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Abrantes G, Almeida V, Maia AJ, Nascimento R, Nascimento C, Silva Y, Silva Y, Veras G. Comparison between Variable-Selection Algorithms in PLS Regression with Near-Infrared Spectroscopy to Predict Selected Metals in Soil. Molecules 2023; 28:6959. [PMID: 37836802 PMCID: PMC10574190 DOI: 10.3390/molecules28196959] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2023] [Revised: 09/29/2023] [Accepted: 10/03/2023] [Indexed: 10/15/2023] Open
Abstract
Soil is one of the Earth's most important natural resources. The presence of metals can decrease environmental quality if present in excessive amounts. Analyzing soil metal contents can be costly and time consuming, but near-infrared (NIR) spectroscopy coupled with chemometric tools can offer an alternative. The most important multivariate calibration method to predict concentrations or physical, chemical or physicochemical properties as a chemometric tool is partial least-squares (PLS) regression. However, a large number of irrelevant variables may cause problems of accuracy in the predictive chemometric models. Thus, stochastic variable-selection techniques, such as the Firefly algorithm by intervals in PLS (FFiPLS), can provide better solutions for specific problems. This study aimed to evaluate the performance of FFiPLS against deterministic PLS algorithms for the prediction of metals in river basin soils. The samples had their spectra collected from the region of 1000-2500 nm. Predictive models were then built from the spectral data, including PLS, interval-PLS (iPLS), successive projections algorithm for interval selection in PLS (iSPA-PLS), and FFiPLS. The chemometric models were built with raw data and preprocessed data by using different methods such as multiplicative scatter correction (MSC), standard normal variate (SNV), mean centering, adjustment of baseline and smoothing by the Savitzky-Golay method. The elliptical joint confidence region (EJCR) used in each chemometric model presented adequate fit. FFiPLS models of iron and titanium obtained a relative prediction deviation (RPD) of more than 2. The chemometric models for determination of aluminum obtained an RPD of more than 2 in the preprocessed data with SNV, MSC and baseline (offset + linear) and with raw data. The metals Be, Gd and Y failed to obtain adequate models in terms of residual prediction deviation (RPD). These results are associated with the low values of metals in the samples. Considering the complexity of the samples, the relative error of prediction (REP) obtained between 10 and 25% of the values adequate for this type of sample. Root mean square error of calibration and prediction (RMSEC and RMSEP, respectively) presented the same profile as the other quality parameters. The FFiPLS algorithm outperformed deterministic algorithms in the construction of models estimating the content of Al, Be, Gd and Y. This study produced chemometric models with variable selection able to determine metals in the Ipojuca River watershed soils using reflectance-mode NIR spectrometry.
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Affiliation(s)
- Giovanna Abrantes
- Departamento de Química, Centro de Ciência e Tecnologia, Universidade Estadual da Paraíba, Campina Grande 58429-500, Brazil; (G.A.); (V.A.)
| | - Valber Almeida
- Departamento de Química, Centro de Ciência e Tecnologia, Universidade Estadual da Paraíba, Campina Grande 58429-500, Brazil; (G.A.); (V.A.)
| | - Angelo Jamil Maia
- Agronomy Department, Federal Rural University of Pernambuco, Recife 52171-900, Brazil; (A.J.M.); (R.N.); (C.N.); (Y.S.)
| | - Rennan Nascimento
- Agronomy Department, Federal Rural University of Pernambuco, Recife 52171-900, Brazil; (A.J.M.); (R.N.); (C.N.); (Y.S.)
| | - Clistenes Nascimento
- Agronomy Department, Federal Rural University of Pernambuco, Recife 52171-900, Brazil; (A.J.M.); (R.N.); (C.N.); (Y.S.)
| | - Ygor Silva
- Agronomy Department, Federal Rural University of Pernambuco, Recife 52171-900, Brazil; (A.J.M.); (R.N.); (C.N.); (Y.S.)
| | - Yuri Silva
- Agronomy Department, Federal University of Piauí, Bom Jesus 64900-000, Brazil;
| | - Germano Veras
- Departamento de Química, Centro de Ciência e Tecnologia, Universidade Estadual da Paraíba, Campina Grande 58429-500, Brazil; (G.A.); (V.A.)
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Jin X, Ba W, Wang L, Zhang T, Zhang X, Li S, Rao Y, Liu L. A Novel Tran_NAS Method for the Identification of Fe- and Mg-Deficient Pear Leaves from N- and P-Deficient Pear Leaf Data. ACS OMEGA 2022; 7:39727-39741. [PMID: 36385829 PMCID: PMC9648133 DOI: 10.1021/acsomega.2c03596] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/08/2022] [Accepted: 09/06/2022] [Indexed: 06/16/2023]
Abstract
Trace element deficiency diagnosis plays a critical role in pear cultivation. However, high-quality diagnostic models are challenging to investigate, making it difficult to collect samples. Therefore, this manuscript developed a novel transfer learning method, named Tran_NAS, with a fine-tuning neural network that uses a neural architecture search (NAS) to transfer learning from nitrogen (N) and phosphorus (P) to iron (Fe) and magnesium (Mg) to diagnose pear leaf element deficiencies. The best accuracy of the transferred NAS model is 89.12%, which is 11% more than that of the model without the transfer of trace element-deficient samples. Meanwhile, Tran_NAS also has better performance on source datasets after comparing with different proportions of training sets. Finally, this manuscript summarizes the transfer model coincident characteristics, including the methods of batch normalization (BN) and dropout layers, which make the model more generalizable. This manuscript applies a symmetric homogeneous feature-based transfer learning method on NAS that is designed explicitly for near-infrared (NIR) data collected from nutrient-deficient pear leaves. The novel transfer learning method would be more effective for the micro-NIR spectrum of the nondestructive diagnosis.
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Affiliation(s)
- Xiu Jin
- Anhui
Province Key Laboratory of Smart Agricultural Technology and Equipment, Anhui Agricultural University, Hefei230001, China
- College
of Information and Computer Science, Anhui
Agricultural University, Hefei230001, China
| | - Wenjing Ba
- Anhui
Province Key Laboratory of Smart Agricultural Technology and Equipment, Anhui Agricultural University, Hefei230001, China
- College
of Information and Computer Science, Anhui
Agricultural University, Hefei230001, China
| | - Lianglong Wang
- Anhui
Province Key Laboratory of Smart Agricultural Technology and Equipment, Anhui Agricultural University, Hefei230001, China
- College
of Information and Computer Science, Anhui
Agricultural University, Hefei230001, China
| | - Tong Zhang
- Anhui
Province Key Laboratory of Smart Agricultural Technology and Equipment, Anhui Agricultural University, Hefei230001, China
- College
of Information and Computer Science, Anhui
Agricultural University, Hefei230001, China
| | - Xiaodan Zhang
- Anhui
Province Key Laboratory of Smart Agricultural Technology and Equipment, Anhui Agricultural University, Hefei230001, China
- College
of Information and Computer Science, Anhui
Agricultural University, Hefei230001, China
| | - Shaowen Li
- Anhui
Province Key Laboratory of Smart Agricultural Technology and Equipment, Anhui Agricultural University, Hefei230001, China
- College
of Information and Computer Science, Anhui
Agricultural University, Hefei230001, China
| | - Yuan Rao
- Anhui
Province Key Laboratory of Smart Agricultural Technology and Equipment, Anhui Agricultural University, Hefei230001, China
- College
of Information and Computer Science, Anhui
Agricultural University, Hefei230001, China
| | - Li Liu
- Anhui
Province Key Laboratory of Smart Agricultural Technology and Equipment, Anhui Agricultural University, Hefei230001, China
- College
of Horticulture, Anhui Agricultural University, Hefei230001, China
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Monitoring and Predicting Channel Morphology of the Tongtian River, Headwater of the Yangtze River Using Landsat Images and Lightweight Neural Network. REMOTE SENSING 2022. [DOI: 10.3390/rs14133107] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
The Tongtian River is the source of the Yangtze River and is a national key ecological reserve in China. Monitoring and predicting the changes and mechanisms of the Tongtian River channel morphology are beneficial to protecting the “Asian Water Tower”. This study aims to quantitatively monitor and predict the accretion and erosion area of the Tongtian River channel morphology during the past 30 years (1990–2020). Firstly, the water bodies of the Tongtian River were extracted and the accretion and erosion areas were quantified using 1108 Landsat images based on the combined method of three water-body indices and a threshold, and the surface-water dataset provided by the European Commission Joint Research Centre. Secondly, an intelligent lightweight neural-network model was constructed to predict and analyze the accretion and erosion area of the Tongtian River. Results indicate that the Tongtian River experienced apparent accretion and erosion with a total area of 98.3 and 94.9 km2, respectively, during 1990–2020. The braided (meandering) reaches at the upper (lower) Tongtian River exhibit an overall trend of accretion (erosion). The Tongtian River channel morphology was determined by the synergistic effect of sediment-transport velocity and streamflow. The lightweight neural network well-reproduced the complex nonlinear processes in the river-channel morphology with a final prediction error of 0.0048 km2 for the training session and 4.6 km2 for the test session. Results in this study provide more effective, reasonable, and scientific decision-making aids for monitoring, protecting, understanding, and mining the evolution characteristics of rivers, especially the complex change processes of braided river channels in alpine regions and developing countries.
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