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Niu Z, Yang Z, Sun S, Zeng Z, Han Q, Wu L, Bai J, Li H, Xia H. Clinical analysis of the efficacy of radiation therapy for primary high-grade gliomas guided by biological rhythms. Transl Oncol 2024; 45:101973. [PMID: 38705052 PMCID: PMC11089398 DOI: 10.1016/j.tranon.2024.101973] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2023] [Revised: 04/05/2024] [Accepted: 04/20/2024] [Indexed: 05/07/2024] Open
Abstract
OBJECTIVE High-grade glioma (HGG) patients frequently encounter treatment resistance and relapse, despite numerous interventions seeking enhanced survival outcomes yielding limited success. Consequently, this study, rooted in our prior research, aimed to ascertain whether leveraging circadian rhythm phase attributes could optimize radiotherapy results. METHODS In this retrospective analysis, we meticulously selected 121 HGG cases with synchronized rhythms through Cosinor analysis. Post-surgery, all subjects underwent standard radiotherapy alongside Temozolomide chemotherapy. Random allocation ensued, dividing patients into morning (N = 69) and afternoon (N = 52) radiotherapy cohorts, enabling a comparison of survival and toxicity disparities. RESULTS The afternoon radiotherapy group exhibited improved overall survival (OS) and progression-free survival (PFS) relative to the morning cohort. Notably, median OS extended to 25.6 months versus 18.5 months, with P = 0.014, with median PFS at 20.6 months versus 13.3 months, with P = 0.022, post-standardized radiotherapy. Additionally, lymphocyte expression levels in the afternoon radiation group 32.90(26.10, 39.10) significantly exceeded those in the morning group 31.30(26.50, 39.20), with P = 0.032. CONCLUSIONS This study underscores the markedly prolonged average survival within the afternoon radiotherapy group. Moreover, lymphocyte proportion demonstrated a notable elevation in the afternoon group. Timely and strategic adjustments of therapeutic interventions show the potential to improve therapeutic efficacy, while maintaining vigilant systemic immune surveillance. A comprehensive grasp of physiological rhythms governing both the human body and tumor microenvironment can refine treatment efficacy, concurrently curtailing immune-related damage-a crucial facet of precision medicine.
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Affiliation(s)
- Zhanfeng Niu
- Department of Neurosurgery, General Hospital of Ningxia Medical University, Yinchuan, Ningxia Hui Autonomous Region 750004, PR China
| | - Zhihua Yang
- Department of Radiation Oncology, General Hospital of Ningxia Medical University, Yinchuan, Ningxia Hui Autonomous Region 750004, PR China
| | - Shengyu Sun
- Department of Neurosurgery, General Hospital of Ningxia Medical University, Yinchuan, Ningxia Hui Autonomous Region 750004, PR China
| | - Zhong Zeng
- Department of Neurosurgery, General Hospital of Ningxia Medical University, Yinchuan, Ningxia Hui Autonomous Region 750004, PR China; Key Laboratory of Stem Cell and Regenerative Medicine, Institute of Medical Sciences, General Hospital of Ningxia Medical University, Yinchuan, Ningxia 750004, PR China
| | - Qian Han
- Department of Neurosurgery, General Hospital of Ningxia Medical University, Yinchuan, Ningxia Hui Autonomous Region 750004, PR China; Key Laboratory of Stem Cell and Regenerative Medicine, Institute of Medical Sciences, General Hospital of Ningxia Medical University, Yinchuan, Ningxia 750004, PR China
| | - Liang Wu
- Department of Neurosurgery, General Hospital of Ningxia Medical University, Yinchuan, Ningxia Hui Autonomous Region 750004, PR China
| | - Jinbo Bai
- Department of Neurosurgery, General Hospital of Ningxia Medical University, Yinchuan, Ningxia Hui Autonomous Region 750004, PR China
| | - Hailiang Li
- Department of Radiation Oncology, General Hospital of Ningxia Medical University, Yinchuan, Ningxia Hui Autonomous Region 750004, PR China
| | - Hechun Xia
- Department of Neurosurgery, General Hospital of Ningxia Medical University, Yinchuan, Ningxia Hui Autonomous Region 750004, PR China; Key Laboratory of Stem Cell and Regenerative Medicine, Institute of Medical Sciences, General Hospital of Ningxia Medical University, Yinchuan, Ningxia 750004, PR China.
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Falahatpour Z, Geramifar P, Mahdavi SR, Abdollahi H, Salimi Y, Nikoofar A, Ay MR. Potential advantages of FDG-PET radiomic feature map for target volume delineation in lung cancer radiotherapy. J Appl Clin Med Phys 2022; 23:e13696. [PMID: 35699200 PMCID: PMC9512354 DOI: 10.1002/acm2.13696] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2021] [Revised: 04/20/2022] [Accepted: 05/27/2022] [Indexed: 11/09/2022] Open
Abstract
PURPOSE To investigate the potential benefits of FDG PET radiomic feature maps (RFMs) for target delineation in non-small cell lung cancer (NSCLC) radiotherapy. METHODS Thirty-two NSCLC patients undergoing FDG PET/CT imaging were included. For each patient, nine grey-level co-occurrence matrix (GLCM) RFMs were generated. gross target volume (GTV) and clinical target volume (CTV) were contoured on CT (GTVCT , CTVCT ), PET (GTVPET40 , CTVPET40 ), and RFMs (GTVRFM , CTVRFM ,). Intratumoral heterogeneity areas were segmented as GTVPET50-Boost and radiomic boost target volume (RTVBoost ) on PET and RFMs, respectively. GTVCT in homogenous tumors and GTVPET40 in heterogeneous tumors were considered as GTVgold standard (GTVGS ). One-way analysis of variance was conducted to determine the threshold that finds the best conformity for GTVRFM with GTVGS . Dice similarity coefficient (DSC) and mean absolute percent error (MAPE) were calculated. Linear regression analysis was employed to report the correlations between the gold standard and RFM-derived target volumes. RESULTS Entropy, contrast, and Haralick correlation (H-correlation) were selected for tumor segmentation. The threshold values of 80%, 50%, and 10% have the best conformity of GTVRFM-entropy , GTVRFM-contrast , and GTVRFM-H-correlation with GTVGS , respectively. The linear regression results showed a positive correlation between GTVGS and GTVRFM-entropy (r = 0.98, p < 0.001), between GTVGS and GTVRFM-contrast (r = 0.93, p < 0.001), and between GTVGS and GTVRFM-H-correlation (r = 0.91, p < 0.001). The average threshold values of 45% and 15% were resulted in the best segmentation matching between CTVRFM-entropy and CTVRFM-contrast with CTVGS , respectively. Moreover, we used RFM to determine RTVBoost in the heterogeneous tumors. Comparison of RTVBoost with GTVPET50-Boost MAPE showed the volume error differences of 31.7%, 36%, and 34.7% in RTVBoost-entropy , RTVBoost-contrast , and RTVBoost-H-correlation , respectively. CONCLUSIONS FDG PET-based radiomics features in NSCLC demonstrated a promising potential for decision support in radiotherapy, helping radiation oncologists delineate tumors and generate accurate segmentation for heterogeneous region of tumors.
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Affiliation(s)
- Zahra Falahatpour
- Department of Medical Physics, Tehran University of Medical Sciences, Tehran, Iran
| | - Parham Geramifar
- Research Center for Nuclear Medicine, Shariati Hospital, Tehran University of Medical Sciences, Tehran, Iran
| | - Seyed Rabie Mahdavi
- Department of Medical Physics, Faculty of Medical Sciences, Iran University of Medical Sciences, Tehran, Iran
| | - Hamid Abdollahi
- Department of Radiology Technology, Faculty of Allied Medicine, Kerman University of Medical Sciences, Kerman, Iran
| | - Yazdan Salimi
- Department of Biomedical Engineering and Medical Physics, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Alireza Nikoofar
- Department of Radiation Oncology, Faculty of Medical Sciences, Iran University of Medical Sciences, Tehran, Iran
| | - Mohammad Reza Ay
- Department of Medical Physics, Tehran University of Medical Sciences, Tehran, Iran
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Chronoradiobiology of Breast Cancer: The Time Is Now to Link Circadian Rhythm and Radiation Biology. Int J Mol Sci 2022; 23:ijms23031331. [PMID: 35163264 PMCID: PMC8836288 DOI: 10.3390/ijms23031331] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2021] [Revised: 01/20/2022] [Accepted: 01/23/2022] [Indexed: 12/13/2022] Open
Abstract
Circadian disruption has been linked to cancer development, progression, and radiation response. Clinical evidence to date shows that circadian genetic variation and time of treatment affect radiation response and toxicity for women with breast cancer. At the molecular level, there is interplay between circadian clock regulators such as PER1, which mediates ATM and p53-mediated cell cycle gating and apoptosis. These molecular alterations may govern aggressive cancer phenotypes, outcomes, and radiation response. Exploiting the various circadian clock mechanisms may enhance the therapeutic index of radiation by decreasing toxicity, increasing disease control, and improving outcomes. We will review the body’s natural circadian rhythms and clock gene-regulation while exploring preclinical and clinical evidence that implicates chronobiological disruptions in the etiology of breast cancer. We will discuss radiobiological principles and the circadian regulation of DNA damage responses. Lastly, we will present potential rational therapeutic approaches that target circadian pathways to improve outcomes in breast cancer. Understanding the implications of optimal timing in cancer treatment and exploring ways to entrain circadian biology with light, diet, and chronobiological agents like melatonin may provide an avenue for enhancing the therapeutic index of radiotherapy.
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Qasempour Y, Mohammadi A, Rezaei M, Pouryazadanpanah P, Ziaddini F, Borbori A, Shiri I, Hajianfar G, Janati A, Ghasemirad S, Abdollahi H. Radiographic Texture Reproducibility: The Impact of Different Materials, their Arrangement, and Focal Spot Size. JOURNAL OF MEDICAL SIGNALS & SENSORS 2020; 10:275-285. [PMID: 33575200 PMCID: PMC7866945 DOI: 10.4103/jmss.jmss_64_19] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2019] [Revised: 05/27/2020] [Accepted: 08/01/2020] [Indexed: 12/24/2022]
Abstract
Background: Feature reproducibility is a critical issue in quantitative radiomic studies. The aim of this study is to assess how radiographic radiomic textures behave against changes in phantom materials, their arrangements, and focal spot size. Method: A phantom with detachable parts was made using wood, sponge, Plexiglas, and rubber. Each material had 1 cm thickness and was imaged for consecutive time. The phantom also was imaged by change in the arrangement of its materials. Imaging was done with two focal spot sizes including 0.6 and 1.2 mm. All images were acquired with a digital radiography machine. Several texture features were extracted from the same size region of interest in all images. To assess reproducibility, coefficient of variation (COV), intraclass correlation coefficient (ICC), and Bland–Altman tests were used. Results: Results show that 59%, 50%, and 4.5% of all features are most reproducible (COV ≤5%) against change in focal spot size, material arrangements, and phantom's materials, respectively. Results on Bland–Altman analysis showed that there is just a nonreproducible feature against change in the focal spot size. On the ICC results, we observed that the ICCs for more features are >0.90 and there were few features with ICC lower than 0.90. Conclusion: We showed that radiomic textures are vulnerable against changes in materials, arrangement, and different focal spot sizes. These results suggest that a careful analysis of the effects of these parameters is essential before any radiomic clinical application.
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Affiliation(s)
- Younes Qasempour
- Student Research Committee, School of Allied Medicine, Kerman University of Medical Sciences, Kerman, Iran
| | - Amirsalar Mohammadi
- Student Research Committee, School of Allied Medicine, Kerman University of Medical Sciences, Kerman, Iran
| | - Mostafa Rezaei
- Student Research Committee, School of Allied Medicine, Kerman University of Medical Sciences, Kerman, Iran
| | - Parisa Pouryazadanpanah
- Student Research Committee, School of Allied Medicine, Kerman University of Medical Sciences, Kerman, Iran
| | - Fatemeh Ziaddini
- Student Research Committee, School of Allied Medicine, Kerman University of Medical Sciences, Kerman, Iran
| | - Alma Borbori
- Student Research Committee, School of Allied Medicine, Kerman University of Medical Sciences, Kerman, Iran
| | - Isaac Shiri
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, Geneva, Switzerland
| | - Ghasem Hajianfar
- Department of Biomedical and Health Informatics, Rajaiee Cardiovascular Medical and Research Center, Iran University of Medical Science, Tehran, Iran
| | - Azam Janati
- Department of Medical Biotechnology, School of Paramedical Sciences, Qazvin University of Medical Sciences, Qazvin, Iran
| | - Sareh Ghasemirad
- Department of Emergency Medicine, School of Medicine, Kerman University of Medical Sciences, Kerman, Iran
| | - Hamid Abdollahi
- Student Research Committee, School of Allied Medicine, Kerman University of Medical Sciences, Kerman, Iran.,Department of Radiologic Sciences and Medical Physics, Faculty of Allied Medicine, Kerman University of Medical Sciences, Kerman, Iran
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Rastegar S, Beigi J, Saeedi E, Shiri I, Qasempour Y, Rezaei M, Abdollahi H. Radiographic Image Radiomics Feature Reproducibility: A Preliminary Study on the Impact of Field Size. J Med Imaging Radiat Sci 2020; 51:128-136. [PMID: 32089514 DOI: 10.1016/j.jmir.2019.11.006] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2019] [Revised: 10/26/2019] [Accepted: 11/12/2019] [Indexed: 01/20/2023]
Abstract
RATIONALE AND OBJECTIVES Radiomics is an approach to quantifying diseases. Recently, several studies have indicated that radiomics features are vulnerable against imaging parameters. The aim of this study is to assess how radiomics features change with radiographic field sizes, positions in the field size, and mAs. MATERIALS AND METHODS A large and small wood phantom and a cotton phantom were prepared and imaged in different field sizes, mAs, and placement in the radiographic field size. A region of interest was drawn on the image features, and twenty two features were extracted. Radiomics feature reproducibility was obtained based on coefficient of variation, Bland-Altman analysis, and intraclass correlation coefficient. Features with coefficient of variation ≤ 5%, intraclass correlation coefficient ≤ 90%, and 1% ≤ U/LRL ≤30% were introduced as robust features. U/LRL is upper/lower reproducibility limits in Bland-Altman. RESULTS For all field sizes and all phantoms, features including Difference Variance, Inverse Different Moment, Fraction, Long Run Emphasis, Run Length Non Uniformity, and Short Run Emphasis were found as highly reproducible features. For change in the position of field size, Fraction was the most reproducible in all field sizes and all phantoms. On the mAs change, we found that feature, Short Run Emphasis field 15 × 15 for small wood phantom, and Correlation in all field sizes for Cotton are the most reproducible features. CONCLUSION We demonstrated that radiomics features are strongly vulnerable against radiographic field size, positions in the radiation field, mAs, and phantom materials, and reproducibility analyses should be performed before each radiomics study. Moreover, these changing parameters should be considered, and their effects should be minimized in future radiomics studies.
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Affiliation(s)
- Sajjad Rastegar
- Student Research Committee, Paramedical Faculty, Rafsanjan University of Medical Sciences, Rafsanjan, Iran; Department of Radiology Technology, Paramedical Faculty, Rafsanjan University of Medical Sciences, Rafsanjan, Iran
| | - Jalal Beigi
- Student Research Committee, Paramedical Faculty, Rafsanjan University of Medical Sciences, Rafsanjan, Iran; Department of Radiology Technology, Paramedical Faculty, Rafsanjan University of Medical Sciences, Rafsanjan, Iran
| | - Ehsan Saeedi
- Student Research Committee, Paramedical Faculty, Rafsanjan University of Medical Sciences, Rafsanjan, Iran; Department of Radiology Technology, Paramedical Faculty, Rafsanjan University of Medical Sciences, Rafsanjan, Iran
| | - Isaac Shiri
- Division of Nuclear Medicine and Molecular Imaging, Department of Medical Imaging, Geneva University Hospital, Geneva 4, Switzerland
| | - Younes Qasempour
- Student Research Committee, Faculty of Allied Medicine, Kerman University of Medical Sciences, Kerman, Iran
| | - Mostafa Rezaei
- Student Research Committee, Faculty of Allied Medicine, Kerman University of Medical Sciences, Kerman, Iran
| | - Hamid Abdollahi
- Student Research Committee, Faculty of Allied Medicine, Kerman University of Medical Sciences, Kerman, Iran; Department of Radiologic Sciences and Medical Physics, Faculty of Allied Medicine, Kerman University of Medical Sciences, Kerman, Iran.
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Rastegar S, Vaziri M, Qasempour Y, Akhash MR, Abdalvand N, Shiri I, Abdollahi H, Zaidi H. Radiomics for classification of bone mineral loss: A machine learning study. Diagn Interv Imaging 2020; 101:599-610. [PMID: 32033913 DOI: 10.1016/j.diii.2020.01.008] [Citation(s) in RCA: 54] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2019] [Revised: 01/11/2020] [Accepted: 01/13/2020] [Indexed: 12/31/2022]
Abstract
PURPOSE The purpose of this study was to develop predictive models to classify osteoporosis, osteopenia and normal patients using radiomics and machine learning approaches. MATERIALS AND METHODS A total of 147 patients were included in this retrospective single-center study. There were 12 men and 135 women with a mean age of 56.88±10.6 (SD) years (range: 28-87 years). For each patient, seven regions including four lumbar and three femoral including trochanteric, intertrochanteric and neck were segmented on bone mineral densitometry images and 54 texture features were extracted from the regions. The performance of four feature selection methods, including classifier attribute evaluation (CLAE), one rule attribute evaluation (ORAE), gain ratio attribute evaluation (GRAE) and principal components analysis (PRCA) along with four classification methods, including random forest (RF), random committee (RC), K-nearest neighbor (KN) and logit-boost (LB) were evaluated. Four classification categories, including osteopenia vs. normal, osteoporosis vs. normal, osteopenia vs. osteoporosis and osteoporosis+osteopenia vs. osteoporosis were examined for the defined seven regions. The classification model performances were evaluated using the area under the receiver operator characteristic curve (AUC). RESULTS The AUC values ranged from 0.50 to 0.78. The combination of methods RF+CLAE, RF+ORAE and RC+ORAE yielded highest performance (AUC=0.78) in discriminating between osteoporosis and normal state in the trochanteric region. The combinations of RF+PRCA and LB+PRCA had the highest performance (AUC=0.76) in discriminating between osteoporosis and normal state in the neck region. CONCLUSION The machine learning radiomic approach can be considered as a new method for bone mineral deficiency disease classification using bone mineral densitometry image features.
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Affiliation(s)
- S Rastegar
- Student Research Committee, School of Paramedical Sciences, Rafsanjan University of Medical Sciences, Rafsanjan, Iran; Department of Radiology Technology, School of Paramedical Sciences, Rafsanjan University of Medical Sciences, Rafsanjan, Iran
| | - M Vaziri
- Student Research Committee, Faculty of Allied Medicine, Kerman University of Medical Sciences, Kerman, Iran; Department of Radiologic Sciences, Medical Physics, Faculty of Allied Medicine, Kerman University of Medical Sciences, Kerman, Iran
| | - Y Qasempour
- Student Research Committee, Faculty of Allied Medicine, Kerman University of Medical Sciences, Kerman, Iran; Department of Radiologic Sciences, Medical Physics, Faculty of Allied Medicine, Kerman University of Medical Sciences, Kerman, Iran
| | - M R Akhash
- Student Research Committee, Faculty of Allied Medicine, Kerman University of Medical Sciences, Kerman, Iran; Department of Radiologic Sciences, Medical Physics, Faculty of Allied Medicine, Kerman University of Medical Sciences, Kerman, Iran
| | - N Abdalvand
- Department of Medical Physics, School of Medicine, Iran University of Medical Sciences, Tehran, Iran
| | - I Shiri
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, CH-1211 Geneva 4, Switzerland
| | - H Abdollahi
- Student Research Committee, Faculty of Allied Medicine, Kerman University of Medical Sciences, Kerman, Iran; Department of Radiologic Sciences, Medical Physics, Faculty of Allied Medicine, Kerman University of Medical Sciences, Kerman, Iran.
| | - H Zaidi
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, CH-1211 Geneva 4, Switzerland; Geneva University Neurocenter, Geneva University, CH-1205 Geneva, Switzerland; Department of Nuclear Medicine and Molecular Imaging, University of Groningen, University Medical Center Groningen, 9713 GZ Groningen, The Netherlands; Department of Nuclear Medicine, University of Southern Denmark, 5230 Odense, Denmark
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