The use of fluorescein for labeling genomic probes in the checkerboard DNA–DNA hybridization method

Fluorescein-Metal Hybrid Surfactant Conjugates as a Smart Material for Antimicrobial Photodynamic Therapy against Staphylococcus aureus

Photodynamic therapy (PDT) has been extensively used as an effective alternative for the treatment of bacterial infection using photosensitizers (PSs) in the presence of appropriate light. However, the limitation in the effectiveness of PDT is because of the low yield of singlet oxygen from existing PSs because of their low solubility. Thus, we have developed a platform to enhance the solubility and the photodynamic activity of PSs against bacterial cells using metallosurfactants. Herein, we have used manganese metal-containing single- (MnC I) and double-chain metallosurfactants (MnC II) which show an interplay of electrostatic/hydrophobic interactions with fluorescein (FL) dye (as a PS) and when used in the presence of light enhances the PDT. These interactions play a significant role in enhancing the singlet oxygen generation efficiency of FL. MnC I and MnC II have shown good antimicrobial activity against Gram-positive Staphylococcus aureus (S. aureus) bacteria. More interestingly, these metallosurfactants when combined with FL significantly enhanced the affectivity against S. aureus, wherein 100% killing was achieved. As compared to experiments performed in the dark, the metallosurfactant, by enhancing the solubility of FL, increases the formation of singlet oxygen upon light irradiation and thus increases cell death. Therefore, the synergistic effect of FL (light toxicity) and metallosurfactants (dark toxicity) defined excellent reduction in the colony formation of bacteria. These results were corroborated through field-emission scanning electron microscopy and optical microscopy, where the rupturing of the cell wall of bacterial cells was observed during this therapy. Moreover, the binding of metallosurfactants to the genomic DNA of S. aureus was also evaluated by gel retardation analysis and UV-visible spectroscopy. The outcomes from this study will deliver formulations for PDT which can be used in clinical medical applications and cancer therapy in the future.

Chromium-based metallosurfactants: synthesis, physicochemical characterization and probing of their interactions with xanthene dyes

The solubilization of xanthene dyes of variable solubility has been estimated in chromium based metallosurfactants.

Use of the checkerboard DNA-DNA hybridization technique for bacteria detection in Aedes aegypti (Diptera:Culicidae) (L.)

Background

Bacteria associated with insects can have a substantial impact on the biology and life cycle of their host. The checkerboard DNA-DNA hybridization technique is a semi-quantitative technique that has been previously employed in odontology to detect and quantify a variety of bacterial species in dental samples. Here we tested the applicability of the checkerboard DNA-DNA hybridization technique to detect the presence of Aedes aegypti-associated bacterial species in larvae, pupae and adults of A. aegypti.

Findings

Using the checkerboard DNA-DNA hybridization technique we could detect and estimate the number of four bacterial species in total DNA samples extracted from A. aegypti single whole individuals and midguts. A. aegypti associated bacterial species were also detected in the midgut of four other insect species, Lutzomyia longipalpis, Drosophila melanogaster, Bradysia hygida and Apis mellifera.

Conclusions

Our results demonstrate that the checkerboard DNA-DNA hybridization technique can be employed to study the microbiota composition of mosquitoes. The method has the sensitivity to detect bacteria in single individuals, as well as in a single organ, and therefore can be employed to evaluate the differences in bacterial counts amongst individuals in a given mosquito population. We suggest that the checkerboard DNA-DNA hybridization technique is a straightforward technique that can be widely used for the characterization of the microbiota in mosquito populations.

Use of the DNA Checkerboard hybridization method for detection and quantitation of Candida species in oral microbiota

The DNA Checkerboard method enables the simultaneous identification of distinct microorganisms in a large number of samples and employs up to 45 whole genomic DNA probes to gram-negative and gram-positive bacterial species present in subgingival biofilms. Collectively, they account for 55%-60% of the bacteria in subgingival biofilms. In this study, we present the DNA Checkerboard hybridization as an alternative method for the detection and quantitation of Candida species in oral cavities. Our results reveal that DNA Checkerboard is sensitive enough and constitutes a powerful and appropriate method for detecting and quantifying Candida species found in the oral cavity.

Use of checkerboard DNA-DNA hybridization to evaluate the internal contamination of dental implants and comparison of bacterial leakage with cast or pre-machined abutments

AIMS

To evaluate the checkerboard DNA-DNA hybridization method for detection and quantitation of bacteria from the internal parts of dental implants and to compare bacterial leakage from implants connected either to cast or to pre-machined abutments.

MATERIALS AND METHODS

Nine plastic abutments cast in a Ni-Cr alloy and nine pre-machined Co-Cr alloy abutments with plastic sleeves cast in Ni-Cr were connected to Branemark-compatible implants. A group of nine implants was used as control. The implants were inoculated with 3 microl of a solution containing 10(8) cells/ml of Streptococcus sobrinus. Bacterial samples were immediately collected from the control implants while assemblies were completely immersed in 5 ml of sterile Tripty Soy Broth (TSB) medium. After 14 days of anaerobic incubation, occurrence of leakage at the implant-abutment interface was evaluated by assessing contamination of the TSB medium. Internal contamination of the implants was evaluated with the checkerboard DNA-DNA hybridization method.

RESULTS

DNA-DNA hybridization was sensitive enough to detect and quantify the microorganism from the internal parts of the implants. No differences in leakage and in internal contamination were found between cast and pre-machined abutments. Bacterial scores in the control group were significantly higher than in the other groups (P<0.05).

CONCLUSION

Bacterial leakage through the implant-abutment interface does not significantly differ when cast or pre-machined abutments are used. The checkerboard DNA-DNA hybridization technique is suitable for the evaluation of the internal contamination of dental implants although further studies are necessary to validate the use of computational methods for the improvement of the test accuracy.