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Scalvini B, Heling LWHJ, Sheikhhassani V, Sunderlikova V, Tans SJ, Mashaghi A. Cytosolic Interactome Protects Against Protein Unfolding in a Single Molecule Experiment. Adv Biol (Weinh) 2023; 7:e2300105. [PMID: 37409427 DOI: 10.1002/adbi.202300105] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2023] [Revised: 06/13/2023] [Indexed: 07/07/2023]
Abstract
Single molecule techniques are particularly well suited for investigating the processes of protein folding and chaperone assistance. However, current assays provide only a limited perspective on the various ways in which the cellular environment can influence the folding pathway of a protein. In this study, a single molecule mechanical interrogation assay is developed and used to monitor protein unfolding and refolding within a cytosolic solution. This allows to test the cumulative topological effect of the cytoplasmic interactome on the folding process. The results reveal a stabilization against forced unfolding for partial folds, which are attributed to the protective effect of the cytoplasmic environment against unfolding and aggregation. This research opens the possibility of conducting single molecule molecular folding experiments in quasi-biological environments.
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Affiliation(s)
- Barbara Scalvini
- Medical Systems Biophysics and Bioengineering, Leiden Academic Centre for Drug Research, Faculty of Science, Leiden University, Einsteinweg 55, Leiden, 2333CC, The Netherlands
- Centre for Interdisciplinary Genome Research, Faculty of Science, Leiden University, Einsteinweg 55, Leiden, 2333CC, The Netherlands
| | - Laurens W H J Heling
- Medical Systems Biophysics and Bioengineering, Leiden Academic Centre for Drug Research, Faculty of Science, Leiden University, Einsteinweg 55, Leiden, 2333CC, The Netherlands
- Centre for Interdisciplinary Genome Research, Faculty of Science, Leiden University, Einsteinweg 55, Leiden, 2333CC, The Netherlands
| | - Vahid Sheikhhassani
- Medical Systems Biophysics and Bioengineering, Leiden Academic Centre for Drug Research, Faculty of Science, Leiden University, Einsteinweg 55, Leiden, 2333CC, The Netherlands
- Centre for Interdisciplinary Genome Research, Faculty of Science, Leiden University, Einsteinweg 55, Leiden, 2333CC, The Netherlands
| | | | - Sander J Tans
- AMOLF, Science Park 104, Amsterdam, 1098 XG, The Netherlands
- Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Van der Maasweg 9, Delft, 2629HZ, The Netherlands
| | - Alireza Mashaghi
- Medical Systems Biophysics and Bioengineering, Leiden Academic Centre for Drug Research, Faculty of Science, Leiden University, Einsteinweg 55, Leiden, 2333CC, The Netherlands
- Centre for Interdisciplinary Genome Research, Faculty of Science, Leiden University, Einsteinweg 55, Leiden, 2333CC, The Netherlands
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