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Khalilzad Z, Tadj C. Use of psychoacoustic spectrum warping, decision template fusion, and neighborhood component analysis in newborn cry diagnostic systems. THE JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA 2024; 155:901-914. [PMID: 38310608 DOI: 10.1121/10.0024618] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2023] [Accepted: 01/10/2024] [Indexed: 02/06/2024]
Abstract
Dealing with newborns' health is a delicate matter since they cannot express needs, and crying does not reflect their condition. Although newborn cries have been studied for various purposes, there is no prior research on distinguishing a certain pathology from other pathologies so far. Here, an unsophisticated framework is proposed for the study of septic newborns amid a collective of other pathologies. The cry was analyzed with music inspired and speech processing inspired features. Furthermore, neighborhood component analysis (NCA) feature selection was employed with two goals: (i) Exploring how the elements of each feature set contributed to classification outcome; (ii) investigating to what extent the feature space could be compacted. The attained results showed success of both experiments introduced in this study, with 88.66% for the decision template fusion (DTF) technique and a consistent enhancement in comparison to all feature sets in terms of accuracy and 86.22% for the NCA feature selection method by drastically downsizing the feature space from 86 elements to only 6 elements. The achieved results showed great potential for identifying a certain pathology from other pathologies that may have similar effects on the cry patterns as well as proving the success of the proposed framework.
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Affiliation(s)
- Zahra Khalilzad
- Department of Electrical Engineering, École de Technologie Supérieur, Université du Québec, Montréal, Québec H3C 1K3, Canada
| | - Chakib Tadj
- Department of Electrical Engineering, École de Technologie Supérieur, Université du Québec, Montréal, Québec H3C 1K3, Canada
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2
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Nazari E, Biviji R, Roshandel D, Pour R, Shahriari MH, Mehrabian A, Tabesh H. Decision fusion in healthcare and medicine: a narrative review. Mhealth 2022; 8:8. [PMID: 35178439 PMCID: PMC8800206 DOI: 10.21037/mhealth-21-15] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/01/2021] [Accepted: 08/02/2021] [Indexed: 11/06/2022] Open
Abstract
OBJECTIVE To provide an overview of the decision fusion (DF) technique and describe the applications of the technique in healthcare and medicine at prevention, diagnosis, treatment and administrative levels. BACKGROUND The rapid development of technology over the past 20 years has led to an explosion in data growth in various industries, like healthcare. Big data analysis within the healthcare systems is essential for arriving to a value-based decision over a period of time. Diversity and uncertainty in big data analytics have made it impossible to analyze data by using conventional data mining techniques and thus alternative solutions are required. DF is a form of data fusion techniques that could increase the accuracy of diagnosis and facilitate interpretation, summarization and sharing of information. METHODS We conducted a review of articles published between January 1980 and December 2020 from various databases such as Google Scholar, IEEE, PubMed, Science Direct, Scopus and web of science using the keywords decision fusion (DF), information fusion, healthcare, medicine and big data. A total of 141 articles were included in this narrative review. CONCLUSIONS Given the importance of big data analysis in reducing costs and improving the quality of healthcare; along with the potential role of DF in big data analysis, it is recommended to know the full potential of this technique including the advantages, challenges and applications of the technique before its use. Future studies should focus on describing the methodology and types of data used for its applications within the healthcare sector.
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Affiliation(s)
- Elham Nazari
- Department of Medical Informatics, Mashhad University of Medical Sciences, Mashhad, Iran
| | - Rizwana Biviji
- Science of Healthcare Delivery, College of Health Solutions, Arizona State University, Phoenix, AZ, USA
| | - Danial Roshandel
- Centre for Ophthalmology and Visual Science (affiliated with the Lions Eye Institute), The University of Western Australia, Perth, Western Australia, Australia
| | - Reza Pour
- Department of Computer Engineering, Azad University, Mashhad, Iran
| | - Mohammad Hasan Shahriari
- Department of Health Information Technology and Management, School of Allied Medical Sciences, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Amin Mehrabian
- Warwick Medical School, University of Warwick, Coventry, UK
| | - Hamed Tabesh
- Department of Medical Informatics, Mashhad University of Medical Sciences, Mashhad, Iran
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Liu Y, Zhou C, Zhang F, Zhang Q, Wang S, Zhou J, Sheng F, Wang X, Liu W, Wang Y, Yu Y, Lu G. Compare and contrast: Detecting mammographic soft-tissue lesions with C 2-Net. Med Image Anal 2021; 71:101999. [PMID: 33780707 DOI: 10.1016/j.media.2021.101999] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2020] [Revised: 07/29/2020] [Accepted: 02/02/2021] [Indexed: 10/22/2022]
Abstract
Detecting breast soft-tissue lesions including masses, structural distortions and asymmetries is of great importance due to the high risk leading to breast cancer. Most existing deep learning based approaches detect lesions with only unilateral images. However, multi-view mammogram images provide highly related and complementary information which helps to make the clinical analysis more comprehensive and reliable. In this paper, we propose a multi-view network for breast soft-tissue lesion detection called C2-Net (Compare and Contrast, C2) that fuses information across different views. The proposed model contains the following three modules. The spatial context enhancing (SCE) module compares ipsilateral views and extracts complementary features to model lesion inherent 3D structure. The multi-scale kernel pooling (MKP) module contrasts contralateral views with added misalignment tolerance. Finally, the logic guided fusion (LGF) module fuses multi-view features by enhancing logic modeling capacity. Experimental results on both the public DDSM dataset and the in-house multi-center dataset demonstrate that the proposed method has achieved state-of-the-art performance.
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Affiliation(s)
- Yuhang Liu
- AI Lab, Deepwise Healthcare, Beijing 100080, China
| | - Changsheng Zhou
- Medical Imaging Center, Nanjing Jinling Hospital Clinical School, Medical College, Nanjing University, Nanjing 210002, China
| | | | - Qianyi Zhang
- AI Lab, Deepwise Healthcare, Beijing 100080, China
| | - Siwen Wang
- AI Lab, Deepwise Healthcare, Beijing 100080, China
| | - Juan Zhou
- Department of Radiology, the Fifth Medical Centre, Chinese PLA General Hospital, Beijing 100071, China
| | - Fugeng Sheng
- Department of Radiology, the Fifth Medical Centre, Chinese PLA General Hospital, Beijing 100071, China
| | - Xiaoqi Wang
- Department of Radiology, Gansu Provincial Cancer Hospital, Lanzhou 730050, China
| | - Wanhua Liu
- Department of Radiology, Zhongda Hospital, Southeast University, Nanjing 210009, China
| | - Yizhou Wang
- Center on Frontiers of Computing Studies, Dept. of Computer Science & Technology, Advanced Institute of Information Technology, Peking University, China
| | - Yizhou Yu
- AI Lab, Deepwise Healthcare, Beijing 100080, China; Department of Computer Science, The University of Hong Kong, Pokfulam, Hong Kong.
| | - Guangming Lu
- Medical Imaging Center, Nanjing Jinling Hospital Clinical School, Medical College, Nanjing University, Nanjing 210002, China.
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Shachor Y, Greenspan H, Goldberger J. A mixture of views network with applications to multi-view medical imaging. Neurocomputing 2020. [DOI: 10.1016/j.neucom.2019.09.027] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Denham SH, Humphrey T, deLabrusse C, Dougall N. Mode of birth after caesarean section: individual prediction scores using Scottish population data. BMC Pregnancy Childbirth 2019; 19:84. [PMID: 30819140 PMCID: PMC6396527 DOI: 10.1186/s12884-019-2226-6] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2018] [Accepted: 02/19/2019] [Indexed: 11/30/2022] Open
Abstract
Background Rising caesarean section (CS) rates are a global health concern. Contemporary data indicates that almost 50% of CS are electively performed, with a high proportion of these being a repeat procedure. Vaginal birth after caesarean (VBAC) is recognised as a safe way to give birth in developed countries. UK national maternity policy and worldwide professional guidance supports shared decision-making about mode of birth with women following CS. Evidence suggests that women want individualised information, particularly about their likeilihood of successful VBAC, to enable them to participate in the decision making process. This study aimed to identify characteristics that could inform a predictive model which would allow women to receive personalised and clinically specific information about their likelihood of achieving a successful VBAC in subsequent pregnancies. Methods An observational study using anonymised clinical data extracted from a detailed, comprehensive socio-demographic and clinical dataset. All women who attempted a singleton term VBAC between 2000 and 2012 were included. Data were analysed using both logistic regression and Bayesian statistical techniques to identify clinical and demographic variables predictive of successful VBAC. Results Variables significantly associated with VBAC were: ethnicity (p = 0.011), maternal obstetric complications (p < 0.001), previous vaginal birth (p = < 0.001), antepartum haemorrhage (p = 0.005), pre-pregnancy BMI (p < 0.001) and a previous second stage CS (p < 0.001). Conclusions By using current literature, expert clinical opinion and having access to clinically detailed variables, this study has identified a new significant characteristic. Women who had a previous CS in the second stage of labour are more likely to have a successful VBAC. This predictor may have international significance for women and clinicians in shared VBAC decision-making. Further research is planned to validate this model on a larger national sample leading to further development of the nomogram tool developed in this study for use in clinical practice to assist women and clinicians in the decision-making process about mode of birth after CS.
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Affiliation(s)
- Sara Helen Denham
- School of Health and Social Care, Edinburgh Napier University, Sighthill Campus, Edinburgh, EH11 4BN, UK.
| | - Tracy Humphrey
- School of Health and Social Care, Edinburgh Napier University, Sighthill Campus, Edinburgh, EH11 4BN, UK
| | - Claire deLabrusse
- School of Health Sciences (HESAV) Midwifery Department, University of Applied Sciences and Arts Western Switzerland, Lausanne, Switzerland
| | - Nadine Dougall
- School of Health and Social Care, Edinburgh Napier University, Sighthill Campus, Edinburgh, EH11 4BN, UK
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Amirkhani H, Rahmati M, Lucas PJF, Hommersom A. Exploiting Experts' Knowledge for Structure Learning of Bayesian Networks. IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE 2017; 39:2154-2170. [PMID: 28114005 DOI: 10.1109/tpami.2016.2636828] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Learning Bayesian network structures from data is known to be hard, mainly because the number of candidate graphs is super-exponential in the number of variables. Furthermore, using observational data alone, the true causal graph is not discernible from other graphs that model the same set of conditional independencies. In this paper, it is investigated whether Bayesian network structure learning can be improved by exploiting the opinions of multiple domain experts regarding cause-effect relationships. In practice, experts have different individual probabilities of correctly labeling the inclusion or exclusion of edges in the structure. The accuracy of each expert is modeled by three parameters. Two new scoring functions are introduced that score each candidate graph based on the data and experts' opinions, taking into account their accuracy parameters. In the first scoring function, the experts' accuracies are estimated using an expectation-maximization-based algorithm and the estimated accuracies are explicitly used in the scoring process. The second function marginalizes out the accuracy parameters to obtain more robust scores when it is not possible to obtain a good estimate of experts' accuracies. The experimental results on simulated and real world datasets show that exploiting experts' knowledge can improve the structure learning if we take the experts' accuracies into account.
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Casti P, Mencattini A, Salmeri M, Ancona A, Lorusso M, Pepe ML, Natale CD, Martinelli E. Towards localization of malignant sites of asymmetry across bilateral mammograms. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2017; 140:11-18. [PMID: 28254066 DOI: 10.1016/j.cmpb.2016.11.010] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2016] [Revised: 10/17/2016] [Accepted: 11/23/2016] [Indexed: 06/06/2023]
Abstract
BACKGROUND AND OBJECTIVES The analysis of patterns of asymmetry between the left and right mammograms of a patient can provide meaningful insights into the presence of an underlying tumor in its early stage. However, the identification of breast cancer by investigating bilateral asymmetry is difficult to perform due to the indistinct and borderline nature of the asymmetric signs as they appear on mammograms. METHODS In this study, to increase the positive-predictive value of asymmetry in mammographic screening, a novel computerized approach for the automatic localization of malignant sites of asymmetry in mammograms is proposed. The sites of anatomical correspondence between the right and left regions of each radiographic projection were extracted by means of two bilateral masking procedures, inspired by radiologists' criteria in interpreting mammograms and based on the use of detected landmarking structures. Relative variations of spatial patterns of intensity values and of orientations of directional components within each site were quantified by combining multidirectional Gabor filters and indices of structural similarity. The localization of the sites of malignant asymmetry was performed by coupling two quadratic discriminant analysis classifiers, one for each masking procedure, that assigned the likelihood of malignancy to each site of correspondence. RESULTS The performance of the proposed method was assessed on 94 mammographic images from two publicly available databases and containing at least one asymmetric site. Sensitivity, specificity and balanced accuracy levels of 0.83 (0.09), 0.75 (0.06), and 0.79 (0.04), respectively were obtained in the classification of malignant asymmetric sites vs benign/normal sites using cross-validation. In addition, a further blind test on a dataset of Full Field Digital Mammograms achieved levels of sensitivity, specificity, and balanced accuracy of 0.86, 0.65, and 0.75, respectively. CONCLUSIONS The achieved performance indicates that the proposed system is effective in localizing sites of malignant asymmetry and it is expected to improve computer-aided diagnosis of breast cancer.
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Affiliation(s)
- P Casti
- University of Rome Tor Vergata, Via del Politecnico 1, Rome 00133, Italy
| | - A Mencattini
- University of Rome Tor Vergata, Via del Politecnico 1, Rome 00133, Italy.
| | - M Salmeri
- University of Rome Tor Vergata, Via del Politecnico 1, Rome 00133, Italy
| | - A Ancona
- Radiology Unit, San Paolo Hospital of Bari, Bari, Italy
| | - M Lorusso
- Radiology Unit, San Paolo Hospital of Bari, Bari, Italy
| | - M L Pepe
- S.C. di Diagnostica per Immagini, P.O. Occidentale, Castellaneta-Massafra-Mottola, Azienda Unitá Sanitaria Locale, Taranto, Italy
| | - C Di Natale
- University of Rome Tor Vergata, Via del Politecnico 1, Rome 00133, Italy
| | - E Martinelli
- University of Rome Tor Vergata, Via del Politecnico 1, Rome 00133, Italy
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Bekker AJ, Shalhon M, Greenspan H, Goldberger J. Multi-View Probabilistic Classification of Breast Microcalcifications. IEEE TRANSACTIONS ON MEDICAL IMAGING 2016; 35:645-53. [PMID: 26452277 DOI: 10.1109/tmi.2015.2488019] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Classification of clustered breast microcalcifications into benign and malignant categories is an extremely challenging task for computerized algorithms and expert radiologists alike. In this paper we apply a multi-view-classifier for the task. We describe a two-step classification method that is based on a view-level decision, implemented by a logistic regression classifier, followed by a stochastic combination of the two view-level indications into a single benign or malignant decision. The proposed method was evaluated on a large number of cases from a standardized digital database for screening mammography (DDSM). Experimental results demonstrate the advantage of the proposed multi-view classification algorithm that automatically learns the best way to combine the views.
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Velikova M, van Scheltinga JT, Lucas PJ, Spaanderman M. Exploiting causal functional relationships in Bayesian network modelling for personalised healthcare. Int J Approx Reason 2014. [DOI: 10.1016/j.ijar.2013.03.016] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Tanner C, van Schie G, Lesniak JM, Karssemeijer N, Székely G. Improved location features for linkage of regions across ipsilateral mammograms. Med Image Anal 2013; 17:1265-72. [DOI: 10.1016/j.media.2013.05.001] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2012] [Revised: 04/26/2013] [Accepted: 05/02/2013] [Indexed: 11/17/2022]
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Giger ML, Karssemeijer N, Schnabel JA. Breast image analysis for risk assessment, detection, diagnosis, and treatment of cancer. Annu Rev Biomed Eng 2013; 15:327-57. [PMID: 23683087 DOI: 10.1146/annurev-bioeng-071812-152416] [Citation(s) in RCA: 118] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
The role of breast image analysis in radiologists' interpretation tasks in cancer risk assessment, detection, diagnosis, and treatment continues to expand. Breast image analysis methods include segmentation, feature extraction techniques, classifier design, biomechanical modeling, image registration, motion correction, and rigorous methods of evaluation. We present a review of the current status of these task-based image analysis methods, which are being developed for the various image acquisition modalities of mammography, tomosynthesis, computed tomography, ultrasound, and magnetic resonance imaging. Depending on the task, image-based biomarkers from such quantitative image analysis may include morphological, textural, and kinetic characteristics and may depend on accurate modeling and registration of the breast images. We conclude with a discussion of future directions.
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Affiliation(s)
- Maryellen L Giger
- Department of Radiology, University of Chicago, Chicago, IL 60637, USA.
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J Abramowicz A, A Daubert M, Malhotra V, Ferraro S, Ring J, Goldenberg R, Kam M, Wu H, Kam D, Minton A, Poon M. Computer-aided analysis of 64-slice coronary computed tomography angiography: a comparison with manual interpretation. Heart Int 2013; 8:e2. [PMID: 24179636 PMCID: PMC3805166 DOI: 10.4081/hi.2013.e2] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2012] [Accepted: 10/22/2012] [Indexed: 11/24/2022] Open
Abstract
Coronary computed tomography angiography (CCTA) is increasingly used for the assessment of coronary heart disease (CHD) in symptomatic patients. Software applications have recently been developed to facilitate efficient and accurate analysis of CCTA. This study aims to evaluate the clinical application of computer-aided diagnosis (CAD) software for the detection of significant coronary stenosis on CCTA in populations with low (8%), moderate (13%), and high (27%) CHD prevalence. A total of 341 consecutive patients underwent 64-slice CCTA at 3 clinical sites in the United States. CAD software performed automatic detection of significant coronary lesions (>50% stenosis). CAD results were then compared to the consensus manual interpretation of 2 imaging experts. Data analysis was conducted for each patient and segment. The CAD had 100% sensitivity per patient across all 3 clinical sites. Specificity in the low, moderate, and high CHD prevalence populations was 64%, 41%, and 38%, respectively. The negative predictive value at the 3 clinical sites was 100%. The positive predictive value was 22%, 21%, and 38% for the low, moderate, and high CHD prevalence populations, respectively. This study demonstrates the utility of CAD software in 3 distinct clinical settings. In a low-prevalence population, such as seen in the emergency department, CAD can be used as a Computer-Aided Simple Triage tool to assist in diagnostic delineation of acute chest pain. In a higher prevalence population, CAD software is useful as an adjunct for both the experienced and inexperienced reader.
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Velikova M, Lucas PJ, Samulski M, Karssemeijer N. On the interplay of machine learning and background knowledge in image interpretation by Bayesian networks. Artif Intell Med 2013; 57:73-86. [DOI: 10.1016/j.artmed.2012.12.004] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2012] [Revised: 10/26/2012] [Accepted: 12/08/2012] [Indexed: 11/29/2022]
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