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Hartman S, Ryan SD, Karamched BR. Walk this way: modeling foraging ant dynamics in multiple food source environments. J Math Biol 2024; 89:41. [PMID: 39266783 PMCID: PMC11392994 DOI: 10.1007/s00285-024-02136-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2024] [Revised: 06/14/2024] [Accepted: 08/08/2024] [Indexed: 09/14/2024]
Abstract
Foraging for resources is an essential process for the daily life of an ant colony. What makes this process so fascinating is the self-organization of ants into trails using chemical pheromone in the absence of direct communication. Here we present a stochastic lattice model that captures essential features of foraging ant dynamics inspired by recent agent-based models while forgoing more detailed interactions that may not be essential to trail formation. Nevertheless, our model's results coincide with those presented in more sophisticated theoretical models and experiments. Furthermore, it captures the phenomenon of multiple trail formation in environments with multiple food sources. This latter phenomenon is not described well by other more detailed models. We complement the stochastic lattice model by describing a macroscopic PDE which captures the basic structure of lattice model. The PDE provides a continuum framework for the first-principle interactions described in the stochastic lattice model and is amenable to analysis. Linear stability analysis of this PDE facilitates a computational study of the impact various parameters impart on trail formation. We also highlight universal features of the modeling framework that may allow this simple formation to be used to study complex systems beyond ants.
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Affiliation(s)
- Sean Hartman
- College of Music, Florida State University, Tallahassee, FL, 32306, USA
- Department of Mathematics, Florida State University, Tallahassee, FL, 32306, USA
| | - Shawn D Ryan
- Department of Mathematics and Statistics, Cleveland State University, Cleveland, OH, 44115, USA.
- Center for Applied Data Analysis and Modeling, Cleveland State University, Cleveland, 44115, OH, USA.
| | - Bhargav R Karamched
- Department of Mathematics, Florida State University, Tallahassee, FL, 32306, USA.
- Institute of Molecular Biophysics, Florida State University, Tallahassee, FL, 32306, USA.
- Program in Neuroscience, Florida State University, Tallahassee, FL, 32306, USA.
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Tennenbaum M, Fernandez-Nieves A. Activity effects on the nonlinear mechanical properties of fire-ant aggregations. Phys Rev E 2020; 102:012602. [PMID: 32794916 DOI: 10.1103/physreve.102.012602] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2020] [Accepted: 06/09/2020] [Indexed: 12/14/2022]
Abstract
Individual fire ants are inherently active as they are living organisms that convert stored chemical energy into motion. However, each individual ant is not equally disposed to motion at any given time. In an active aggregation, most of the constituent ants are active, and vice versa for an inactive aggregation. Here we look at the role activity plays on the nonlinear mechanical behavior of the aggregation through large amplitude oscillatory shear measurements. We find that the level of viscous nonlinearity can be decreased by increasing the activity or by increasing the volume fraction. In contrast, the level of elastic nonlinearity is not affected by either activity or volume fraction. We interpret this in terms of a transient network with equal rates of linking and unlinking but with varying number of linking and unlinking events.
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Affiliation(s)
- Michael Tennenbaum
- School of Physics, Georgia Institute of Technology, Atlanta, Georgia 30332, USA.,Department of Condensed Matter Physics, University of Barcelona, 08028 Barcelona, Spain
| | - Alberto Fernandez-Nieves
- School of Physics, Georgia Institute of Technology, Atlanta, Georgia 30332, USA.,Department of Condensed Matter Physics, University of Barcelona, 08028 Barcelona, Spain.,ICREA-Instituci Catalana de Recerca i Estudis Avanats, 08010 Barcelona, Spain
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Rashid S, Long Z, Singh S, Kohram M, Vashistha H, Navlakha S, Salman H, Oltvai ZN, Bar-Joseph Z. Adjustment in tumbling rates improves bacterial chemotaxis on obstacle-laden terrains. Proc Natl Acad Sci U S A 2019; 116:11770-11775. [PMID: 31127043 PMCID: PMC6575235 DOI: 10.1073/pnas.1816315116] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The mechanisms of bacterial chemotaxis have been extensively studied for several decades, but how the physical environment influences the collective migration of bacterial cells remains less understood. Previous models of bacterial chemotaxis have suggested that the movement of migrating bacteria across obstacle-laden terrains may be slower compared with terrains without them. Here, we show experimentally that the size or density of evenly spaced obstacles do not alter the average exit rate of Escherichia coli cells from microchambers in response to external attractants, a function that is dependent on intact cell-cell communication. We also show, both by analyzing a revised theoretical model and by experimentally following single cells, that the reduced exit time in the presence of obstacles is a consequence of reduced tumbling frequency that is adjusted by the E. coli cells in response to the topology of their environment. These findings imply operational short-term memory of bacteria while moving through complex environments in response to chemotactic stimuli and motivate improved algorithms for self-autonomous robotic swarms.
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Affiliation(s)
- Sabrina Rashid
- Computational Biology Department, Carnegie Mellon University, Pittsburgh, PA 15213
| | - Zhicheng Long
- Department of Physics and Astronomy, University of Pittsburgh, Pittsburgh, PA 15260
- Department of Pathology, University of Pittsburgh, Pittsburgh, PA 15261
| | - Shashank Singh
- Machine Learning Department, Carnegie Mellon University, Pittsburgh, PA 15213
- Department of Statistics, Carnegie Mellon University, Pittsburgh, PA 15213
| | - Maryam Kohram
- Department of Physics and Astronomy, University of Pittsburgh, Pittsburgh, PA 15260
| | - Harsh Vashistha
- Department of Physics and Astronomy, University of Pittsburgh, Pittsburgh, PA 15260
| | - Saket Navlakha
- Center for Integrative Biology, The Salk Institute for Biological Studies, La Jolla, CA 92037
| | - Hanna Salman
- Department of Physics and Astronomy, University of Pittsburgh, Pittsburgh, PA 15260;
- Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, PA 15260
| | - Zoltán N Oltvai
- Department of Pathology, University of Pittsburgh, Pittsburgh, PA 15261;
- Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, PA 15260
| | - Ziv Bar-Joseph
- Computational Biology Department, Carnegie Mellon University, Pittsburgh, PA 15213;
- Machine Learning Department, Carnegie Mellon University, Pittsburgh, PA 15213
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Baek SK, Kim BJ. Free energy of a chemotactic model with nonlinear diffusion. Sci Rep 2017; 7:8909. [PMID: 28827589 PMCID: PMC5566508 DOI: 10.1038/s41598-017-09369-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2017] [Accepted: 07/24/2017] [Indexed: 11/16/2022] Open
Abstract
The Patlak-Keller-Segel equation is a canonical model of chemotaxis to describe self-organized aggregation of organisms interacting with chemical signals. We investigate a variant of this model, assuming that the organisms exert effective pressure proportional to the number density. From the resulting set of partial differential equations, we derive a Lyapunov functional that can also be regarded as the free energy of this model, and minimize it with a Monte Carlo method to detect the condition for self-organized aggregation. Focusing on radially symmetric solutions on a two-dimensional disc, we find that the chemical interaction competes with diffusion so that aggregation occurs when the relative interaction strength exceeds a certain threshold. Based on the analysis of the free-energy landscape, we argue that the transition from a homogeneous state to aggregation is abrupt yet continuous.
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Affiliation(s)
- Seung Ki Baek
- Department of Physics, Pukyong National University, Busan, 48513, Korea.
| | - Beom Jun Kim
- Department of Physics, Sungkyunkwan University, Suwon, 16419, Korea.
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Bodnar M, Okińczyc N, Vela-Pérez M. Mathematical model for path selection by ants between nest and food source. Math Biosci 2016; 285:14-24. [PMID: 27979678 DOI: 10.1016/j.mbs.2016.12.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2016] [Revised: 11/28/2016] [Accepted: 12/10/2016] [Indexed: 11/24/2022]
Abstract
Several models have been proposed to describe the behavior of ants when moving from nest to food sources. Most of these studies where based on numerical simulations with no mathematical justification. In this paper, we propose a mechanism for the formation of paths of minimal length between two points by a collection of individuals undergoing reinforced random walks taking into account not only the lengths of the paths but also the angles (connected to the preference of ants to move along straight lines). Our model involves reinforcement (pheromone accumulation), persistence (tendency to preferably follow straight directions in absence of any external effect) and takes into account the bifurcation angles of each edge (represented by a probability of willingness of choosing the path with the smallest angle). We describe analytically the results for 2 ants and different path lengths and numerical simulations for several ants.
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Affiliation(s)
- Marek Bodnar
- Institute of Applied Mathematics and Mechanics, University of Warsaw, Banacha 2, 02-097 Warsaw, Poland.
| | - Natalia Okińczyc
- Institute of Applied Mathematics and Mechanics, University of Warsaw, Banacha 2, 02-097 Warsaw, Poland.
| | - M Vela-Pérez
- Universidad Europea de Madrid, C/ Tajo, Villaviciosa de Odón, Madrid 28670, Spain; Service de Physique de l'Etat Condensé, CEA-Saclay, 91191 Gif-sur-Yvette, France; Instituto de Ciencias Matemáticas, (CSIC), C/ Nicolás Cabrera 15, 28049 Madrid, Spain.
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