stability of Mediterranean small mammal communities negatively responded to vegetation structural complexity, which resulted from the combined effects of land abandonment and recovery after wildfires. We suggest that biotic factors such as vegetation profiles (providing food and shelter) and their interaction with predators and competitors could be responsible for the observed patterns. Considering the keystone role of small mammals in the sustainability of Mediterranean forest, our results could be useful for management under the current global change conditions.

Small mammal sampling incidents related to wild boar (Sus scrofa) in natural peri–urban areas

The wild boar (Sus scrofa) has recently shown continuous population increases in many countries, leading to a rise in conflicts with human activities, including habituation to people and urban areas. Wild boar can disrupt the sampling of small mammals by reducing the number of potential captures. In this study we analysed whether sampling incidents recorded within a small mammal monitoring programme (SEMICE, www.semice.org) might be related to the density of wild boar in a network of protected parks. Our results suggested a peri–urban effect that was independent of wild boar densities in the protected parks; the number of damaged traps increased (rendering them inoperable for captures) and potentially resulted in underestimates of small mammals due to fewer functioning traps in the study area. We hypothesised that this high rate of damage to traps in a small and localised area in a peri–urban park could be related to wild boar associating human presence with greater opportunities to obtain food items of anthropogenic origin.

Multi-species prey dynamics influence local survival in resident and wintering generalist predators

Stochasticity in food availability influences vital rates such as survival and fertility. Life-history theory predicts that in long-lived organisms, survival should be buffered against environmental stochasticity showing little temporal variability. Furthermore, to optimize survival prospects, many animal species perform migrations to wintering areas where food availability is larger. Species with large latitudinal distribution ranges may show populations that migrate and others that are resident, and they may co-occur in winter. One example of these species is the predatory raptor buzzard Buteo buteo. Here, we test whether temporal variability in the density of five small mammal species of prey inhabiting different habitats (shrubland and forests) influences local annual survival of buzzards in a wintering area depending on their age and residency status (residents versus wintering individuals). We found that prey density explained a considerable amount of annual changes in local survival, which was higher for older and resident birds. This difference in local survival likely corresponded to philopatry to the wintering area, which was larger for residents and increased when prey density was larger. The total density of prey inhabiting open shrublands was the variable explaining more variance in temporal variability of local survival, even though the study area is mostly occupied by woodlands. Temporal population dynamics of the different small mammals inhabiting shrublands were not synchronous, which suggests that buzzards preyed opportunistically on the most abundant prey each winter. Generalist predation may buffer the impact of resource unpredictability for pulsed and asynchronous prey dynamics, typical of small mammals in winter.

Concurrent Butterfly, Bat and Small Mammal Monitoring Programmes Using Citizen Science in Catalonia (NE Spain): A Historical Review and Future Directions

The Biodiversity and Bioindicators research group (BiBIO), based at the Natural Sciences Museum of Granollers, has coordinated four long-term faunal monitoring programmes based on citizen science over more than two decades in Catalonia (NE Spain). We summarize the historical progress of these programmes, describing their main conservation outputs, the challenges overcome, and future directions. The Catalan Butterfly Monitoring Scheme (CBMS) consists of a network of nearly 200 recording sites where butterfly populations have been monitored through visual censuses along transects for nearly three decades. This programme provides accurate temporal and spatial changes in the abundance of butterflies and relates them to different environmental factors (e.g., habitat and weather conditions). The Bat Monitoring Programme has progressively evolved to include passive acoustic monitoring protocols, as well as bat box-, underground- and river-bat surveys, and community ecological indices have been developed to monitor bat responses at assemblage level to both landscape and climatic changes. The Monitoring of common small mammals in Spain (SEMICE), a common small mammal monitoring programme with almost 80 active live-trapping stations, provides information to estimate population trends and has underlined the relevance of small mammals as both prey (of several predators) and predators (of insect forest pests). The Dormouse Monitoring Programme represents the first monitoring programme in Europe using specific nest boxes for the edible dormouse, providing information about biological and demographic data of the species at the southern limit of its distribution range. The combination and complementarity of these monitoring programmes provide crucial data to land managers to improve the understanding of conservation needs and develop efficient protection laws.

Biodiversity of the Regional Landscape Park Samara Plavni within the first large reservoir in Europe Biodiversity of the Regional Landscape Park Samara Plavni within the first large reservoir in Europe

The creation of reservoirs in river valleys for the accumulation of fresh water has been and remains an important issue around the world. This process has both positive and negative consequences for people and nature. Significant changes in the regime of rivers and their valleys, flooding of meadows and forests, flooding of soils and changes in the composition of flora and fauna of adjacent territories are taking place. In this article, we consider the restoration of the biodiversity of a site of disturbed lands after the creation of one of the first large reservoirs in Europe – the Dnieper (Zaporozhe) on the River Dnieper, which has existed since 1933. The territory of the Samara floodplains was formed on the floodplain of the mouth of the Samara River, as a result of which the territories of various forest, meadow and bog biotopes were flooded. For almost 90 years, new biotopes have been developing, and populations of plant and animal species, especially waterfowl, have been renewed and enriched. In the conditions of climate change and anthropogenic pressure, the existence of this territory has fallen into question. To control the conservation of biodiversity, it is necessary to apply various management methods, one of which is creation of nature reserves. The article presents the results of a complex of scientific studies that were carried out during the zoning of the regional park Samara Plavni to improve the management of the protection of water areas and river banks. We have investigated: hydrological features, species diversity of the flora and coenotic diversity of the vegetation, fauna of aquatic invertebrates, and terrestrial vertebrates. Zoning of the Regional Landscape Park was based on the composition of stable components of ecosystems. When applying the protected regime in different zones, conditions will be created for the preservation of habitats of species, including those protected in Europe: higher plants (Senecio borysthenicus (DC.) Andrz. ex Czern., Tragopogon borystenicus Artemcz.), reptiles (Emys orbicularis (Linnaeus, 1758), Vipera renardi (Christoph, 1861)), birds (Aythya ferina (Linnaeus, 1758), Vanellus vanellus (Linnaeus, 1758), Haematopus ostralegus Linnaeus, 1758, Numenius arquata (Linnaeus, 1758), Alcedo atthis (Linnaeus, 1758), Lanius excubitor (Linnaeus, 1758)), mammals (Lutra lutra (Linnaeus, 1758)). Such changes would increase the implementation of the reproductive potential of all species without exception in the studied ecosystems.

Population dynamics of small endotherms under global change: Greater white-toothed shrews Crocidura russula in Mediterranean habitats

Small endotherms would be especially exposed to main global change drivers (habitat and climate changes) but would also be able to withstand them by adjusting population dynamics locally to changing climate- and habitat-driven food and predation conditions. We analyse the relative importance of changes in climate (mean and variability, including relevant time-lags) and habitat conditions on the abundance, age structure and growth rate of Mediterranean populations of a small endotherm, the greater white-toothed shrew Crocidura russula, along a 10-year period (2008-2017). Habitat type and season were the key factors shaping shrew population dynamics, which showed consistent peak numbers in open habitats in autumn, after the spring-summer reproductive period. Significant increases in aridity (increasing temperature and decreasing rainfall) along the study period did not explain variation in shrew numbers, although short-term variations in abundance were negatively related to relative air humidity and temperature over three last months prior to the surveys. Overall, ongoing climate change have not yet affected shrew population dynamics in its core areas of the Mediterranean region, in spite of expectations based on climate change rate in this region and small endotherm sensitivity to these changes. Reliance on open habitats with lower predation pressure would explain the resilience of shrew populations to climate change. However, current trends of land use change (land abandonment and afforestation) threaten Mediterranean open habitats, so that resilience would not last for long if these trends are not counteracted.

Local habitat specialization as an evolutionary response to interspecific competition between two sympatric shrews

Interspecific competition affects population dynamics, distributional ranges, and evolution of competing species. The competitive exclusion principle states that ecologically similar species cannot coexist unless they exhibit niche segregation. Herein, we assess whether niche segregation allows the coexistence of Crocidura russula and C. suaveolens in southwestern Iberia and whether segregation is the result of current (ecological effect) or past (evolutionary effect) competition. We performed an annual live-trapping cycle in the two main habitats of the Odiel Marshes Natural Reserve (OMNR), the tidal marsh and the Mediterranean forest, both in syntopic (i.e., where both species co-occur) and allotopic (where only one of the two species occurs) sites within this Reserve. We modeled the presence–absence of each species in both habitats and sites by generalized linear mixed models. The coexistence of both species was favored by spatial and temporal niche segregation. Crocidura suaveolens was restricted to tidal marsh and did not occupy Mediterranean forest, even when C. russula was absent. We interpret this to be the result of competition in the past triggering an evolutionary response in C. suaveolens towards its specialization in tidal marsh. Moreover, the specialist C. suaveolens currently is outcompeting C. russula in tidal marshes, reversing the dominance pattern observed elsewhere. The degree of co-occurrence between both species in syntopic sites was low, as they showed inverse dynamics of seasonal abundances. Interspecific competition leading to habitat specialization favors the coexistence of these ecologically similar species.

Mark my words: experts’ choice of marking methods used in capture-mark-recapture studies of small mammals

Crucial to the success of studies based on capture-mark-recapture (CMR) designs is the retention (permanency) and recognition (readability) of marks to identify individuals. Several marking methods for small mammals (< 60 g) are available, but their efficacy and use is not well known. We implemented a targeted survey of experts to gather their experiences and opinions regarding marking small mammals. Respondents (n = 114) stated their beliefs, perceptions, and current and future use, of marking methods, as well as factors influencing their choices, based on Likert and rank order scale questions. We compared responses based on where researchers’ studies occurred, their level of experience, and their subfield of mammalogy. Most respondents (73%) had > 5 years experience marking small mammals, with 60% each marking > 1,000 individuals. Respondents believed that ear-tagging was most preferable in terms of efficiency, impact to affected animals (survival, pain), and personal ethics, whereas passive integrated transponder (PIT)-tagging was the most preferable with regard to retention and recognition, and toe-clipping with respect to cost. Most respondents plan to use ear-tagging (78%) or PIT-tagging (70%) in the future. PIT- and genetic-tagging are expected to increase, and toe-clipping to decline, in the future. The factors influencing which marking method respondents used were ranked—in order of decreasing preference—as impact, retention, recognition, cost, efficiency, and ethics. There were few differences in the mean response or consensus among respondents, regardless of their experience, location, or subfield. Most respondents (66%) agreed that additional studies on the performance and impact of various marking methods are needed to assess their costs and benefits for CMR-based studies. Ultimately, choice of marking method will depend on the species, research question, available resources, and local legislation and permitting. Our study, however, illustrates that collective insights by experienced mammalogists may aid individual researchers in deciding on study designs and protocols, particularly early career scientists.