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Kuchař M, Pilmann Kotěrová A, Morávek A, Santos F, Harnádková K, Henyš P, Cunha E, Brůžek J. Automatic variable extraction from 3D coxal bone models for sex estimation using the DSP2 method. Int J Legal Med 2024; 138:2647-2658. [PMID: 39102091 PMCID: PMC11490455 DOI: 10.1007/s00414-024-03301-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2024] [Accepted: 07/20/2024] [Indexed: 08/06/2024]
Abstract
Thanks to technical progress and the availability of virtual data, sex estimation methods as part of a biological profile are undergoing an inevitable evolution. Further reductions in subjectivity, but potentially also in measurement errors, can be brought by approaches that automate the extraction of variables. Such automatization also significantly accelerates and facilitates the specialist's work. The aim of this study is (1) to apply a previously proposed algorithm (Kuchař et al. 2021) to automatically extract 10 variables used for the DSP2 sex estimation method, and (2) to test the robustness of the new automatic approach in a current heterogeneous population. For the first aim, we used a sample of 240 3D scans of pelvic bones from the same individuals, which were measured manually for the DSP database. For the second aim a sample of 108 pelvic bones from the New Mexico Decedent Image Database was used. The results showed high agreement between automatic and manual measurements with rTEM below 5% for all dimensions except two. The accuracy of final sex estimates based on all 10 variables was excellent (error rate 0.3%). However, we observed a higher number of undetermined individuals in the Portuguese sample (25% of males) and the New Mexican sample (36.5% of females). In conclusion, the procedure for automatic dimension extraction was successfully applied both to a different type of data and to a heterogeneous population.
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Affiliation(s)
- Michal Kuchař
- Department of Anatomy, Faculty of Medicine in Hradec Králové, Charles University, Šimkova, 870, Hradec Králové, 500 03, Czech Republic
| | - Anežka Pilmann Kotěrová
- Department of Anthropology and Human Genetics, Faculty of Science, Charles University, Viničná 7, Prague 2, 128 44, Czech Republic
| | - Alexander Morávek
- Department of Anatomy, Faculty of Medicine in Hradec Králové, Charles University, Šimkova, 870, Hradec Králové, 500 03, Czech Republic
| | - Frédéric Santos
- CNRS, Univ. Bordeaux, MCC - UMR 5199 PACEA. Bâtiment B8, Allée Geoffroy Saint Hilaire, Pessac Cedex, CS 50023, 33615, France
| | - Katarína Harnádková
- Department of Anthropology and Human Genetics, Faculty of Science, Charles University, Viničná 7, Prague 2, 128 44, Czech Republic
| | - Petr Henyš
- Institute of New Technologies and Applied Informatics, Faculty of Mechatronics, Informatics and Interdisciplinary Studies, Technical University of Liberec, Studentská 1402/2, Liberec, 461 17, Czech Republic.
| | - Eugénia Cunha
- Department of Life Sciences, Centre for Functional Ecology (CFE), Laboratory of Forensic Anthropology, University of Coimbra, Calçada Martim de Freitas, Coimbra, 3000-456, Portugal
- Instituto Nacional de Medicina Legal e Ciências Forenses, IP., Lisboa, Portugal
| | - Jaroslav Brůžek
- Department of Anthropology and Human Genetics, Faculty of Science, Charles University, Viničná 7, Prague 2, 128 44, Czech Republic
- CNRS, Univ. Bordeaux, MCC - UMR 5199 PACEA. Bâtiment B8, Allée Geoffroy Saint Hilaire, Pessac Cedex, CS 50023, 33615, France
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Warrier V, San-Millán M. A statistical evaluation of the sexual dimorphism of the acetabulum in an Iberian population. Int J Legal Med 2024:10.1007/s00414-024-03334-9. [PMID: 39327330 DOI: 10.1007/s00414-024-03334-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2024] [Accepted: 09/13/2024] [Indexed: 09/28/2024]
Abstract
Sex estimation is essential for human identification within bioarchaeological and medico-legal contexts. Amongst the sexually dimorphic skeletal elements commonly utilised for this purpose, the pelvis is usually preferred because of its direct relationship with reproduction. Furthermore, the posterior part of the innominate bone has proven to have better preservation within degraded contexts. With the aim of investigating the potential of the vertical acetabular diameter as a sex marker, 668 documented individuals from three different Iberian skeletal collections were randomly divided into training and test samples and eventually analysed using different statistical approaches. Two traditional (Discriminant Function Analysis and Logistic Regression Analysis) and four Machine learning methodologies (Support Vector Classification, Decision Tree Classification, k Nearest Neighbour Classification, and Neural Networks) were performed and compared. Amongst these statistical modalities, Machine Learning methodologies yielded better accuracy outcomes, with DTC garnering highest accuracy percentages of 83.59% and 89.85% with the sex-pooled and female samples, respectively. With males, ANN yielded highest accuracy percentage of 87.70%, when compared to other statistical approaches. Higher accuracy obtained with ML, along with its minimal statistical assumptions, warrant these approaches to be increasingly utilised for further investigations involving sex estimation and human identification. In this line, the creation of a statistical platform with easier user interface can render such robust statistical modalities accessible to researchers and practitioners, effectively maximising its practical use. Future investigations should attempt to achieve this goal, alongside examining the influence of factors such as age, on the obtained accuracy outcomes.
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Affiliation(s)
- Varsha Warrier
- School of Sciences, College of Science and Engineering, University of Derby, Derby, UK
| | - Marta San-Millán
- Medical Sciences Department, Clinical Anatomy, Embriology and Neuroscience Research Group (NEOMA), Faculty of Medicine, University of Girona, Girona, Spain.
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Kuchař M, Henyš P, Rejtar P, Hájek P. Shape morphing technique can accurately predict pelvic bone landmarks. Int J Legal Med 2021; 135:1617-1626. [PMID: 33502550 DOI: 10.1007/s00414-021-02501-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2020] [Accepted: 01/04/2021] [Indexed: 11/30/2022]
Abstract
Diffeomorphic shape registration allows for the seamless geometric alignment of shapes. In this study, we demonstrated the use of a registration algorithm to automatically seed anthropological landmarks on the CT images of the pelvis. We found a high correlation between manually and automatically seeded landmarks. The registration algorithm makes it possible to achieve a high degree of automation with the potential to reduce operator errors in the seeding of anthropological landmarks. The results of this study represent a promising step forward in effectively defining the anthropological measures of the human skeleton.
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Affiliation(s)
- Michal Kuchař
- Department of Anatomy, Faculty of Medicine in Hradec Králové, Charles University, Šimkova 870, 500 03, Hradec Králové, Czech Republic
| | - Petr Henyš
- Institute of New Technologies and Applied Informatics, Faculty of Mechatronics, Informatics and Interdisciplinary Studies, Technical University of Liberec, Studentská 1402/2, 461 17, Liberec, Czech Republic.
| | - Pavel Rejtar
- Department of Radiology, University Hospital Hradec Králové, Sokolská 581, 500 05, Hradec Králové, Czech Republic
| | - Petr Hájek
- Department of Anatomy, Faculty of Medicine in Hradec Králové, Charles University, Šimkova 870, 500 03, Hradec Králové, Czech Republic
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Garoufi N, Bertsatos A, Chovalopoulou ME, Villa C. Forensic sex estimation using the vertebrae: an evaluation on two European populations. Int J Legal Med 2020; 134:2307-2318. [PMID: 32940842 DOI: 10.1007/s00414-020-02430-w] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Accepted: 09/11/2020] [Indexed: 11/30/2022]
Abstract
Sex estimation is one of the primary steps for constructing the biological profile of skeletal remains leading to their identification in the forensic context. While the pelvis is the most sex diagnostic bone, the cranium and other post-cranial elements have been extensively studied. Earlier research has also focused on the vertebral column with varying results regarding its sex classification accuracy as well as the underlying population specificity. The present study focuses on three easily identifiable vertebrae, namely T1, T12, and L1, and utilizes two modern European populations, a Greek and a Danish, to evaluate their forensic utility in sex identification. To this end, 865 vertebrae from 339 individuals have been analyzed for sexual dimorphism by further evaluating the effects of age-at-death and population affinity on its expression. Our results show that T1 is the best sex diagnostic vertebra for both populations reaching cross-validated accuracy of almost 90%, while age-at-death has limited effect on its sexual dimorphism. On the contrary, T12 and L1 produced varying results ranging from 75 to 83% accuracy with the Greek population exhibiting distinctively more pronounced sexual dimorphism. Additionally, age-at-death had significant effect on sexual dimorphism of T12 and L1 and especially in the Greek female and Danish male groups. Our results on inter-population comparison suggest that vertebral sex discriminant functions, and especially those utilizing multiple measurements, are highly population specific and optimally suitable only for their targeted population. An open-source software tool to facilitate classifying new cases based on our results is made freely available to forensic researchers.
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Affiliation(s)
- Nefeli Garoufi
- Department of Animal and Human Physiology, Faculty of Biology, School of Sciences, University of Athens, Panepistimiopolis, GR 157 01, Athens, Greece.
| | - Andreas Bertsatos
- Department of Animal and Human Physiology, Faculty of Biology, School of Sciences, University of Athens, Panepistimiopolis, GR 157 01, Athens, Greece
| | - Maria-Eleni Chovalopoulou
- Department of Animal and Human Physiology, Faculty of Biology, School of Sciences, University of Athens, Panepistimiopolis, GR 157 01, Athens, Greece
- Science and Technology in Archaeology and Culture Research Center, The Cyprus Institute, 2121, Aglantzia, Nicosia, Cyprus
| | - Chiara Villa
- Laboratory of Advanced Imaging and 3D Modelling Section of Forensic Pathology, Department of Forensic Medicine, University of Copenhagen, Copenhagen, Denmark
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Jerković I, Bašić Ž, Anđelinović Š, Kružić I. Adjusting posterior probabilities to meet predefined accuracy criteria: A proposal for a novel approach to osteometric sex estimation. Forensic Sci Int 2020; 311:110273. [PMID: 32272305 DOI: 10.1016/j.forsciint.2020.110273] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2020] [Revised: 03/19/2020] [Accepted: 03/25/2020] [Indexed: 11/29/2022]
Abstract
The osteometric methods are the most reliable way to estimate the sex of skeletons when DNA analysis is not used. However, as osteometric studies usually ignore the overlap in male and female skeletal dimensions, they rarely achieve accuracy sufficient for forensic application. To resolve this issue, recent studies suggest sex estimation only when posterior probability (pp) is greater than 0.95, but that approach does not always provide sufficient accuracy and creates a large proportion of unsexed skeleton. Thus, our study aimed to explore whether it is possible to adjust pp on skeletal measurements with pronounced sexual dimorphism to meet 95% accuracy and to enable sex estimation on a reasonable proportion of individuals. From 207 skeletons, we included 65 postcranial measurements and selected 10% of variables with the highest sexual dimorphism. We computed univariate and bivariate discriminant functions using pp threshold of 0.5, 0.95, and the threshold required to achieve accuracy of ≥ 95%. Discriminant functions with pp=0.5 obtained accuracy of 85%-93%, while those with pp≥0.95 and adjusted posterior probabilities obtained 94%-99%. However, we showed that by selecting a particular threshold, sex could be estimated on a greater proportion of individuals than for pp≥0.95: 42%-86% vs. 24%-62% for univariate and 69%-95% vs. 49%-78% for bivariate functions. Therefore, when developing sex estimation models, we suggest not to use fixed pp level, but to adjust pp to achieve 95% accuracy and to minimize the percentage of unsexed skeletons.
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Affiliation(s)
- Ivan Jerković
- University Department of Forensic Sciences, University of Split, Ruđera Boškovića 33, 21000 Split, Croatia
| | - Željana Bašić
- University Department of Forensic Sciences, University of Split, Ruđera Boškovića 33, 21000 Split, Croatia.
| | - Šimun Anđelinović
- University of Split, School of Medicine, Šoltanska 2, 21000 Split, Croatia; Clinical Department for Pathology, Legal Medicine and Cytology, University Hospital Center Split, Spinčićeva 1, 21000 Split, Croatia
| | - Ivana Kružić
- University Department of Forensic Sciences, University of Split, Ruđera Boškovića 33, 21000 Split, Croatia
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