Spatial and temporal variations in stable isotope values (δ13C and δ15N) of the primary and secondary consumers along the southern coastline of the Caspian Sea

Genome-resolved insight into the reservoir of antibiotic resistance genes in aquatic microbial community

Aquatic microbial communities are an important reservoir of antibiotic resistance genes (ARGs). However, distribution and diversity of different ARG categories in environmental microbes with different ecological strategies is not yet well studied. Despite the potential exposure of the southern part of the Caspian Sea to the release of antibiotics, little is known about its natural resistome profile. We used a combination of Hidden Markov model (HMM), homology alignment and a deep learning approach for comprehensive screening of the diversity and distribution of ARGs in the Caspian Sea metagenomes at genome resolution. Detected ARGs were classified into five antibiotic resistance categories including prevention of access to target (44%), modification/protection of targets (30%), direct modification of antibiotics (22%), stress resistance (3%), and metal resistance (1%). The 102 detected ARG containing metagenome-assembled genomes of the Caspian Sea were dominated by representatives of Acidimicrobiia, Gammaproteobacteria, and Actinobacteria classes. Comparative analysis revealed that the highly abundant, oligotrophic, and genome streamlined representatives of taxa Acidimicrobiia and Actinobacteria modify the antibiotic target via mutation to develop antibiotic resistance rather than carrying extra resistance genes. Our results help with understanding how the encoded resistance categories of each genome are aligned with its ecological strategies.

Impacts on food web properties of island invertebrate communities vary between different human land uses

Human land use is of growing concern for island ecosystems. Besides direct impacts on biodiversity, land uses can alter the functioning and structure of ecosystems. Central to this are impacts on food webs. The release of additional nutrients from human origin, habitat homogenization, or environmental filtering due to human land use can change the diet of individual consumer species (i.e., their trophic niches) and the distribution and overlap of trophic niches within a food web. However, it remains largely unclear whether the effects on food web properties vary between the different and predominant human land uses present on islands. Here, we investigated the impact of two dominant human land uses on small oceanic islands (i.e., urban and tourism development) and tested if and how different land uses on islands affect food web structure. To disentangle human land uses, we investigated islands, which were either privately owned by a tourist facility (i.e., exclusively tourism land use) or experienced urban development from the local population (i.e., urban land use), or remained uninhabited, serving as reference sites free of direct land use. Using stable isotope analysis, we show that isotope signature, trophic (isotopic) niches, and overall food web properties of the investigated island invertebrate communities were significantly changed under both land use regimes. While trophic diversity was reduced and trophic niche widths increased under tourism land use, the investigated food webs showed reduced trophic diversity at the food web base and a more uneven trophic niche distribution under urban land use. In summary, these findings show that different human land uses can have contrasting impacts on oceanic island food webs. As oceanic islands experience rapidly growing human land conversion, our results indicate that they may also face increasing yet unpredictable long-term changes in food web dynamics.

Transport process and source contribution of nitrogen in stormwater runoff from urban catchments

Nitrogen in urban stormwater has been widely studied, and effective management of nitrogen pollution is critical for improving urban stormwater and receiving water quality. This requires an in-depth understanding of the transport process and source contribution to both dissolved and particulate nitrogen in stormwater from urban catchments. In this study, 123 stormwater runoff samples were collected from an urban catchment during different rainfall events. Dissolved and particulate nitrogen concentrations in roof runoff, road runoff, and sewer flow were analyzed. The concentration of dissolved nitrogen was higher in roof runoff than in road runoff and sewer flow. However, the concentration of particulate nitrogen was lower in roof runoff than in road runoff and sewer flow. Isotopic analysis and Bayesian mixing models showed that road runoff was the largest source contributor of both nitrate and particulate organic nitrogen (PON) in sewer flow discharged from the study catchment. In addition, road runoff contributed the majority of PON associated with coarse particles (>105 μm), whereas PON associated with fine particles (<105 μm) was primarily washed-off of sewer sediments. The results provided several suggestions for the management of nitrogen pollution in urban catchments. This study could help to fully understand the transport and sources of nitrogen pollution in urban stormwater and provide recommendations to the government for implementing appropriate stormwater management strategies to minimize stormwater pollution.