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Olegovna LA, Alexandrovna VE, Sergeevna KA, Vasilievich MY, Alexandrovich SA. Aldolase of Mytilus galloprovincialis, Lamarck, 1819: Gene structure, tissue specificity of expression level and activity. Comp Biochem Physiol B Biochem Mol Biol 2023; 267:110862. [PMID: 37146868 DOI: 10.1016/j.cbpb.2023.110862] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2023] [Revised: 04/25/2023] [Accepted: 05/02/2023] [Indexed: 05/07/2023]
Abstract
In the present study, the structure of the fructose-1,6-bisphosphataldolase (FBA) gene in Mytilus galloprovincialis (Lamarck, 1819) was analyzed and its tissue specificity of expression level and activity was determined. A 1092 base pairs (bps) complete coding sequence of the FBA gene was assembled from M. galloprovincialis transcriptome. Only one gene encoding FBA (MgFBA) was identified in the M. galloprovincialis genome. The length of MgFBA was 363 amino acids with a molecular mass of 39.7 kDa. According to the amino acid residues, the detected MgFBA gene is a type I aldolase. The FBA gene in M. galloprovincialis had 7 exons; the maximum intron length was about 2.5 kbps. Intraspecific nucleotide diversity (15 mutations) between MgFBAs from the Mediterranean mussels and the Black Sea mussels (present study) was detected. All mutations were synonymous. Tissue specificity in FBA expression level and activity was established. No direct correlation between these functions was found. The highest level of FBA gene expression is found in muscle tissue. According to the phylogenetic analyses, FBA gene in invertebrates could be considered the ancestral gene of muscle type aldolase, which may explain the character of tissue-specific expression.
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Affiliation(s)
| | - Vodiasova Ekaterina Alexandrovna
- Federal Research Center «Institute of Biology of Southern Seas RAS», Department Animal Physiology and Biochemistry, Moscow office: 38 Leninsky Ave., Moscow 119991, Russia; Sevastopol State University, Physic Department, 33 Universitetskaya Str., Sevastopol 299053, Russia
| | - Kokhan Alena Sergeevna
- Federal Research Center «Institute of Biology of Southern Seas RAS», Department Animal Physiology and Biochemistry, Moscow office: 38 Leninsky Ave., Moscow 119991, Russia
| | - Meger Yakov Vasilievich
- Sevastopol State University, Physic Department, 33 Universitetskaya Str., Sevastopol 299053, Russia
| | - Soldatov Alexander Alexandrovich
- Federal Research Center «Institute of Biology of Southern Seas RAS», Department Animal Physiology and Biochemistry, Moscow office: 38 Leninsky Ave., Moscow 119991, Russia; Sevastopol State University, Physic Department, 33 Universitetskaya Str., Sevastopol 299053, Russia
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Vargas-Peralta CE, Araneda C, Galindo-Sánchez CE, Larraín MA, Del Río-Portilla MA, Lafarga-De la Cruz F. Species identification in Haliotis genus from the northeastern Pacific Ocean using genome-wide RAD-SNPs. Food Control 2022. [DOI: 10.1016/j.foodcont.2022.108979] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Delorme NJ, Frost EJ, Sewell MA. Effect of acclimation on thermal limits and hsp70 gene expression of the New Zealand sea urchin Evechinus chloroticus. Comp Biochem Physiol A Mol Integr Physiol 2020; 250:110806. [DOI: 10.1016/j.cbpa.2020.110806] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2020] [Revised: 09/07/2020] [Accepted: 09/08/2020] [Indexed: 12/17/2022]
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Chen N, Huang Z, Lu C, Shen Y, Luo X, Ke C, You W. Different Transcriptomic Responses to Thermal Stress in Heat-Tolerant and Heat-Sensitive Pacific Abalones Indicated by Cardiac Performance. Front Physiol 2019; 9:1895. [PMID: 30687115 PMCID: PMC6334008 DOI: 10.3389/fphys.2018.01895] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2018] [Accepted: 12/17/2018] [Indexed: 12/12/2022] Open
Abstract
The Pacific abalone Haliotis discus hannai is one of the most economically important mollusks in China. Even though it has been farmed in southern China for almost 20 years, summer mortality remains the most challengeable problem for Pacific abalone aquaculture recently. Here, we determined the different heat tolerance ability for five selective lines of H. discus hannai by measuring the cardiac performance and Arrhenius breakpoint temperature (ABT). The Red line (RL) and Yangxia line (YL) were determined as the most heat-sensitive and most heat-tolerant line, respectively. Heart rates for RL were significantly lower than those of the YL at the same temperature (p < 0.05). The differentially expressed genes (DEGs), which were enriched in several pathways including cardiac muscle contraction, glutathione metabolism and oxidative phosphorylation, were identified between RL and YL at control temperature (20°C) and heat stress temperature (28.5°C, the ABT of the RL) by RNA-seq method. In the RL, 3370 DEGs were identified between the control and the heat-stress temperature, while only 1351 DEGs were identified in YL between these two temperature tests. Most of these DEGs were enriched in the pathways such as protein processing in endoplasmic reticulum, nucleotide binding and oligomerization domain (NOD) like receptor signaling, and ubiquitin mediated proteolysis. Notably, the most heat-tolerant line YL used an effective heat-protection strategy based on moderate transcriptional changes and regulation on the expression of key genes.
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Affiliation(s)
- Nan Chen
- State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, China
- College of the Environment and Ecology, Xiamen University, Xiamen, China
| | - Zekun Huang
- State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, China
- College of Ocean and Earth Sciences, Xiamen University, Xiamen, China
- State-Province Joint Engineering Laboratory of Marine Bioproducts and Technology, College of Ocean and Earth Sciences, Xiamen University, Xiamen, China
| | - Chengkuan Lu
- College of Ocean and Earth Sciences, Xiamen University, Xiamen, China
- State-Province Joint Engineering Laboratory of Marine Bioproducts and Technology, College of Ocean and Earth Sciences, Xiamen University, Xiamen, China
| | - Yawei Shen
- State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, China
- College of Ocean and Earth Sciences, Xiamen University, Xiamen, China
- State-Province Joint Engineering Laboratory of Marine Bioproducts and Technology, College of Ocean and Earth Sciences, Xiamen University, Xiamen, China
| | - Xuan Luo
- State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, China
- College of Ocean and Earth Sciences, Xiamen University, Xiamen, China
- State-Province Joint Engineering Laboratory of Marine Bioproducts and Technology, College of Ocean and Earth Sciences, Xiamen University, Xiamen, China
| | - Caihuan Ke
- State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, China
- College of Ocean and Earth Sciences, Xiamen University, Xiamen, China
- State-Province Joint Engineering Laboratory of Marine Bioproducts and Technology, College of Ocean and Earth Sciences, Xiamen University, Xiamen, China
| | - Weiwei You
- State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, China
- College of Ocean and Earth Sciences, Xiamen University, Xiamen, China
- State-Province Joint Engineering Laboratory of Marine Bioproducts and Technology, College of Ocean and Earth Sciences, Xiamen University, Xiamen, China
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Crawford DL, Oleksiak MF. Ecological population genomics in the marine environment. Brief Funct Genomics 2016; 15:342-51. [DOI: 10.1093/bfgp/elw008] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
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Valenzuela-Castillo A, Sánchez-Paz A, Castro-Longoria R, López-Torres MA, Grijalva-Chon JM. Seasonal changes in gene expression and polymorphism of hsp70 in cultivated oysters (Crassostrea gigas) at extreme temperatures. MARINE ENVIRONMENTAL RESEARCH 2015; 110:25-32. [PMID: 26254584 DOI: 10.1016/j.marenvres.2015.07.019] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2015] [Revised: 07/30/2015] [Accepted: 07/30/2015] [Indexed: 06/04/2023]
Abstract
The HSP70 proteins are an important element of the response against thermal stress and infectious diseases, and they are highly conserved and ubiquitous. In some species, variations on the hsp70 encoding sequence resulted in intraspecific differential expression, which leads to variations on thermo-tolerance among individuals. This phenomenon has not been described in the Pacific oyster Crassostrea gigas, which is cultivated in Mexico under temperature conditions highly above the optimal for this species. The present study was aimed to identify associations between hsp70 genotypes and their expression levels in C. gigas. By analyzing a 603 bp fragment from the 3' end of the hsp70 gene, 21 different genotypes with 60 nucleotide polymorphic sites were detected, of which 34 sites were found in heterozygous condition. Although no correlation was found between genotype-expression-season, a minimum expression threshold that should be taken into account as an important feature for a future breeding program is proposed.
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Affiliation(s)
- Adán Valenzuela-Castillo
- Universidad de Sonora, Departamento de Investigaciones Científicas y Tecnológicas, Hermosillo, Sonora 83000, Mexico
| | - Arturo Sánchez-Paz
- Centro de Investigaciones Biológicas del Noroeste S.C. Laboratorio de Referencia, Análisis y Diagnóstico en Sanidad Acuícola, Hermosillo, Sonora 83106, Mexico
| | - Reina Castro-Longoria
- Universidad de Sonora, Departamento de Investigaciones Científicas y Tecnológicas, Hermosillo, Sonora 83000, Mexico
| | - Marco Antonio López-Torres
- Universidad de Sonora, Departamento de Investigaciones Científicas y Tecnológicas, Hermosillo, Sonora 83000, Mexico
| | - José Manuel Grijalva-Chon
- Universidad de Sonora, Departamento de Investigaciones Científicas y Tecnológicas, Hermosillo, Sonora 83000, Mexico.
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Li WD, Huang M, Lü WG, Chen X, Shen MH, Li XM, Wang RX, Ke CH. Involvement of Antizyme Characterized from the Small Abalone Haliotis diversicolor in Gonadal Development. PLoS One 2015; 10:e0135251. [PMID: 26313647 PMCID: PMC4551804 DOI: 10.1371/journal.pone.0135251] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2015] [Accepted: 07/20/2015] [Indexed: 12/19/2022] Open
Abstract
The small abalone Haliotis diversicolor is an economically important mollusk that is widely cultivated in Southern China. Gonad precocity may affect the aquaculture of small abalone. Polyamines, which are small cationic molecules essential for cellular proliferation, may affect gonadal development. Ornithine decarboxylase (ODC) and antizyme (AZ) are essential elements of a feedback circuit that regulates cellular polyamines. This paper presents the molecular cloning and characterization of AZ from small abalone. Sequence analysis showed that the cDNA sequence of H. diversicolor AZ (HdiODCAZ) consisted of two overlapping open reading frames (ORFs) and conformed to the +1 frameshift property of the frame. Thin Layer chromatography (TLC) analysis suggested that the expressed protein encoded by +1 ORF2 was the functional AZ that targets ODC to 26S proteasome degradation. The result demonstrated that the expression level of AZ was higher than that of ODC in the ovary of small abalone. In addition, the expression profiles of ODC and AZ at the different development stages of the ovary indicated that these two genes might be involved in the gonadal development of small abalone.
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Affiliation(s)
- Wei-Dong Li
- Hainan Academy of Ocean and Fisheries Sciences, Haikou, Hainan Province, China
| | - Min Huang
- Hainan Academy of Ocean and Fisheries Sciences, Haikou, Hainan Province, China
| | - Wen-Gang Lü
- College of Oceanography and Environmental Science, Xiamen University, Xiamen, Fujian Province, China
| | - Xiao Chen
- Guangxi Key Lab for Mangrove Conservation and Utilization, Guangxi Mangrove Research Center, Beihai, Guangxi Province, China
| | - Ming-Hui Shen
- Hainan Academy of Ocean and Fisheries Sciences, Haikou, Hainan Province, China
| | - Xiang-Min Li
- Hainan Academy of Ocean and Fisheries Sciences, Haikou, Hainan Province, China
| | - Rong-Xia Wang
- Hainan Academy of Ocean and Fisheries Sciences, Haikou, Hainan Province, China
| | - Cai-Huan Ke
- College of Oceanography and Environmental Science, Xiamen University, Xiamen, Fujian Province, China
- * E-mail:
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De Wit P, Pespeni MH, Palumbi SR. SNP genotyping and population genomics from expressed sequences - current advances and future possibilities. Mol Ecol 2015; 24:2310-23. [DOI: 10.1111/mec.13165] [Citation(s) in RCA: 89] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2014] [Revised: 03/13/2015] [Accepted: 03/18/2015] [Indexed: 02/01/2023]
Affiliation(s)
- Pierre De Wit
- Department of Biology and Environmental Sciences; University of Gothenburg; Sven Lovén Centre for Marine Science - Tjärnö; Hättebäcksvägen 7 Strömstad SE-452 96 Sweden
| | - Melissa H. Pespeni
- Department of Biology; University of Vermont; Marsh Life Science; Rm 326A 109 Carrigan Drive Burlington VT 05405 USA
| | - Stephen R. Palumbi
- Department of Biology; Stanford University; Hopkins Marine Station 120 Ocean view Blvd. Pacific Grove CA 93950 USA
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Picone B, Rhode C, Roodt-Wilding R. Transcriptome profiles of wild and cultured South African abalone, Haliotis midae. Mar Genomics 2015; 20:3-6. [PMID: 25622884 DOI: 10.1016/j.margen.2015.01.002] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2014] [Revised: 01/13/2015] [Accepted: 01/14/2015] [Indexed: 11/30/2022]
Abstract
This report describes the use of pyrosequencing technologies to generate the first comparative analysis of de novo assembled transcriptome data from cultured and wild specimens of the South African abalone. The transcriptome data and database described here provide a significant genomic resource for abalone research. The data set annotated 11,240 genes, which matched genes with known functions in other species. A large number of transmembrane protein domains (4087) that may indicate a high portion of undiscovered gene receptors were identified. Further, we detected an interesting set of transcription factors (516) that are valuable candidates for participating in regulatory events in developmental (such as cell proliferation and differentiation) and reproductive processes.
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Affiliation(s)
- Barbara Picone
- Department of Genetics, Stellenbosch University, Private Bag X1, Matieland 7602, South Africa.
| | - Clint Rhode
- Department of Genetics, Stellenbosch University, Private Bag X1, Matieland 7602, South Africa
| | - Rouvay Roodt-Wilding
- Department of Genetics, Stellenbosch University, Private Bag X1, Matieland 7602, South Africa
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