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Theillet FX, Luchinat E. In-cell NMR: Why and how? PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2022; 132-133:1-112. [PMID: 36496255 DOI: 10.1016/j.pnmrs.2022.04.002] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2021] [Revised: 04/19/2022] [Accepted: 04/27/2022] [Indexed: 06/17/2023]
Abstract
NMR spectroscopy has been applied to cells and tissues analysis since its beginnings, as early as 1950. We have attempted to gather here in a didactic fashion the broad diversity of data and ideas that emerged from NMR investigations on living cells. Covering a large proportion of the periodic table, NMR spectroscopy permits scrutiny of a great variety of atomic nuclei in all living organisms non-invasively. It has thus provided quantitative information on cellular atoms and their chemical environment, dynamics, or interactions. We will show that NMR studies have generated valuable knowledge on a vast array of cellular molecules and events, from water, salts, metabolites, cell walls, proteins, nucleic acids, drugs and drug targets, to pH, redox equilibria and chemical reactions. The characterization of such a multitude of objects at the atomic scale has thus shaped our mental representation of cellular life at multiple levels, together with major techniques like mass-spectrometry or microscopies. NMR studies on cells has accompanied the developments of MRI and metabolomics, and various subfields have flourished, coined with appealing names: fluxomics, foodomics, MRI and MRS (i.e. imaging and localized spectroscopy of living tissues, respectively), whole-cell NMR, on-cell ligand-based NMR, systems NMR, cellular structural biology, in-cell NMR… All these have not grown separately, but rather by reinforcing each other like a braided trunk. Hence, we try here to provide an analytical account of a large ensemble of intricately linked approaches, whose integration has been and will be key to their success. We present extensive overviews, firstly on the various types of information provided by NMR in a cellular environment (the "why", oriented towards a broad readership), and secondly on the employed NMR techniques and setups (the "how", where we discuss the past, current and future methods). Each subsection is constructed as a historical anthology, showing how the intrinsic properties of NMR spectroscopy and its developments structured the accessible knowledge on cellular phenomena. Using this systematic approach, we sought i) to make this review accessible to the broadest audience and ii) to highlight some early techniques that may find renewed interest. Finally, we present a brief discussion on what may be potential and desirable developments in the context of integrative studies in biology.
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Affiliation(s)
- Francois-Xavier Theillet
- Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198 Gif-sur-Yvette, France.
| | - Enrico Luchinat
- Dipartimento di Scienze e Tecnologie Agro-Alimentari, Alma Mater Studiorum - Università di Bologna, Piazza Goidanich 60, 47521 Cesena, Italy; CERM - Magnetic Resonance Center, and Neurofarba Department, Università degli Studi di Firenze, 50019 Sesto Fiorentino, Italy
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2
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On-Line Monitoring of Biological Parameters in Microalgal Bioprocesses Using Optical Methods. ENERGIES 2022. [DOI: 10.3390/en15030875] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Microalgae are promising sources of fuels and other chemicals. To operate microalgal cultivations efficiently, process control based on monitoring of process variables is needed. On-line sensing has important advantages over off-line and other analytical and sensing methods in minimizing the measurement delay. Consequently, on-line, in-situ sensors are preferred. In this respect, optical sensors occupy a central position since they are versatile and readily implemented in an on-line format. In biotechnological processes, measurements are performed in three phases (gaseous, liquid and solid (biomass)), and monitored process variables can be classified as physical, chemical and biological. On-line sensing technologies that rely on standard industrial sensors employed in chemical processes are already well-established for monitoring the physical and chemical environment of an algal cultivation. In contrast, on-line sensors for the process variables of the biological phase, whether biomass, intracellular or extracellular products, or the physiological state of living cells, are at an earlier developmental stage and are the focus of this review. On-line monitoring of biological process variables is much more difficult and sometimes impossible and must rely on indirect measurement and extensive data processing. In contrast to other recent reviews, this review concentrates on current methods and technologies for monitoring of biological parameters in microalgal cultivations that are suitable for the on-line and in-situ implementation. These parameters include cell concentration, chlorophyll content, irradiance, and lipid and pigment concentration and are measured using NMR, IR spectrophotometry, dielectric scattering, and multispectral methods. An important part of the review is the computer-aided monitoring of microalgal cultivations in the form of software sensors, the use of multi-parameter measurements in mathematical process models, fuzzy logic and artificial neural networks. In the future, software sensors will play an increasing role in the real-time estimation of biological variables because of their flexibility and extendibility.
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Yang C, Lingli C, Meijin G, Xu L, Jinsong L, Xiaofeng L, Zhongbing C, Xiaojun T, Haoyue Z, Xiwei T, Ju C, Yingping Z. Application of near-infrared spectroscopy technology in the complex fermentation system to achieve high-efficiency production. BIORESOUR BIOPROCESS 2021; 8:96. [PMID: 38656090 PMCID: PMC11368886 DOI: 10.1186/s40643-021-00452-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2021] [Accepted: 09/29/2021] [Indexed: 11/10/2022] Open
Abstract
The fermentation process is dynamically changing, and the metabolic status can be grasped through real-time monitoring of environmental parameters. In this study, a real-time and on-line monitoring experiment platform for substrates and products detection was developed based on non-contact type near-infrared (NIR) spectroscopy technology. The prediction models for monitoring the fermentation process of lactic acid, sophorolipids (SLs) and sodium gluconate (SG) were established based on partial least-squares regression and internal cross-validation methods. Through fermentation verification, the accuracy and precision of the NIR model for the complex fermentation environments, different rheological properties (uniform system and multi-phase inhomogeneous system) and different parameter types (substrate, product and nutrients) have good applicability, and R2 was greater than 0.98, exhibiting a good linear relationship. The root mean square error of prediction shows that the model has high credibility. Through the control of appropriate glucose concentration in SG fermentation as well as glucose and oil concentrations SLs fermentation by NIR model, the titers of SG and SLs were increased to 11.8% and 26.8%, respectively. Although high cost of NIR spectrometer is a key issue for its wide application in an industrial scale. This work provides a basis for the application of NIR spectroscopy in complex fermentation systems.
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Affiliation(s)
- Chen Yang
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 130 Meilong Road, P.O. box 329, Shanghai, 200237, People's Republic of China
| | - Chen Lingli
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 130 Meilong Road, P.O. box 329, Shanghai, 200237, People's Republic of China
| | - Guo Meijin
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 130 Meilong Road, P.O. box 329, Shanghai, 200237, People's Republic of China
| | - Li Xu
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 130 Meilong Road, P.O. box 329, Shanghai, 200237, People's Republic of China.
| | - Liu Jinsong
- SDIC Biotech Investment Co. Ltd, Beijing, 100000, China
| | | | | | - Tian Xiaojun
- SDIC Biotech Investment Co. Ltd, Beijing, 100000, China
| | - Zheng Haoyue
- SDIC Biotech Investment Co. Ltd, Beijing, 100000, China
| | - Tian Xiwei
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 130 Meilong Road, P.O. box 329, Shanghai, 200237, People's Republic of China.
| | - Chu Ju
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 130 Meilong Road, P.O. box 329, Shanghai, 200237, People's Republic of China
| | - Zhuang Yingping
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 130 Meilong Road, P.O. box 329, Shanghai, 200237, People's Republic of China
- Frontiers Science Center for Materiobiology and Dynamic Chemistry, East China University of Science and Technology, Shanghai, 200237, China
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Gouda M, Huang Z, Liu Y, He Y, Li X. Physicochemical impact of bioactive terpenes on the microalgae biomass structural characteristics. BIORESOURCE TECHNOLOGY 2021; 334:125232. [PMID: 33965853 DOI: 10.1016/j.biortech.2021.125232] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2021] [Revised: 04/23/2021] [Accepted: 04/25/2021] [Indexed: 06/12/2023]
Abstract
This study aimed to evaluate the functionality of bioactive terpenes on Spirulina (Arthrospira platensis; AP) and Chlorella (Chlorella vulgaris; CV) biomasses. The two microalgae species were treated with 0.01%, 0.05%, and 0.1% of thymol (THY), trans-cinnamaldehyde (TC), menthol (MEN), and vanillin (VAN). Raman micro-spectroscopy (RMS) was correlated with other physicochemical methods to confirm their functional mechanisms. In results, THY (0.1%) decreased (P < 0.05) RMS intensity at 1196 cm-1 that represents the protein's secondary amines wavenumber. Also, VAN (0.1%) decreased significantly A. platensis α-helix to 16.60 ± 0.52% compared to the control with 19.83 ± 0.32%. While, 0.1% TC increased (P < 0.05) the viscosity to 2.52 ± 0.61 Pa.s. This work demonstrated that terpenes could differently affect the physicochemical structure of microalgae biomass. The RMS's uniqueness comes from its ability to evaluate the functionality of terpenes during microalgae cultivation. Besides, chemometrics led to focus on the most important variances.
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Affiliation(s)
- Mostafa Gouda
- College of Biosystems Engineering and Food Science, Zhejiang University, 866 Yuhangtang Road, Hangzhou 310058, China; Department of Nutrition & Food Science, National Research Centre, Dokki, Giza, Egypt.
| | - Zhenxiong Huang
- College of Biosystems Engineering and Food Science, Zhejiang University, 866 Yuhangtang Road, Hangzhou 310058, China
| | - Yufei Liu
- College of Biosystems Engineering and Food Science, Zhejiang University, 866 Yuhangtang Road, Hangzhou 310058, China
| | - Yong He
- College of Biosystems Engineering and Food Science, Zhejiang University, 866 Yuhangtang Road, Hangzhou 310058, China.
| | - Xiaoli Li
- College of Biosystems Engineering and Food Science, Zhejiang University, 866 Yuhangtang Road, Hangzhou 310058, China.
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Song P, Wang Z, Song P, Yue X, Bai Y, Feng L. Evaluating the effect of aging process on the physicochemical characteristics of rice seeds by low field nuclear magnetic resonance and its imaging technique. J Cereal Sci 2021. [DOI: 10.1016/j.jcs.2021.103190] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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6
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Facchinatto WM, Dos Santos Garcia RH, Dos Santos DM, Fiamingo A, Menezes Flores DW, Campana-Filho SP, de Azevedo ER, Colnago LA. Fast-forward approach of time-domain NMR relaxometry for solid-state chemistry of chitosan. Carbohydr Polym 2021; 256:117576. [PMID: 33483071 DOI: 10.1016/j.carbpol.2020.117576] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2020] [Revised: 12/11/2020] [Accepted: 12/27/2020] [Indexed: 11/19/2022]
Abstract
Chitosans with different average degrees of acetylation and weight molecular weight were analyzed by time-domain NMR relaxometry using the recently proposed pulse sequence named Rhim and Kessemeier - Radiofrequency Optimized Solid-Echo (RK-ROSE) to acquire 1H NMR signal of solid-state materials. The NMR signal decay was composed of faster (tenths of μs) and longer components, where the mobile-part fraction exhibited an effective relaxation transverse time assigned to methyl hydrogens from N-acetyl-d-glucosamine (GlcNAc) units. The higher intrinsic mobility of methyl groups was confirmed via DIPSHIFT experiments by probing the 1H-13C dipolar interaction. RK-ROSE data were modeled by using Partial Least Square (PLS) multivariate regression, which showed a high coefficient of determination (R2 > 0.93) between RK-ROSE signal profile and average degrees of acetylation and crystallinity index, thus indicating that time-domain NMR consists in a promising tool for structural and morphological characterization of chitosan.
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Affiliation(s)
- William Marcondes Facchinatto
- Sao Carlos Institute of Chemistry, University of Sao Paulo, Av. Trabalhador sao-carlense 400, CEP 13566-590, Caixa Postal 780, Sao Carlos, SP, Brazil.
| | - Rodrigo Henrique Dos Santos Garcia
- Sao Carlos Institute of Chemistry, University of Sao Paulo, Av. Trabalhador sao-carlense 400, CEP 13566-590, Caixa Postal 780, Sao Carlos, SP, Brazil
| | - Danilo Martins Dos Santos
- Brazilian Corporation for Agricultural Research, Embrapa Instrumentation, Rua XV de Novembro 1452, CEP 13560-970, Caixa Postal 741, Sao Carlos, SP, Brazil
| | - Anderson Fiamingo
- Sao Carlos Institute of Physics, University of Sao Paulo, Av. Trabalhador sao-carlense 400, CEP 13566-590, Caixa Postal 369, Sao Carlos, SP, Brazil
| | - Douglas William Menezes Flores
- Superior College of Agriculture "Luiz de Queiroz", University of Sao Paulo, Av. Padua Dias 11, CEP 13418-900, Caixa Postal 9, Piracicaba, SP, Brazil
| | - Sérgio Paulo Campana-Filho
- Sao Carlos Institute of Chemistry, University of Sao Paulo, Av. Trabalhador sao-carlense 400, CEP 13566-590, Caixa Postal 780, Sao Carlos, SP, Brazil
| | - Eduardo Ribeiro de Azevedo
- Sao Carlos Institute of Physics, University of Sao Paulo, Av. Trabalhador sao-carlense 400, CEP 13566-590, Caixa Postal 369, Sao Carlos, SP, Brazil
| | - Luiz Alberto Colnago
- Brazilian Corporation for Agricultural Research, Embrapa Instrumentation, Rua XV de Novembro 1452, CEP 13560-970, Caixa Postal 741, Sao Carlos, SP, Brazil
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Bouillaud D, Drouin D, Charrier B, Jacquemmoz C, Farjon J, Giraudeau P, Gonçalves O. Using benchtop NMR spectroscopy as an online non-invasive in vivo lipid sensor for microalgae cultivated in photobioreactors. Process Biochem 2020. [DOI: 10.1016/j.procbio.2020.03.016] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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8
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Babos DV, Garcia RHDS, Colnago LA, Pereira-Filho ER. A simple, rapid, green and non-destructive 19F time-domain NMR method for directly fluorine determination in powder of mineral supplements for cattle. Microchem J 2020. [DOI: 10.1016/j.microc.2019.104416] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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9
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Chen L, Ma R, Zhang Z, McClements DJ, Qiu L, Jin Z, Tian Y. Impact of frying conditions on hierarchical structures and oil absorption of normal maize starch. Food Hydrocoll 2019. [DOI: 10.1016/j.foodhyd.2019.105231] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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10
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Garcia RHS, Filgueiras JG, deAzevedo ER, Colnago LA. Power-optimized, time-reversal pulse sequence for a robust recovery of signals from rigid segments using time domain NMR. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2019; 104:101619. [PMID: 31470338 DOI: 10.1016/j.ssnmr.2019.101619] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2019] [Revised: 08/09/2019] [Accepted: 08/12/2019] [Indexed: 06/10/2023]
Abstract
Time domain NMR (TD-NMR) has been widely used on the analysis of liquids or liquid components in heterogeneous materials such as food, biological tissues, synthetic and bio polymers, oil-bearing rocks, biomasses and cement-based materials. The use of TD-NMR for studying solid and soft mater has been growing in number and variety of applications, mostly for organic systems where the detection of 1H signals is highly advantageous. However, the strong 1H-1H dipolar interactions in solids make the 1H FID to decay in the same order of the dead time of most commercially available NMR probe heads. Thus, solid echoes are often used for recovering signals from solid components. In this article we reinvestigate the time-reversal solid-echo pulse sequence proposed by Rhim and Kessemeier, seeking for optimal pulse power and timing conditions that maximize its efficiency on recovering 1H signals from rigid segments. We show that under these optimized conditions, which we denote as Rhim and Kessemeier - Radiofrequency Optimized Solid-Echo (RK-ROSE), the experiment can be more efficient than its most popular counterparts Solid-Echo (SE) and mixed-Magic Sandwich Echoes (mixed-MSE). Our results also suggest that, despite the finite pulse power, with current probe technology the RK-ROSE experiment is potentially able to provide an accurate estimation of rigid components, without relying on an external calibration using multiple standard samples, as usually done in SFC analysis of the FID signal. At last, we demonstrate that RK-ROSE can be adapted as a simple filter to supress signals from mobile segments in heterogeneous materials.
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Affiliation(s)
- Rodrigo H S Garcia
- Instituto de Química de São Carlos, Universidade de São Paulo, CP 369, 13660-970, São Carlos, SP, Brazil
| | - Jefferson G Filgueiras
- Instituto de Física de São Carlos, Universidade de São Paulo, CP 369, 13660-970, São Carlos, SP, Brazil
| | - Eduardo R deAzevedo
- Instituto de Física de São Carlos, Universidade de São Paulo, CP 369, 13660-970, São Carlos, SP, Brazil.
| | - Luiz Alberto Colnago
- Embrapa Instrumentação, Rua XV de Novembro, 1452, 13560-970, Brazil, São Carlos, SP, Brazil.
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Lu H, Yu X, Li H, Tu ST, Sebastian S. Lipids extraction from wet Chlorella pyrenoidosa sludge using recycled [BMIM]Cl. BIORESOURCE TECHNOLOGY 2019; 291:121819. [PMID: 31369925 DOI: 10.1016/j.biortech.2019.121819] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2019] [Revised: 07/12/2019] [Accepted: 07/15/2019] [Indexed: 06/10/2023]
Abstract
In this study, experiments on pretreating one species of microalgae (Chlorella pyrenoidosa) using one kind of ionic liquid (IL) of [BMIM]Cl were conducted. The aim of this work is to evaluate the recycling efficacy of expensive IL solvent for effective cell disruption. It was indicated that the molecular structure of IL was stable during the recycling test. Five times antisolvent precipitation of microalgae debris after lipid extraction using methanol recovered 99.8% IL with the energy consumption of 4.46 MJ per kg dry Chlorella pyrenoidosa. The chromatography was used to separate IL and hydrolysates, resulting in the IL loss below 1.97 g per kg dry Chlorella pyrenoidosa.
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Affiliation(s)
- Haitao Lu
- Key Laboratory of Safety Science of Pressurized System (MOE), School of Mechanical Engineering, East China University of Science and Technology, Shanghai 200237, China
| | - Xinhai Yu
- Key Laboratory of Safety Science of Pressurized System (MOE), School of Mechanical Engineering, East China University of Science and Technology, Shanghai 200237, China; State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China.
| | - Hailong Li
- School of Business Society and Technology, Mälardalen University, Västerås, Sweden
| | - Shan-Tung Tu
- Key Laboratory of Safety Science of Pressurized System (MOE), School of Mechanical Engineering, East China University of Science and Technology, Shanghai 200237, China
| | - Schwede Sebastian
- School of Business Society and Technology, Mälardalen University, Västerås, Sweden
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12
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Ezeanaka MC, Nsor-Atindana J, Zhang M. Online Low-field Nuclear Magnetic Resonance (LF-NMR) and Magnetic Resonance Imaging (MRI) for Food Quality Optimization in Food Processing. FOOD BIOPROCESS TECH 2019. [DOI: 10.1007/s11947-019-02296-w] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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13
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Bouillaud D, Farjon J, Gonçalves O, Giraudeau P. Benchtop NMR for the monitoring of bioprocesses. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2019; 57:794-804. [PMID: 30586475 DOI: 10.1002/mrc.4821] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2018] [Revised: 12/17/2018] [Accepted: 12/19/2018] [Indexed: 06/09/2023]
Abstract
This mini-review highlights the potential of benchtop nuclear magnetic resonance (NMR) for the monitoring of bioprocesses. It describes recent perspectives opened by the reduced size of devices in relaxometry, magnetic resonance imaging and NMR spectroscopy. In particular, the recent emergence of the benchtop NMR spectroscopy gives access to many applications thanks to the implementation of advanced experiments.
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Affiliation(s)
- Dylan Bouillaud
- Université de Nantes, CEISAM, UMR CNRS 6230, Nantes Cedex 3, France
- Université de Nantes, GEPEA, UMR CNRS 6144, Saint-Nazaire Cedex, France
| | - Jonathan Farjon
- Université de Nantes, CEISAM, UMR CNRS 6230, Nantes Cedex 3, France
| | - Olivier Gonçalves
- Université de Nantes, GEPEA, UMR CNRS 6144, Saint-Nazaire Cedex, France
| | - Patrick Giraudeau
- Université de Nantes, CEISAM, UMR CNRS 6230, Nantes Cedex 3, France
- Institut Universitaire de France, Paris Cedex 05, France
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Liu Y, Bai C, Liu Q, Xu Q, Qian Z, Peng Q, Yu J, Xu M, Zhou X, Zhang Y, Cai M. Engineered ethanol-driven biosynthetic system for improving production of acetyl-CoA derived drugs in Crabtree-negative yeast. Metab Eng 2019; 54:275-284. [PMID: 31077813 DOI: 10.1016/j.ymben.2019.05.001] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2018] [Revised: 04/26/2019] [Accepted: 05/02/2019] [Indexed: 01/17/2023]
Abstract
Many natural drugs use acetyl-CoA as the key biosynthetic precursor. While in eukaryotic chassis host like yeast, efficient biosynthesis of these drugs is often hampered by insufficient acetyl-CoA supply because of its compartmentalized metabolism. Reported acetyl-CoA engineering commonly modifies central carbon metabolism to pull and push acetyl-CoA into cytosol from sugars or redirects biosynthetic pathways in organelles, involving complicated metabolic engineering strategies. We constructed a new biosynthetic system based on a Crabtree-negative yeast, which grew exceptionally on ethanol and assimilated ethanol directly in cytosol to acetyl-CoA (3 steps). A glucose-repressed and ethanol-induced transcriptional signal amplification device (ESAD) with 20-fold signal increase was constructed by rewiring native transcriptional regulation circuits. This made ethanol the sole and fast-growing substrate, acetyl-CoA precursor, and strong biosynthetic pathway inducer simultaneously. The ESAD was used for biosynthesis of a commercial hypolipidemic drug intermediate, monacolin J. A strain producing dihydromonacolin L was firstly constructed and systematically engineered. We further developed a coculture system equipped with this upstream strain and a downstream strain with dihydromonacolin L-to-monacolin J module controlled by a synthetic constitutive transcriptional signal amplification device (CSAD). It produced a high monacolin J titre of 2.2 g/L on ethanol in bioreactor. Engineering glucose-supported and ethanol-repressed fatty acids biosynthesis in the upstream strain contributed more acetyl-CoA for monacolin J and improved its titre to 3.2 g/L, far surpassing other reported productions in yeasts. This study provides a new paradigm for facilitating the high-yield production of acetyl-CoA derived pharmaceuticals and value-added molecules.
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Affiliation(s)
- Yiqi Liu
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, China
| | - Chenxiao Bai
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, China
| | - Qi Liu
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, China
| | - Qin Xu
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, China
| | - Zhilan Qian
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, China
| | - Qiangqiang Peng
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, China
| | - Jiahui Yu
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, China
| | - Mingqiang Xu
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, China
| | - Xiangshan Zhou
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, China
| | - Yuanxing Zhang
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, China; Shanghai Collaborative Innovation Center for Biomanufacturing, 130 Meilong Road, Shanghai 200237, China
| | - Menghao Cai
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, China.
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Rapid identification of edible oil species using supervised support vector machine based on low-field nuclear magnetic resonance relaxation features. Food Chem 2019; 280:139-145. [DOI: 10.1016/j.foodchem.2018.12.031] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2018] [Revised: 11/24/2018] [Accepted: 12/07/2018] [Indexed: 11/21/2022]
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16
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Real-time dynamic analysis with low-field nuclear magnetic resonance of residual oil and sophorolipids concentrations in the fermentation process of Starmerella bombicola. J Microbiol Methods 2019; 157:9-15. [DOI: 10.1016/j.mimet.2018.12.007] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2018] [Revised: 11/26/2018] [Accepted: 12/11/2018] [Indexed: 11/23/2022]
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17
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Chen L, Tian Y, Sun B, Wang J, Tong Q, Jin Z. Rapid, accurate, and simultaneous measurement of water and oil contents in the fried starchy system using low-field NMR. Food Chem 2017; 233:525-529. [DOI: 10.1016/j.foodchem.2017.04.147] [Citation(s) in RCA: 65] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2017] [Revised: 04/23/2017] [Accepted: 04/25/2017] [Indexed: 10/19/2022]
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