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Farhat A, Elleuch J, Ben Amor F, Barkallah M, Smith KF, Ben Neila I, Abdelkafi S, Fendri I. A fast and accurate method for specific detection and quantification of the bloom-forming microalgae Karlodinium veneficum in the marine environment. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:88699-88709. [PMID: 35836051 DOI: 10.1007/s11356-022-21667-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2022] [Accepted: 06/21/2022] [Indexed: 06/15/2023]
Abstract
Karlodinium veneficum is a toxic benthic globally distributed dinoflagellate which has direct impacts on human health and the environment. Early and accurate detection of this harmful algal bloom-forming species could be useful for potential risks monitoring and management. In the present work, a real-time PCR targeting the internal transcribed spacer ribosomal DNA region for the specific detection and absolute quantification of K. veneficum was designed. Then, the assay conditions were adjusted and validated. The developed qPCR was highly specific for the target species and displayed no cross-reactivity with closely related dinoflagellates and/or other microalgal species commonly distributed along the Tunisian coast. Its lowest detection limit was 5 rDNA copies per reaction, which is often considered satisfying. qPCR assay enumeration accuracy was evaluated using artificially inoculated environmental samples. The comparison of the cell abundance estimates obtained by qPCR assay with the theoretical estimates showed no statistically significant difference across a range of concentrations. We suggest that the qPCR approach developed in the present study may be a valuable tool to investigate the distribution and seasonal dynamics of K. veneficum in marine environments.
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Affiliation(s)
- Ameny Farhat
- Laboratory of Plant Biotechnology Applied to the Improvement of Cultures, Faculty of Sciences of Sfax, University of Sfax, B.P. 1171, 3000, 3029, Sfax, Tunisia
| | - Jihen Elleuch
- Laboratoire de Génie Enzymatique et Microbiologie, Equipe de Biotechnologie des Algues, Ecole Nationale d'Ingénieurs de Sfax, Université de Sfax, Sfax, Tunisia
| | - Faten Ben Amor
- Laboratoire de Génie Enzymatique et Microbiologie, Equipe de Biotechnologie des Algues, Ecole Nationale d'Ingénieurs de Sfax, Université de Sfax, Sfax, Tunisia
| | - Mohamed Barkallah
- Laboratoire de Génie Enzymatique et Microbiologie, Equipe de Biotechnologie des Algues, Ecole Nationale d'Ingénieurs de Sfax, Université de Sfax, Sfax, Tunisia
| | - Kirsty F Smith
- Cawthron Institute, 98 Halifax Street East, Private Bag 2, Nelson, 7042, New Zealand
| | | | - Slim Abdelkafi
- Laboratoire de Génie Enzymatique et Microbiologie, Equipe de Biotechnologie des Algues, Ecole Nationale d'Ingénieurs de Sfax, Université de Sfax, Sfax, Tunisia
| | - Imen Fendri
- Laboratory of Plant Biotechnology Applied to the Improvement of Cultures, Faculty of Sciences of Sfax, University of Sfax, B.P. 1171, 3000, 3029, Sfax, Tunisia.
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M N, G S S, J S, K H, C S, P M, R N, C P S, N C, Ram B, C A, B S. Whole genome analysis and functional characterization of a novel Bacillus thuringiensis (Bt 62) isolate against sugarcane white grub Holotrichia serrata (F). Genomics 2021; 114:185-195. [PMID: 34933070 DOI: 10.1016/j.ygeno.2021.12.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2020] [Revised: 01/18/2021] [Accepted: 12/15/2021] [Indexed: 11/19/2022]
Abstract
In this study, we report the whole genome assembly of Bt 62, a novel isolate harbouring cry8 holotype gene identified by us earlier. Sequencing was carried out using a combination of Illumina NextSeq 500 and Oxford Nanopore sequencing Technologies (ONT). The final assembled genome was 6.13 Mb comprising a circular chromosome and four plasmids. The bioassay studies against Holotrichia serrata (F.) (Coleoptera: Scarabaeidae), a polyphagous pest infesting sugarcane and other crops, indicated significant toxicity to first instar grubs over untreated larvae achieving a highest mean mortality of 91.11% for various doses tested. In vitro proteolytic assay and histopathological studies of the midgut of infected white grubs revealed proteolytic processing of the protoxin and extensive degeneration of larval midgut epithelial cells. The results demonstrate that this novel isolate could be used as a biopesticide or its crystal toxin genes could be expressed in sugarcane and other crops for resistance against H. serrata.
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Affiliation(s)
- Naveenarani M
- ICAR- Sugarcane Breeding Institute, Coimbatore, Tamil Nadu 641007, India
| | - Suresha G S
- ICAR- Sugarcane Breeding Institute, Coimbatore, Tamil Nadu 641007, India
| | - Srikanth J
- ICAR- Sugarcane Breeding Institute, Coimbatore, Tamil Nadu 641007, India
| | - Hari K
- ICAR- Sugarcane Breeding Institute, Coimbatore, Tamil Nadu 641007, India
| | - Sankaranarayanan C
- ICAR- Sugarcane Breeding Institute, Coimbatore, Tamil Nadu 641007, India
| | - Mahesh P
- ICAR- Sugarcane Breeding Institute, Coimbatore, Tamil Nadu 641007, India
| | - Nirmala R
- ICAR- Sugarcane Breeding Institute, Coimbatore, Tamil Nadu 641007, India
| | - Swathik C P
- ICAR- Sugarcane Breeding Institute, Coimbatore, Tamil Nadu 641007, India
| | - Crickmore N
- School of Life Sciences, University of Sussex, Falmer, Brighton BN1 9QG, UK
| | - Bakshi Ram
- ICAR- Sugarcane Breeding Institute, Coimbatore, Tamil Nadu 641007, India
| | - Appunu C
- ICAR- Sugarcane Breeding Institute, Coimbatore, Tamil Nadu 641007, India
| | - Singaravelu B
- ICAR- Sugarcane Breeding Institute, Coimbatore, Tamil Nadu 641007, India.
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Falqueto SA, Pitaluga BF, de Sousa JR, Targanski SK, Campos MG, de Oliveira Mendes TA, da Silva GF, Silva DHS, Soares MA. Bacillus spp. metabolites are effective in eradicating Aedes aegypti (Diptera: Culicidae) larvae with low toxicity to non-target species. J Invertebr Pathol 2020; 179:107525. [PMID: 33383067 DOI: 10.1016/j.jip.2020.107525] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2020] [Revised: 12/14/2020] [Accepted: 12/23/2020] [Indexed: 11/18/2022]
Abstract
The growing spread of dengue, chikungunya and Zika viruses demand the development of new and environmentally safe control methods for their vector, the mosquito Aedes aegypti. This study aims to find novel larvicidal agents from mutualistic (endophytic and rhizospheric) or edaphic bacteria that have no action against non-target organisms. Eleven out of the 254 bacterial strains tested were able to kill Ae. aegypti larvae. Larvicidal activity did not depend on presence of cells, since culture supernatants or crude lipopeptide extracts (CLEs) killed the larvae. Bacillus safensis BacI67 and Bacillus paranthracis C21 supernatants were the best performing supernatants, displaying the lowest lethal concentrations (LC50 = 31.11 µL/mL and 45.84 µL/mL, respectively). Bacillus velezensis B64a and Bacillus velezensis B15 produced the best performing CLEs (LC50 = 0.11 mg/mL and 0.12 mg/mL, respectively). Mass spectrometry analysis of CLEs detected a mixture of surfactins, iturins, and fengycins. The samples tested were weakly- or non-toxic to mammalian cells (RAW 264.7 macrophages and VERO cells) and non-target organisms (Caenorhabditis elegans, Galleria mellonella, Scenedesmus obliquus, and Tetrahymena pyriformis) - especially B. velezensis B15 CLE. The biosynthetic gene clusters related to secondary metabolism identified by whole genome sequencing of the four best performing bacteria strains revealed clusters for bacteriocin, beta-lactone, lanthipeptide, non-ribosomal peptide synthetases, polyketide synthases (PKS), siderophores, T3PKS, type 1 PKS-like, terpenes, thiopeptides, and trans-AT-PKS. Purification of lipopeptides may clarify the mechanisms by which these extracts kill Ae. aegypti larvae.
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Affiliation(s)
- Silvia Altoé Falqueto
- Departamento de Botânica e Ecologia, Universidade Federal de Mato Grosso, Av. Fernando Corrêa da Costa 2367, 78060-900 Cuiabá, Brazil
| | - Bruno Faria Pitaluga
- Departamento de Botânica e Ecologia, Universidade Federal de Mato Grosso, Av. Fernando Corrêa da Costa 2367, 78060-900 Cuiabá, Brazil
| | - Janaína Rosa de Sousa
- Departamento de Botânica e Ecologia, Universidade Federal de Mato Grosso, Av. Fernando Corrêa da Costa 2367, 78060-900 Cuiabá, Brazil
| | - Sabrina Ketrin Targanski
- Departamento de Botânica e Ecologia, Universidade Federal de Mato Grosso, Av. Fernando Corrêa da Costa 2367, 78060-900 Cuiabá, Brazil
| | - Mateus Gandra Campos
- Departamento de Bioquímica e Biologia Molecular, Universidade Federal de Viçosa, Viçosa, Brazil
| | | | | | - Dulce Helena Siqueira Silva
- Centro de Inovação em Biodiversidade e Fármacos, Instituto de Química, Universidade Estadual Paulista Júlio de Mesquita Filho, Araraquara, Brazil
| | - Marcos Antônio Soares
- Departamento de Botânica e Ecologia, Universidade Federal de Mato Grosso, Av. Fernando Corrêa da Costa 2367, 78060-900 Cuiabá, Brazil.
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Zribi Zghal R, Frikha F, Elleuch J, Darriet F, Chandre F, Jaoua S, Tounsi S. The combinatory effect of Cyt1Aa flexibility and specificity against dipteran larvae improves the toxicity of Bacillus thuringensis kurstaki toxins. Int J Biol Macromol 2019; 123:42-49. [PMID: 30391590 DOI: 10.1016/j.ijbiomac.2018.10.226] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2018] [Revised: 10/31/2018] [Accepted: 10/31/2018] [Indexed: 11/15/2022]
Abstract
Cyt1A98 is a novel cytolytic protein, from BUPM98 Bacillus thuringiensis strain, characterized by its synergistic activity with B. thuringiensis kurstaki toxins against lepidopteran larvae. In this study, we evidenced that Cyt1A98 improves the toxicity of B. thuringiensis kurstaki toxins against Aedes aegypti larvae. In fact, the strain BNS3pHTcyt1A98 exhibited a larvicidal activity of about 849-fold of that of BNS3pHTBlue against A. aegypti. The molecular and biochemical characterizations, of cyt1A98 gene and its product, were achieved. Cyt1A98 had an LC50 value of about 126.56 mg l-1 against A. aegypti larvae. Compared to Cyt1Aa of B. thuringiensis israelensis, Cyt1A98 amino acid sequence harbours three substitutions of three conserved amino acids among Cyt1Aa family members (Ser42Pro, Pro82Ala, Met188Thr). The Cyt1A98 protein structural analysis evidenced more flexibility than Cyt1Aa. According to the high fluctuation observed for the residue Pro42, the amino acid at position 42 is implicated in the flexibility property of Cyt1Aa especially for the αC and αD helices, involved in the penetration into the cell membrane. The toxicity improvement could be probably due to the higher flexibility combined with the specific affinity toward dipteran larvae. The Cyt1A/B. thuringiensis kurstaki Cry toxins model provides a potential molecular genetic strategy for an efficient bioinsecticide.
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Affiliation(s)
- Raida Zribi Zghal
- Laboratory of Biopesticides, Centre of Biotechnology of Sfax, University of Sfax, Sfax, Tunisia.
| | - Fakher Frikha
- Department of Biology, Faculty of Sciences of Sfax, University of Sfax, Sfax, Tunisia
| | - Jihen Elleuch
- Laboratory of Biopesticides, Centre of Biotechnology of Sfax, University of Sfax, Sfax, Tunisia
| | - Frédéric Darriet
- Institut de Recherche pour le Développement (IRD), UMR MIVEGEC (UM1-UM2-CNRS 5290-IRD 224) Maladies Infectieuses et Vecteurs, Ecologie, Génétique, Evolution et Contrôle, Laboratoire de Lutte contre les Insectes Nuisibles (LIN), Montpellier, France
| | - Fabrice Chandre
- Institut de Recherche pour le Développement (IRD), UMR MIVEGEC (UM1-UM2-CNRS 5290-IRD 224) Maladies Infectieuses et Vecteurs, Ecologie, Génétique, Evolution et Contrôle, Laboratoire de Lutte contre les Insectes Nuisibles (LIN), Montpellier, France
| | - Samir Jaoua
- Biological & Environmental Sciences Department, College of Arts and Sciences, Qatar University, Doha, Qatar
| | - Slim Tounsi
- Laboratory of Biopesticides, Centre of Biotechnology of Sfax, University of Sfax, Sfax, Tunisia
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Nair K, Al-Thani R, Al-Thani D, Al-Yafei F, Ahmed T, Jaoua S. Diversity of Bacillus thuringiensis Strains From Qatar as Shown by Crystal Morphology, δ-Endotoxins and Cry Gene Content. Front Microbiol 2018; 9:708. [PMID: 29696009 PMCID: PMC5904277 DOI: 10.3389/fmicb.2018.00708] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2017] [Accepted: 03/27/2018] [Indexed: 11/29/2022] Open
Abstract
Bacillus thuringiensis (Bt) based insecticidal formulations have been recognized as one of the most successful, environmentally safe and sustainable method of controlling insect pests. Research teams worldwide are in search of Bt diversity giving more choices of bio-insecticides and alternatives to address insect resistance. In fact, there are many unexplored ecologies that could harbor novel Bt strains. This study is the first initiative to explore Bt strain diversity in Qatar. A collection of 700 Bt isolates was constructed. Scanning electron microscopy of Bt crystals showed different crystal forms, with a high abundance of spherical crystals compared to the bipyramidal ones. Among the spherical crystals, four different morphologies were observed. The δ-endotoxin content of parasporal crystals from each Bt isolate revealed that there are 16 different protein profiles among the isolates of the collection. On the other hand, plasmid pattern analysis showed seven different plasmid profiles. Their insecticidal activity was predicted by exploring the δ-endotoxin coding genes and conducting qualitative insecticidal bioassays. 19 smooth spherical crystal producing isolates have been identified that could be possible candidates for endotoxin production targeting Dipteran insects. Another group of 259 isolates producing bipyramidal and cuboidal crystals could target Lepidopteran and Coleopteran insects. The remaining 422 isolates have novel profiles. In conclusion, Qatari soil ecology provides a good collection and diversity of Bt isolates. In addition to strains harboring genes encoding common endotoxins, the majority are different and very promising for the search of novel insecticidal endotoxins.
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Affiliation(s)
- Kavita Nair
- Department of Biological and Environmental Sciences, College of Arts and Sciences, Qatar University, Doha, Qatar
| | - Roda Al-Thani
- Department of Biological and Environmental Sciences, College of Arts and Sciences, Qatar University, Doha, Qatar
| | - Dhabia Al-Thani
- Department of Biological and Environmental Sciences, College of Arts and Sciences, Qatar University, Doha, Qatar
| | - Fatima Al-Yafei
- Department of Biological and Environmental Sciences, College of Arts and Sciences, Qatar University, Doha, Qatar
| | - Talaat Ahmed
- Department of Biological and Environmental Sciences, College of Arts and Sciences, Qatar University, Doha, Qatar
| | - Samir Jaoua
- Department of Biological and Environmental Sciences, College of Arts and Sciences, Qatar University, Doha, Qatar
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Yang Y, Xu H, Lu Y, Wang C, Lu Z. Midgut transcriptomal response of the rice leaffolder, Cnaphalocrocis medinalis (Guenée) to Cry1C toxin. PLoS One 2018; 13:e0191686. [PMID: 29360856 PMCID: PMC5779695 DOI: 10.1371/journal.pone.0191686] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2017] [Accepted: 01/09/2018] [Indexed: 12/24/2022] Open
Abstract
Cnaphalocrocis medinalis (Guenée) is one of the important insect pests in rice field. Bt agents were recommended in the C. medinalis control and Bt rice is bred as a tactic to control this insect. However, the tolerance or resistance of insect to Bt protein is a main threat to the application of Bt protein. In order to investigate the response of C. medinalis transcriptome in defending a Cry1C toxin, high-through RNA-sequencing was carried in the C. medinalis larvae treated with and without Cry1C toxin. A total of 35,586 high-quality unigenes was annotated in the transcriptome of C. medinalis midgut. The comparative analysis identified 6,966 differently expressed unigenes (DEGs) between the two treatments. GO analysis showed that these genes involved in proteolysis and extracellular region. Among these DEGs, carboxylesterase, glutathione S-transferase and P450 were differently expressed in the treated C. medinalis midgut. Furthermore, trypsin, chymotrypsin, and carboxypeptidase were identified in DEGs, and most of them up-regulated. In addition, thirteen ABC transporters were downregulated and three upregulated in Cry1C-treated C. medinalis midgut. Based on the pathway analysis, antigen processing and presentation pathway, and chronic myeloid leukemia pathway were significant in C. medinalis treated with Cry1C toxin. These results indicated that serine protease, detoxification enzymes and ABC transporter, antigen processing and presentation pathway, and chronic myeloid leukemia pathway may involved in the response of C. medinalis to Cry1C toxin. This study provides a transcriptomal foundation for the identification and functional characterization of genes involved in the toxicity of Bt Cry protein against C. medinalis, and provides potential clues to the studies on the tolerance or resistance of an agriculturally important insect pest C. medinalis to Cry1C toxin.
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Affiliation(s)
- Yajun Yang
- State Key Laboratory Breeding Base for Zhejiang Sustainable Pest and Disease Control, Institute of Plant Protection and Microbiology, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
| | - Hongxing Xu
- State Key Laboratory Breeding Base for Zhejiang Sustainable Pest and Disease Control, Institute of Plant Protection and Microbiology, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
| | - Yanhui Lu
- State Key Laboratory Breeding Base for Zhejiang Sustainable Pest and Disease Control, Institute of Plant Protection and Microbiology, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
| | - Caiyun Wang
- State Key Laboratory Breeding Base for Zhejiang Sustainable Pest and Disease Control, Institute of Plant Protection and Microbiology, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
| | - Zhongxian Lu
- State Key Laboratory Breeding Base for Zhejiang Sustainable Pest and Disease Control, Institute of Plant Protection and Microbiology, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
- * E-mail:
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Jurat-Fuentes JL, Crickmore N. Specificity determinants for Cry insecticidal proteins: Insights from their mode of action. J Invertebr Pathol 2017; 142:5-10. [DOI: 10.1016/j.jip.2016.07.018] [Citation(s) in RCA: 81] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2016] [Revised: 06/02/2016] [Accepted: 07/28/2016] [Indexed: 12/17/2022]
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Elleuch J, Jaoua S, Ginibre C, Chandre F, Tounsi S, Zghal RZ. Toxin stability improvement and toxicity increase against dipteran and lepidopteran larvae of Bacillus thuringiensis crystal protein Cry2Aa. PEST MANAGEMENT SCIENCE 2016; 72:2240-2246. [PMID: 26910489 DOI: 10.1002/ps.4261] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2015] [Revised: 01/24/2016] [Accepted: 02/17/2016] [Indexed: 06/05/2023]
Abstract
BACKGROUND Bacillus thuringiensis δ-endotoxins are the most widely used biopesticides for controlling economically important crop pests and disease vectors. Improving their efficacy is of great benefit. Here, an improvement in Cry2Aa δ-endotoxin toxicity was attempted via a cry gene over expression system using P20 from B. thuringiensis israelensis. RESULTS The coexpression of Cry2Aa with P20 resulted in a seven fold increase in its production yield in B. thuringiensis. Generated crystals proved to be significantly more toxic (505.207 µg g-1 , 1.99 mg L-1 and 1.49 mg L-1 ) than the P20-lacking control (720.78 µg g-1 , 705.69 mg L-1 and 508.51 mg L-1 ) against Ephestia kuehniella, Aedes aegypti and Culex pipiens larvae respectively. In vitro, processing experiments revealed a P20-mediated protection of Cry2Aa against degradation under larval gut conditions. Thus, P20 could promote the maintenance of a tightly packaged conformation of Cry2Aa toxins in the larval midgut upon correct activation and binding to its membrane receptors. CONCLUSION Based on their resistance against excessive proteolysis, Cry2Aa δ-endotoxins, produced in the presence of P20, could be considered as a successful control agent for E. kuehniella and an effective alternative for mosquito control, implying its possible exploitation in pest management programmes. © 2016 Society of Chemical Industry.
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Affiliation(s)
- Jihen Elleuch
- Laboratory of Biopesticides, Centre of Biotechnology of Sfax, University of Sfax, Sfax, Tunisia
| | - Samir Jaoua
- Department of Biological and Environmental Sciences, College of Arts Sciences, Qatar University, Doha, Qatar
| | - Carole Ginibre
- Institut de Recherche pour le Développement (IRD), UMR MIVEGEC (UM1-UM2-CNRS 5290-IRD 224) Maladies Infectieuses et Vecteurs, Ecologie, Génétique, Evolution et Contrôle, Laboratoire de Lutte contre les Insectes Nuisibles (LIN), Montpellier, France
| | - Fabrice Chandre
- Institut de Recherche pour le Développement (IRD), UMR MIVEGEC (UM1-UM2-CNRS 5290-IRD 224) Maladies Infectieuses et Vecteurs, Ecologie, Génétique, Evolution et Contrôle, Laboratoire de Lutte contre les Insectes Nuisibles (LIN), Montpellier, France
| | - Slim Tounsi
- Laboratory of Biopesticides, Centre of Biotechnology of Sfax, University of Sfax, Sfax, Tunisia
| | - Raida Z Zghal
- Laboratory of Biopesticides, Centre of Biotechnology of Sfax, University of Sfax, Sfax, Tunisia.
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Elleuch J, Jaoua S, Tounsi S, Zghal RZ. Cry1Ac toxicity enhancement towards lepidopteran pest Ephestia kuehniella through its protection against excessive proteolysis. Toxicon 2016; 120:42-8. [DOI: 10.1016/j.toxicon.2016.07.014] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2016] [Revised: 07/15/2016] [Accepted: 07/20/2016] [Indexed: 10/21/2022]
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