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Zhang T, Wang Y, Sun J, Liang J, Wang B, Xu X, Xu J, Liu L. Precision in wheat flour classification: Harnessing the power of deep learning and two-dimensional correlation spectrum (2DCOS). SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 314:124112. [PMID: 38518439 DOI: 10.1016/j.saa.2024.124112] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2023] [Revised: 02/28/2024] [Accepted: 03/02/2024] [Indexed: 03/24/2024]
Abstract
Wheat flour is a ubiquitous food ingredient, yet discerning its various types can prove challenging. A practical approach for identifying wheat flour types involves analyzing one-dimensional near-infrared spectroscopy (NIRS) data. This paper introduces an innovative method for wheat flour recognition, combining deep learning (DL) with Two-dimensional correlation spectrum (2DCOS). In this investigation, 316 samples from four distinct types of wheat flour were collected using a near-infrared (NIR) spectrometer, and the raw spectra of each sample underwent preprocessing employing diverse methods. The discrete generalized 2DCOS algorithm was applied to generate 3792 2DCOS images from the preprocessed spectral data. We trained a deep learning model tailored for flour 2DCOS images - EfficientNet. Ultimately, this DL model achieved 100% accuracy in identifying wheat flour within the test set. The findings demonstrate the viability of directly transforming spectra into two-dimensional images for species recognition using 2DCOS and DL. Compared to the traditional stoichiometric method Partial Least Squares Discriminant Analysis (PLS_DA), machine learning methods Support Vector Machines (SVM) and K-Nearest Neighbors (KNN), and deep learning methods one-dimensional convolutional neural network (1DCNN) and residual neural network (ResNet), the model proposed in this paper is better suited for wheat flour identification, boasting the highest accuracy. This study offers a fresh perspective on wheat flour type identification and successfully integrates the latest advancements in deep learning with 2DCOS for spectral type identification. Furthermore, this approach can be extended to the spectral identification of other products, presenting a novel avenue for future research in the field.
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Affiliation(s)
- Tianrui Zhang
- College of Artificial Intelligence, Nankai University, Tianjin 300350, China
| | - Yifan Wang
- College of Artificial Intelligence, Nankai University, Tianjin 300350, China
| | - Jiansong Sun
- College of Artificial Intelligence, Nankai University, Tianjin 300350, China
| | - Jing Liang
- College of Artificial Intelligence, Nankai University, Tianjin 300350, China
| | - Bin Wang
- College of Artificial Intelligence, Nankai University, Tianjin 300350, China.
| | - Xiaoxuan Xu
- College of Artificial Intelligence, Nankai University, Tianjin 300350, China; Yunnan Research Institute, Nankai University, Kunming 650091, China
| | - Jing Xu
- College of Artificial Intelligence, Nankai University, Tianjin 300350, China
| | - Lei Liu
- College of Artificial Intelligence, Nankai University, Tianjin 300350, China
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Zhang W, Kasun LC, Wang QJ, Zheng Y, Lin Z. A Review of Machine Learning for Near-Infrared Spectroscopy. SENSORS (BASEL, SWITZERLAND) 2022; 22:s22249764. [PMID: 36560133 PMCID: PMC9784128 DOI: 10.3390/s22249764] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2022] [Revised: 12/04/2022] [Accepted: 12/05/2022] [Indexed: 06/01/2023]
Abstract
The analysis of infrared spectroscopy of substances is a non-invasive measurement technique that can be used in analytics. Although the main objective of this study is to provide a review of machine learning (ML) algorithms that have been reported for analyzing near-infrared (NIR) spectroscopy from traditional machine learning methods to deep network architectures, we also provide different NIR measurement modes, instruments, signal preprocessing methods, etc. Firstly, four different measurement modes available in NIR are reviewed, different types of NIR instruments are compared, and a summary of NIR data analysis methods is provided. Secondly, the public NIR spectroscopy datasets are briefly discussed, with links provided. Thirdly, the widely used data preprocessing and feature selection algorithms that have been reported for NIR spectroscopy are presented. Then, the majority of the traditional machine learning methods and deep network architectures that are commonly employed are covered. Finally, we conclude that developing the integration of a variety of machine learning algorithms in an efficient and lightweight manner is a significant future research direction.
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Affiliation(s)
- Wenwen Zhang
- School of Electrical and Electronic Engnineering, Nanyang Technological University, Singapore 639798, Singapore
| | | | - Qi Jie Wang
- School of Electrical and Electronic Engnineering, Nanyang Technological University, Singapore 639798, Singapore
- School of Physical and Mathematical Sciences, Nanyang Technological University, Singapore 637371, Singapore
| | - Yuanjin Zheng
- School of Electrical and Electronic Engnineering, Nanyang Technological University, Singapore 639798, Singapore
| | - Zhiping Lin
- School of Electrical and Electronic Engnineering, Nanyang Technological University, Singapore 639798, Singapore
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Zhai J, Luo B, Li A, Dong H, Jin X, Wang X. Unlocking All-Solid Ion Selective Electrodes: Prospects in Crop Detection. SENSORS (BASEL, SWITZERLAND) 2022; 22:5541. [PMID: 35898054 PMCID: PMC9331676 DOI: 10.3390/s22155541] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/04/2022] [Revised: 07/20/2022] [Accepted: 07/21/2022] [Indexed: 06/15/2023]
Abstract
This paper reviews the development of all-solid-state ion-selective electrodes (ASSISEs) for agricultural crop detection. Both nutrient ions and heavy metal ions inside and outside the plant have a significant influence on crop growth. This review begins with the detection principle of ASSISEs. The second section introduces the key characteristics of ASSISE and demonstrates its feasibility in crop detection based on previous research. The third section considers the development of ASSISEs in the detection of corps internally and externally (e.g., crop nutrition, heavy metal pollution, soil salinization, N enrichment, and sensor miniaturization, etc.) and discusses the interference of the test environment. The suggestions and conclusions discussed in this paper may provide the foundation for additional research into ion detection for crops.
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Affiliation(s)
- Jiawei Zhai
- Research Center of Intelligent Equipment, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China; (J.Z.); (B.L.); (A.L.); (H.D.); (X.J.)
- College of Mechanical and Electrical Engineering, Fujian Agriculture and Forestry University, Fuzhou 350108, China
| | - Bin Luo
- Research Center of Intelligent Equipment, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China; (J.Z.); (B.L.); (A.L.); (H.D.); (X.J.)
| | - Aixue Li
- Research Center of Intelligent Equipment, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China; (J.Z.); (B.L.); (A.L.); (H.D.); (X.J.)
| | - Hongtu Dong
- Research Center of Intelligent Equipment, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China; (J.Z.); (B.L.); (A.L.); (H.D.); (X.J.)
| | - Xiaotong Jin
- Research Center of Intelligent Equipment, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China; (J.Z.); (B.L.); (A.L.); (H.D.); (X.J.)
| | - Xiaodong Wang
- Research Center of Intelligent Equipment, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China; (J.Z.); (B.L.); (A.L.); (H.D.); (X.J.)
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Chen X, Li J, Liu H, Wang Y. A fast multi-source information fusion strategy based on deep learning for species identification of boletes. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2022; 274:121137. [PMID: 35290943 DOI: 10.1016/j.saa.2022.121137] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Revised: 02/24/2022] [Accepted: 03/08/2022] [Indexed: 06/14/2023]
Abstract
Wild mushroom market is an important economic source of Yunnan province in China, and its wild mushroom resources are also valuable wealth in the world. This work will put forward a method of species identification and optimize the method in order to maintain the market order and protect the economic benefits of wild mushrooms. Here we establish deep learning (DL) models based on the two-dimensional correlation spectroscopy (2DCOS) images of near-infrared spectroscopy from boletes, and optimize the identification effect of the model. The results show that synchronous 2DCOS is the best method to establish DL model, and when the learning rate was 0.01, the epochs were 40, using stipes and caps data, the identification effect would be further improved. This method retains the complete information of the samples and can provide a fast and noninvasive method for identifying boletes species for market regulators.
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Affiliation(s)
- Xiong Chen
- College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming 650201, China; Medicinal Plants Research Institute, Yunnan Academy of Agricultural Sciences, Kunming 650200, China
| | - Jieqing Li
- College of Resources and Environmental, Yunnan Agricultural University, Kunming 650201, China
| | - Honggao Liu
- College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming 650201, China; Zhaotong University, Zhaotong 657000, China.
| | - Yuanzhong Wang
- Medicinal Plants Research Institute, Yunnan Academy of Agricultural Sciences, Kunming 650200, China.
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Ondrasek G, Rathod S, Manohara KK, Gireesh C, Anantha MS, Sakhare AS, Parmar B, Yadav BK, Bandumula N, Raihan F, Zielińska-Chmielewska A, Meriño-Gergichevich C, Reyes-Díaz M, Khan A, Panfilova O, Seguel Fuentealba A, Romero SM, Nabil B, Wan C(C, Shepherd J, Horvatinec J. Salt Stress in Plants and Mitigation Approaches. PLANTS (BASEL, SWITZERLAND) 2022; 11:plants11060717. [PMID: 35336599 PMCID: PMC8950276 DOI: 10.3390/plants11060717] [Citation(s) in RCA: 47] [Impact Index Per Article: 23.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/08/2022] [Revised: 02/26/2022] [Accepted: 02/26/2022] [Indexed: 02/07/2023]
Abstract
Salinization of soils and freshwater resources by natural processes and/or human activities has become an increasing issue that affects environmental services and socioeconomic relations. In addition, salinization jeopardizes agroecosystems, inducing salt stress in most cultivated plants (nutrient deficiency, pH and oxidative stress, biomass reduction), and directly affects the quality and quantity of food production. Depending on the type of salt/stress (alkaline or pH-neutral), specific approaches and solutions should be applied to ameliorate the situation on-site. Various agro-hydrotechnical (soil and water conservation, reduced tillage, mulching, rainwater harvesting, irrigation and drainage, control of seawater intrusion), biological (agroforestry, multi-cropping, cultivation of salt-resistant species, bacterial inoculation, promotion of mycorrhiza, grafting with salt-resistant rootstocks), chemical (application of organic and mineral amendments, phytohormones), bio-ecological (breeding, desalination, application of nano-based products, seed biopriming), and/or institutional solutions (salinity monitoring, integrated national and regional strategies) are very effective against salinity/salt stress and numerous other constraints. Advances in computer science (artificial intelligence, machine learning) provide rapid predictions of salinization processes from the field to the global scale, under numerous scenarios, including climate change. Thus, these results represent a comprehensive outcome and tool for a multidisciplinary approach to protect and control salinization, minimizing damages caused by salt stress.
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Affiliation(s)
- Gabrijel Ondrasek
- Faculty of Agriculture, The University of Zagreb, Svetosimunska c. 25, 10000 Zagreb, Croatia; (J.S.); (J.H.)
- Correspondence:
| | - Santosha Rathod
- ICAR—Indian Institute of Rice Research, Hyderabad 500030, India; (S.R.); (C.G.); (M.S.A.); (A.S.S.); (B.P.); (N.B.)
| | | | - Channappa Gireesh
- ICAR—Indian Institute of Rice Research, Hyderabad 500030, India; (S.R.); (C.G.); (M.S.A.); (A.S.S.); (B.P.); (N.B.)
| | | | - Akshay Sureshrao Sakhare
- ICAR—Indian Institute of Rice Research, Hyderabad 500030, India; (S.R.); (C.G.); (M.S.A.); (A.S.S.); (B.P.); (N.B.)
| | - Brajendra Parmar
- ICAR—Indian Institute of Rice Research, Hyderabad 500030, India; (S.R.); (C.G.); (M.S.A.); (A.S.S.); (B.P.); (N.B.)
| | | | - Nirmala Bandumula
- ICAR—Indian Institute of Rice Research, Hyderabad 500030, India; (S.R.); (C.G.); (M.S.A.); (A.S.S.); (B.P.); (N.B.)
| | - Farzana Raihan
- Department of Forestry and Environmental Sciences, Shahjalal University of Science and Technology, Sylhet 3114, Bangladesh;
| | - Anna Zielińska-Chmielewska
- Department of Business Activity and Economic Policy, Institute of Economics, Poznań University of Economics and Business, Al. Niepodległości 10, 61-875 Poznań, Poland;
| | - Cristian Meriño-Gergichevich
- Center of Plant, Soil Interaction and Natural Resources Biotechnology, Scientific and Technological Bioresource Nucleus, Universidad de La Frontera, Temuco 4780000, Chile;
| | - Marjorie Reyes-Díaz
- Departamento de Ciencias Químicas y Recursos Naturales, Facultad de Ingeniería y Ciencias, Universidad de La Frontera, Temuco 4780000, Chile;
| | - Amanullah Khan
- Department of Agronomy, Faculty of Crop Production Sciences, The University of Agriculture, Peshawar 25130, Pakistan;
| | - Olga Panfilova
- Russian Research Institute of Fruit Crop Breeding (VNIISPK), 302530 Zhilina, Orel District, Orel Region, Russia;
| | - Alex Seguel Fuentealba
- Departamento de Ciencias Agronómicas y Recursos Naturales, Facultad de Ciencias Agropecuarias y Forestales, Universidad de La Frontera, Temuco 4780000, Chile;
| | | | - Beithou Nabil
- Mechanical and Industrial Engineering Department, Applied Science Private University, Amman 11931, Jordan;
| | - Chunpeng (Craig) Wan
- Jiangxi Key Laboratory for Postharvest Technology and Nondestructive Testing of Fruits & Vegetables, College of Agronomy, Jiangxi Agricultural University, Nanchang 330045, China;
| | - Jonti Shepherd
- Faculty of Agriculture, The University of Zagreb, Svetosimunska c. 25, 10000 Zagreb, Croatia; (J.S.); (J.H.)
| | - Jelena Horvatinec
- Faculty of Agriculture, The University of Zagreb, Svetosimunska c. 25, 10000 Zagreb, Croatia; (J.S.); (J.H.)
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Estimation of Salinity Content in Different Saline-Alkali Zones Based on Machine Learning Model Using FOD Pretreatment Method. REMOTE SENSING 2021. [DOI: 10.3390/rs13245140] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Soil salinization is a global ecological and environmental problem in arid and semi-arid areas that can be ameliorated via soil management, visible-near infrared-shortwave infrared (VNIR-SWIR) spectroscopy can be adapted to rapidly monitor soil salinity content. This study explored the potential of Grünwald–Letnikov fractional-order derivative (FOD), feature band selection methods, nonlinear partial least squares regression (PLSR), and four machine learning models to estimate the soil salinity content using VNIR-SWIR spectra. Ninety sample points were field scanned with VNIR-SWR and soil samples (0–20 cm) were obtained at the time of scanning. The samples points come from three zones representing different intensities of human interference (I, II, and III Zones) in Fukang, Xinjiang, China. Each zone contained thirty sample points. For modeling, we firstly adopted FOD (with intervals of 0.1 and range of 0–2) as a preprocessing method to analyze soil hyperspectral data. Then, four sets of spectral bands (R-FOD-FULL indicates full band range, R-FOD-CC5 bands that met a 0.05 significance test, R-FOD-CC1 bands that met a 0.01 significance test, and R-FOD-CC1-CARS represents CC1 combined with competitive adaptive reweighted sampling) were selected as spectral input variables to develop the estimation model. Finally, four machine learning models, namely, generalized regression neural network (GRNN), extreme learning machine (ELM), random forest (RF), and PLSR, to estimate soil salinity. Study results showed that (1) the heat map of correlation coefficient matrix between hyperspectral data and salinity indicated that FOD significantly improved the correlation. (2) The characteristic band variables extracted and used by R-FOD-CC1 were fewer in number, and redundancy between bands smaller than R-FOD-FULL and R-FOD-CC5, thus estimation accuracy of R-FOD-CC1 was higher than R-FOD-CC5 or R-FOD-FULL. A high prediction accuracy was achieved with a less complex calculation. (3) The GRNN model yielded the best salinity estimation in all three zones compared to ELM, BPNN, RF, and PLSR on the whole, whereas, the RF model had the worst estimation effect. The R-FOD-CC1-CARS-GRNN model yielded the best salinity estimation in I Zone with R2, RMSE and RPD of 0.7784, 1.8762, and 2.0568, respectively. The fractional order was 1.5 and estimation performance was great. The optimal model for predicting soil salinity in II and III Zone was, also, R-FOD-CC1-CARS-GRNN (R2 = 0.7912, RMSE = 3.4001, and RPD = 1.8985 in II Zone; R2 = 0.8192, RMSE = 6.6260, and RPD = 1.8190 in III Zone), with the fractional order of 1.7- and 1.6-, respectively, and the estimation performance were all fine. (4) The characteristic bands selected by the best model in I, II, and III Zones were 8, 9, and 11, respectively, which account for 0.45%, 0.51%, and 0.63%% of the full bands. This approach reduces the number of modeled band variables and simplifies the model structure.
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Two-dimensional correlation spectroscopy combined with deep learning method and HPLC method to identify the storage duration of porcini. Microchem J 2021. [DOI: 10.1016/j.microc.2021.106670] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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Abstract
To address the global phenomenon of the salinisation of large land areas, a quantitative inversion model of the salinity of saline soils and soil visible–near-infrared (NIR) spectral data was developed by considering saline soils in Zhenlai County, Jilin Province, China as the research object. The original spectral data were first subjected to Savitzky–Golay (SG) smoothing, multiplicative scattering correction (MSC) pre-processing, and a combined transformation technique. The pre-processed spectral data were then analysed to construct the difference index (DI), ratio index (RI), and normalised difference index (NDI), and the Spearman rank correlation coefficient (r) between these three spectral indices and the salt content in the samples was calculated, while a combined spectral index (r > 0.8) was eventually selected as a sensitive spectral index. Finally, a quantitative inversion model for the salinity of saline soils was developed, and the model’s accuracy was evaluated based on partial least squares regression (PLSR), the random forest (RF) algorithm, and the radial basis function (RBF) neural network algorithm. The results indicated that the inversion of soil salt content using the selected combination of spectral indices based on the RBF neural network algorithm was the most effective, with the prediction model yielding an R2 value of 0.950, a root mean square error (RMSE) of 1.014, and a relative percentage deviation (RPD) of 4.479, which suggested a good prediction effect.
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Xing P, Dong J, Yu P, Zheng H, Liu X, Hu S, Zhu Z. Quantitative analysis of lithium in brine by laser-induced breakdown spectroscopy based on convolutional neural network. Anal Chim Acta 2021; 1178:338799. [PMID: 34482868 DOI: 10.1016/j.aca.2021.338799] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2021] [Revised: 05/27/2021] [Accepted: 06/15/2021] [Indexed: 12/22/2022]
Abstract
In this study, a simple and effective method for accurate determination of lithium in brine samples was developed by the combination of laser induced breakdown spectroscopy (LIBS) and convolutional neural network (CNN). Our results clearly demonstrate that the use of CNN could efficiently overcome the complex matrix effects, and thus allows for on-site Li quantitative determination in brine samples by LIBS. Specifically, two CNN models with different input data (M-CNN with matrix emission lines, and DP-CNN with double Li lines) were constructed based on the primary matrix features on spectrum and Boltzmann equation, respectively. It was observed that DP-CNN model could greatly improve the accuracy of Li analysis. We also compared the quantitative analysis capabilities of DP-CNN model with partial least squares regression (PLSR) and principal component analysis-support vector regression (PCA-SVR) model, and the results clearly showed DP-CNN offers the best quantification results (higher accuracy and less matrix interference). Finally, five real brine samples were successfully analyzed by the proposed DP-CNN model, confirming by the average absolute error of the prediction of 0.28 mg L-1 and the average relative error of 3.48%. These results clearly demonstrate that input data plays an important role in the training of CNN model in LIBS analysis, and the proposed DP-CNN provides an effective approach to solve the matrix effects encountered in LIBS for Li measurement in brine samples.
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Affiliation(s)
- Pengju Xing
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences, Wuhan, Hubei, 430078, China
| | - Junhang Dong
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences, Wuhan, Hubei, 430078, China; Faculty of Material Science and Chemistry, China University of Geosciences, Wuhan, Hubei, 430078, China
| | - Peiwen Yu
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences, Wuhan, Hubei, 430078, China
| | - Hongtao Zheng
- Faculty of Material Science and Chemistry, China University of Geosciences, Wuhan, Hubei, 430078, China
| | - Xing Liu
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences, Wuhan, Hubei, 430078, China
| | - Shenghong Hu
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences, Wuhan, Hubei, 430078, China
| | - Zhenli Zhu
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences, Wuhan, Hubei, 430078, China; Faculty of Material Science and Chemistry, China University of Geosciences, Wuhan, Hubei, 430078, China.
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