Depression diagnosis by deep learning using EEG signals: A systematic review

Machine-Learning-Based Depression Detection Model from Electroencephalograph (EEG) Data Obtained by Consumer-Grade EEG Device

Background/Objectives: There have been attempts to detect depression using medical-grade electroencephalograph (EEG) data based on a machine learning approach. EEG has garnered interest as a method for assessing brainwaves by attaching electrodes to the scalp to obtain electrical activity in the brain. Recently, machine learning has been applied to the EEG data to detect depression, with encouraging results. Specifically, studies using medical-grade EEG data have shown that depression can be accurately detected. However, there is a need to expand the range of applications by achieving a score with machine learning using simpler consumer-grade brain wave sensors. At present, a sufficient score has not been achieved.; Methods: To improve the score of depression detection, we quantified various EEG indices to train models such as power spectrum, asymmetry, complexity, and functional connectivity. In addition, feature selection was performed to ensure that the model learns only promising EEG indices for depression detection. The feature selection methods were Light Gradient Boosting Machine (LightGBM) feature importance, mutual information, ReliefF and ElasticNet coefficients. The selected EEG indices were learned by the LightGBM model, which is reported to be as accurate as the latest deep learning models. In cross-validation, the independence of test and training data was ensured to avoid excessively calculated score; Results: The results showed that the Macro F1 score was 91.59%, suggesting that a consumer-grade EEG can detect depression. In addition, analysis of the EEG indices selected by feature selection indicated that the Macro F1 score was about 80% for single EEG indices such as differential entropy in the frequency band β and functional connectivity in the left frontal region in the frequency band 1-128 Hz; Conclusions: Although the data were obtained from a consumer-grade EEG, the results suggest that these EEG indices are promising for detection depression.

EEG-based Signatures of Schizophrenia, Depression, and Aberrant Aging: A Supervised Machine Learning Investigation

BACKGROUND

Electroencephalography (EEG) is a noninvasive, cost-effective, and robust tool, which directly measures in vivo neuronal mass activity with high temporal resolution. Combined with state-of-the-art machine learning (ML) techniques, EEG recordings could potentially yield in silico biomarkers of severe mental disorders.

HYPOTHESIS

Pathological and physiological aging processes influence the electrophysiological signatures of schizophrenia (SCZ) and major depressive disorder (MDD).

STUDY DESIGN

From a single-center cohort (N = 735, 51.6% male) comprising healthy control individuals (HC, N = 245) and inpatients suffering from SCZ (N = 250) or MDD (N = 240), we acquired resting-state 19 channel-EEG recordings. Using repeated nested cross-validation, support vector machine models were trained to (1) classify patients with SCZ or MDD and HC individuals and (2) predict age in HC individuals. The age model was applied to patient groups to calculate Electrophysiological Age Gap Estimation (EphysAGE) as the difference between predicted and chronological age. The links between EphysAGE, diagnosis, and medication were then further explored.

STUDY RESULTS

The classification models robustly discriminated SCZ from HC (balanced accuracy, BAC = 72.7%, P < .001), MDD from HC (BAC = 67.0%, P < .001), and SCZ from MDD individuals (BAC = 63.2%, P < .001). Notably, central alpha (8-11 Hz) power decrease was the most consistently predictive feature for SCZ and MDD. Higher EphysAGE was associated with an increased likelihood of being misclassified as SCZ in HC and MDD (ρHC = 0.23, P < .001; ρMDD = 0.17, P = .01).

CONCLUSIONS

ML models can extract electrophysiological signatures of MDD and SCZ for potential clinical use. However, the impact of aging processes on diagnostic separability calls for timely application of such models, possibly in early recognition settings.

Deep Learning-Based Artificial Intelligence Can Differentiate Treatment-Resistant and Responsive Depression Cases with High Accuracy

Background: Although there are many treatment options available for depression, a large portion of patients with depression are diagnosed with treatment-resistant depression (TRD), which is characterized by an inadequate response to antidepressant treatment. Identifying the TRD population is crucial in terms of saving time and resources in depression treatment. Recently several studies employed various methods on EEG datasets for automatic depression detection or treatment outcome prediction. However, no previous study has used the deep learning (DL) approach and EEG signals for detecting treatment resistance. Method: 77 patients with TRD, 43 patients with non-TRD, and 40 healthy controls were compared using GoogleNet convolutional neural network and DL on EEG data. Additionally, Class Activation Maps (CAMs) acquired from the TRD and non-TRD groups were used to obtain distinctive regions for classification. Results: GoogleNet classified the healthy controls and non-TRD group with 88.43%, the healthy controls and TRD subjects with 89.73%, and the TRD and non-TRD group with 90.05% accuracy. The external validation accuracy for the TRD-non-TRD classification was 73.33%. Finally, the CAM analysis revealed that the TRD group contained dominant features in class detection of deep learning architecture in almost all electrodes. Limitations: Our study is limited by the moderate sample size of clinical groups and the retrospective nature of the study. Conclusion: These findings suggest that EEG-based deep learning can be used to classify treatment resistance in depression and may in the future prove to be a useful tool in psychiatry practice to identify patients who need more vigorous intervention.

Prediction of treatment response in major depressive disorder using a hybrid of convolutional recurrent deep neural networks and effective connectivity based on EEG signal

In this study, we have developed a novel method based on deep learning and brain effective connectivity to classify responders and non-responders to selective serotonin reuptake inhibitors (SSRIs) antidepressants in major depressive disorder (MDD) patients prior to the treatment using EEG signal. The effective connectivity of 30 MDD patients was determined by analyzing their pretreatment EEG signals, which were then concatenated into delta, theta, alpha, and beta bands and transformed into images. Using these images, we then fine tuned a hybrid Convolutional Neural Network that is enhanced with bidirectional Long Short-Term Memory cells based on transfer learning. The Inception-v3, ResNet18, DenseNet121, and EfficientNet-B0 models are implemented as base models. Finally, the models are followed by BiLSTM and dense layers in order to classify responders and non-responders to SSRI treatment. Results showed that the EfficiencyNet-B0 has the highest accuracy of 98.33, followed by DensNet121, ResNet18 and Inception-v3. Therefore, a new method was proposed in this study that uses deep learning models to extract both spatial and temporal features automatically, which will improve classification results. The proposed method provides accurate identification of MDD patients who are responding, thereby reducing the cost of medical facilities and patient care.

Efficacy of novel attention-based gated recurrent units transformer for depression detection using electroencephalogram signals

Purpose

Depression is a global challenge causing psychological and intellectual problems that require efficient diagnosis. Electroencephalogram (EEG) signals represent the functional state of the human brain and can help build an accurate and viable technique for the early prediction and treatment of depression.

Methods

An attention-based gated recurrent units transformer (AttGRUT) time-series model is proposed to efficiently identify EEG perturbations in depressive patients. Statistical, spectral and wavelet features were first extracted from the 60-channel EEG signal data. Then, two feature selection techniques, recursive feature elimination and the Boruta algorithm, both with Shapley additive explanations, were utilised for selecting essential features.

Results

The proposed model outperformed the two baseline and two hybrid time-series models-long short-term memory (LSTM), gated recurrent units (GRU), convolutional neural network-LSTM (CNN-LSTM), and CNN-GRU-achieving an accuracy of up to 98.67%. Feature selection considerably increased the performance across all time-series models.

Conclusion

Based on the obtained results, novel feature selection greatly affected the results of the baseline and hybrid time-series models. The proposed AttGRUT can be implemented and tested in other domains by using different modalities for prediction.

Supplementary Information

The online version contains supplementary material available at 10.1007/s13755-022-00205-8.

Brainwave activities reflecting depressed mood: a pilot study

Early diagnosis and treatment of depression are desirable but currently difficult due to a lack of established biomarkers. Although biomarkers for depression based on electroencephalogram (EEG) data have long been explored, most existing methods are thought to capture cognitive decline caused by depression and are unsuccessful in detecting signs of depression. Here we report that some brainwave activities involving phase resetting reflect the depressed mood at the time, which can be easily monitored by measuring the resting EEG with eyes closed for 1 min with a few electrodes. We instructed 10 participants (nine healthy and one diagnosed with depression, aged 18-34) to record their EEG for 14-26 days. We found that indicators of depressed mood were correlated with the occurrence frequency of EEG phase resetting. For most participants, the correlation coefficients swung systematically between large positive and large negative values with respect to EEG frequency; however, the frequencies at which they were maximum or minimum differed among participants. Although this study is in the pilot phase and needs further experimentation, the results are expected to lead to innovative biomarkers for early detection of depression and may contribute to a better understanding and treatment of depression.

Determining human-coronavirus protein-protein interaction using machine intelligence

The Severe Acute Respiratory Syndrome CoronaVirus 2 (SARS-CoV-2) virus spread the novel CoronaVirus -19 (nCoV-19) pandemic, resulting in millions of fatalities globally. Recent research demonstrated that the Protein-Protein Interaction (PPI) between SARS-CoV-2 and human proteins is accountable for viral pathogenesis. However, many of these PPIs are poorly understood and unexplored, necessitating a more in-depth investigation to find latent yet critical interactions. This article elucidates the host-viral PPI through Machine Learning (ML) lenses and validates the biological significance of the same using web-based tools. ML classifiers are designed based on comprehensive datasets with five sequence-based features of human proteins, namely Amino Acid Composition, Pseudo Amino Acid Composition, Conjoint Triad, Dipeptide Composition, and Normalized Auto Correlation. A majority voting rule-based ensemble method composed of the Random Forest Model (RFM), AdaBoost, and Bagging technique is proposed that delivers encouraging statistical performance compared to other models employed in this work. The proposed ensemble model predicted a total of 111 possible SARS-CoV-2 human target proteins with a high likelihood factor ≥70%, validated by utilizing Gene Ontology (GO) and KEGG pathway enrichment analysis. Consequently, this research can aid in a deeper understanding of the molecular mechanisms underlying viral pathogenesis and provide clues for developing more efficient anti-COVID medications.

Electroencephalography-Based Depression Detection Using Multiple Machine Learning Techniques

The growth of biomedical engineering has made depression diagnosis via electroencephalography (EEG) a trendy issue. The two significant challenges to this application are EEG signals' complexity and non-stationarity. Additionally, the effects caused by individual variances may hamper the generalization of detection systems. Given the association between EEG signals and particular demographics, such as gender and age, and the influences of these demographic characteristics on the incidence of depression, it would be preferable to include demographic factors during EEG modeling and depression detection. The main objective of this work is to develop an algorithm that can recognize depression patterns by studying EEG data. Following a multiband analysis of such signals, machine learning and deep learning techniques were used to detect depression patients automatically. EEG signal data are collected from the multi-modal open dataset MODMA and employed in studying mental diseases. The EEG dataset contains information from a traditional 128-electrode elastic cap and a cutting-edge wearable 3-electrode EEG collector for widespread applications. In this project, resting EEG readings of 128 channels are considered. According to CNN, training with 25 epoch iterations had a 97% accuracy rate. The patient's status has to be divided into two basic categories: major depressive disorder (MDD) and healthy control. Additional MDD include the following six classes: obsessive-compulsive disorders, addiction disorders, conditions brought on by trauma and stress, mood disorders, schizophrenia, and the anxiety disorders discussed in this paper are a few examples of mental illnesses. According to the study, a natural combination of EEG signals and demographic data is promising for the diagnosis of depression.

Assessment of Model Accuracy in Eyes Open and Closed EEG Data: Effect of Data Pre-Processing and Validation Methods

Eyes open and eyes closed data is often used to validate novel human brain activity classification methods. The cross-validation of models trained on minimally preprocessed data is frequently utilized, regardless of electroencephalography data comprised of data resulting from muscle activity and environmental noise, affecting classification accuracy. Moreover, electroencephalography data of a single subject is often divided into smaller parts, due to limited availability of large datasets. The most frequently used method for model validation is cross-validation, even though the results may be affected by overfitting to the specifics of brain activity of limited subjects. To test the effects of preprocessing and classifier validation on classification accuracy, we tested fourteen classification algorithms implemented in WEKA and MATLAB, tested on comprehensively and simply preprocessed electroencephalography data. Hold-out and cross-validation were used to compare the classification accuracy of eyes open and closed data. The data of 50 subjects, with four minutes of data with eyes closed and open each was used. The algorithms trained on simply preprocessed data were superior to the ones trained on comprehensively preprocessed data in cross-validation testing. The reverse was true when hold-out accuracy was examined. Significant increases in hold-out accuracy were observed if the data of different subjects was not strictly separated between the test and training datasets, showing the presence of overfitting. The results show that comprehensive data preprocessing can be advantageous for subject invariant classification, while higher subject-specific accuracy can be attained with simple preprocessing. Researchers should thus state the final intended use of their classifier.

A Machine Learning Algorithm to Discriminating Between Bipolar and Major Depressive Disorders Based on Resting EEG Data

Distinguishing major depressive disorder (MDD) from bipolar disorder (BD) is a crucial clinical challenge due to the lack of known biomarkers. Conventional methods of diagnosis rest exclusively on symptomatic presentation, and personal and family history. As a result, BD-depressed episode (BD-DE) is often misdiagnosed as MDD, and inappropriate therapy is given. Electroencephalography (EEG) has been widely studied as a potential source of biomarkers to differentiate these disorders. Previous attempts using machine learning (ML) methods have delivered insufficient sensitivity and specificity for clinical use, likely as a consequence of the small training set size, and inadequate ML methodology. We hope to overcome these limitations by employing a training dataset of resting-state EEG from 71 MDD and 71 BD patients. We introduce a robust 3 steps ML technique: 1) a multi-step preprocessing method is used to improve the quality of the EEG signal 2) symbolic transfer entropy (STE), which is an effective connectivity measure, is applied to the resultant EEG signals 3) the ML algorithm uses the extracted STE features to distinguish MDD from BD patients. Clinical Relevance--- The accuracy of our algorithm, derived from a large sample of patients, suggests that this method may hold significant promise as a clinical tool. The proposed method delivered total accuracy, sensitivity, and specificity of 84.9%, 83.4%, and 87.1%, respectively.

Utility of Cognitive Neural Features for Predicting Mental Health Behaviors

Cognitive dysfunction underlies common mental health behavioral symptoms including depression, anxiety, inattention, and hyperactivity. In this study of 97 healthy adults, we aimed to classify healthy vs. mild-to-moderate self-reported symptoms of each disorder using cognitive neural markers measured with an electroencephalography (EEG). We analyzed source-reconstructed EEG data for event-related spectral perturbations in the theta, alpha, and beta frequency bands in five tasks, a selective attention and response inhibition task, a visuospatial working memory task, a Flanker interference processing task, and an emotion interference task. From the cortical source activation features, we derived augmented features involving co-activations between any two sources. Logistic regression on the augmented feature set, but not the original feature set, predicted the presence of psychiatric symptoms, particularly for anxiety and inattention with >80% sensitivity and specificity. We also computed current flow closeness and betweenness centralities to identify the “hub” source signal predictors. We found that the Flanker interference processing task was the most useful for assessing the connectivity hubs in general, followed by the inhibitory control go-nogo paradigm. Overall, these interpretable machine learning analyses suggest that EEG biomarkers collected on a rapid suite of cognitive assessments may have utility in classifying diverse self-reported mental health symptoms.