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Maharjan R, Fukuda Y, Nakayama T, Nakayama T, Hamada H, Ozaki SI, Inoue T. Structural basis for substrate recognition in the Phytolacca americana glycosyltransferase PaGT3. Acta Crystallogr D Struct Biol 2022; 78:379-389. [PMID: 35234151 PMCID: PMC8900826 DOI: 10.1107/s2059798322000869] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2021] [Accepted: 01/24/2022] [Indexed: 11/30/2022] Open
Abstract
Capsaicinoids are phenolic compounds that have health benefits. However, the pungency and poor water solubility of these compounds limit their exploitation. Glycosylation is a powerful method to improve water solubility and reduce pungency while preserving bioactivity. PaGT3, a uridine diphosphate glycosyltransferase (UGT) from Phytolacca americana, is known for its ability to glycosylate capsaicinoids and other phenolic compounds. While structural information on several UGTs is available, structures of UGTs that can glycosylate a range of phenolic compounds are rare. To fill this gap, crystal structures of PaGT3 with a sugar-donor analogue (UDP-2-fluoroglucose) and the acceptors capsaicin and kaempferol were determined. PaGT3 adopts a GT-B-fold structure that is highly conserved among UGTs. However, the acceptor-binding pocket in PaGT3 is hydrophobic and large, and is surrounded by longer loops. The larger acceptor-binding pocket in PaGT3 allows the enzyme to bind a range of compounds, while the flexibility of the longer loops possibly plays a role in accommodating the acceptors in the binding pocket according to their shape and size. This structural information provides insights into the acceptor-binding mechanism in UGTs that bind multiple substrates.
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Affiliation(s)
- Rakesh Maharjan
- Graduate School of Pharmaceutical Science, Osaka University, Suita, Osaka 565-0871, Japan
| | - Yohta Fukuda
- Graduate School of Pharmaceutical Science, Osaka University, Suita, Osaka 565-0871, Japan
| | - Taisuke Nakayama
- National Institute of Biomedical Innovation, Health and Nutrition, Ibaraki, Osaka 567-0085, Japan
| | - Toru Nakayama
- Department of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, Sendai, Miyagi 980-8579, Japan
| | - Hiroki Hamada
- Department of Life Science, Faculty of Science, Okayama University of Science, Okayama 700-0005, Japan
| | - Shin-ichi Ozaki
- Department of Biological Chemistry, Graduate School of Science and Technology for Innovation, Yamaguchi University, Yamaguchi 753-8515, Japan
| | - Tsuyoshi Inoue
- Graduate School of Pharmaceutical Science, Osaka University, Suita, Osaka 565-0871, Japan
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Maharjan R, Fukuda Y, Shimomura N, Nakayama T, Okimoto Y, Kawakami K, Nakayama T, Hamada H, Inoue T, Ozaki SI. An Ambidextrous Polyphenol Glycosyltransferase PaGT2 from Phytolacca americana. Biochemistry 2020; 59:2551-2561. [PMID: 32525309 DOI: 10.1021/acs.biochem.0c00224] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The glycosylation of small hydrophobic compounds is catalyzed by uridine diphosphate glycosyltransferases (UGTs). Because glycosylation is an invaluable tool for improving the stability and water solubility of hydrophobic compounds, UGTs have attracted attention for their application in the food, cosmetics, and pharmaceutical industries. However, the ability of UGTs to accept and glycosylate a wide range of substrates is not clearly understood due to the existence of a large number of UGTs. PaGT2, a UGT from Phytolacca americana, can regioselectively glycosylate piceatannol but has low activity toward other stilbenoids. To elucidate the substrate specificity and catalytic mechanism, we determined the crystal structures of PaGT2 with and without substrates and performed molecular docking studies. The structures have revealed key residues involved in substrate recognition and suggest the presence of a nonconserved catalytic residue (His81) in addition to the highly conserved catalytic histidine in UGTs (His18). The role of the identified residues in substrate recognition and catalysis is elucidated with the mutational assay. Additionally, the structure-guided mutation of Cys142 to other residues, Ala, Phe, and Gln, allows PaGT2 to glycosylate resveratrol with high regioselectivity, which is negligibly glycosylated by the wild-type enzyme. These results provide a basis for tailoring an efficient glycosyltransferase.
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Affiliation(s)
- Rakesh Maharjan
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University, Suita, Osaka 565-0871, Japan.,Graduate School of Pharmaceutical Science, Osaka University, Suita, Osaka 565-0871, Japan
| | - Yohta Fukuda
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University, Suita, Osaka 565-0871, Japan.,Graduate School of Pharmaceutical Science, Osaka University, Suita, Osaka 565-0871, Japan
| | - Naomichi Shimomura
- Department of Biological Chemistry, Graduate School of Science and Technology for Innovations, Yamaguchi University, Yamaguchi 753-8515, Japan
| | - Taisuke Nakayama
- National Institute of Biomedical Innovation, Health and Nutrition, Saito-Asagi, Ibaraki, Osaka 567-0085, Japan
| | - Yuta Okimoto
- Department of Biological Chemistry, Graduate School of Science and Technology for Innovations, Yamaguchi University, Yamaguchi 753-8515, Japan
| | - Koki Kawakami
- Department of Life Science, Faculty of Science, Okayama University of Science, Okayama 700-0005, Japan
| | - Toru Nakayama
- Department of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, Sendai, Miyagi 980-8579, Japan
| | - Hiroki Hamada
- Department of Life Science, Faculty of Science, Okayama University of Science, Okayama 700-0005, Japan
| | - Tsuyoshi Inoue
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University, Suita, Osaka 565-0871, Japan.,Graduate School of Pharmaceutical Science, Osaka University, Suita, Osaka 565-0871, Japan
| | - Shin-Ichi Ozaki
- Department of Biological Chemistry, Graduate School of Science and Technology for Innovations, Yamaguchi University, Yamaguchi 753-8515, Japan
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Maharjan R, Fukuda Y, Nakayama T, Nakayama T, Hamada H, Ozaki SI, Inoue T. Crown-ether-mediated crystal structures of the glycosyltransferase PaGT3 from Phytolacca americana. Acta Crystallogr D Struct Biol 2020; 76:521-530. [PMID: 32496214 DOI: 10.1107/s2059798320005306] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2020] [Accepted: 04/16/2020] [Indexed: 12/31/2022] Open
Abstract
Uridine diphosphate glycosyltransferases (UGTs) are ubiquitous enzymes that are involved in the glycosylation of small molecules. As glycosylation improves the water solubility and stability of hydrophobic compounds, interest in the use of UGTs for the synthesis of glycosides of poorly soluble compounds is increasing. While sugar-donor recognition in UGTs is conserved with the presence of a plant secondary product glycosyltransferase (PSPG) motif, the basis of the recognition of the sugar acceptor and the regioselectivity of the products is poorly understood owing to low sequence identity around the acceptor-binding region. PaGT3, a glycosyltransferase from the plant Phytolacca americana, can glycosylate a range of acceptors. To illustrate the structure-function relationship of PaGT3, its crystal structure was determined. The sugar-donor and sugar-acceptor binding pockets in PaGT3 were recognized by comparison of its structure with those of other UGTs. The key feature of PaGT3 was the presence of longer loop regions around the hydrophobic acceptor-binding pocket, which resulted in a flexible and wider acceptor binding pocket. In this study, PaGT3 crystals were grown by co-crystallization with 18-crown-6 ether or 15-crown-5 ether. The crown-ether molecule in the asymmetric unit was observed to form a complex with a metal ion, which was coordinated on two sides by the main-chain O atoms of Glu238 from two molecules of the protein. The crown ether-metal complex resembles a molecular glue that sticks two molecules of PaGT3 together to enhance crystal growth. Thus, this result provides an insight into the substrate-recognition strategy in PaGT3 for the study of glycosyltransferases. Additionally, it is shown that crown ether-metal ion complexes can be used as a molecular glue for the crystallization of proteins.
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Affiliation(s)
- Rakesh Maharjan
- Graduate School of Pharmaceutical Science, Osaka University, Suita, Osaka 565-0871, Japan
| | - Yohta Fukuda
- Graduate School of Pharmaceutical Science, Osaka University, Suita, Osaka 565-0871, Japan
| | - Taisuke Nakayama
- National Institute of Biomedical Innovation, Health and Nutrition, Ibaraki, Osaka 567-0085, Japan
| | - Toru Nakayama
- Department of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, Sendai, Miyagi 980-8579, Japan
| | - Hiroki Hamada
- Department of Life Science, Faculty of Science, Okayama University of Science, Okayama 700-0005, Japan
| | - Shin Ichi Ozaki
- Department of Biological Chemistry, Graduate School of Science and Technology for Innovation, Yamaguchi University, Yamaguchi 753-8515, Japan
| | - Tsuyoshi Inoue
- Graduate School of Pharmaceutical Science, Osaka University, Suita, Osaka 565-0871, Japan
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Site-specific α-glycosylation of hydroxyflavones and hydroxyflavanones by amylosucrase from Deinococcus geothermalis. Enzyme Microb Technol 2019; 129:109361. [DOI: 10.1016/j.enzmictec.2019.109361] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2019] [Revised: 06/08/2019] [Accepted: 06/16/2019] [Indexed: 12/27/2022]
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Wang Q, Xu Y, Xu J, Wang X, Shen C, Zhang Y, Liu X, Yu B, Zhang J. Molecular cloning and expression of a glycosyltransferase from Bacillus subtilis for modification of morin and related polyphenols. Biotechnol Lett 2017; 39:1229-1235. [PMID: 28484911 DOI: 10.1007/s10529-017-2352-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2017] [Accepted: 05/04/2017] [Indexed: 01/03/2023]
Abstract
OBJECTIVES To characterize glycosyltransferases from Bacillus subtilis ATCC 6633 and investigate their substrate specificity towards plant polyphenols. RESULTS Among the cloned and expressed six UDP-glycosyltransferases (BsGT1-6), BsGT-1 showed activity with a wide range of polyphenols: morin, quercetin, alizarin, rehin, curcumin and aloe emodin. The gene of BsGT-1 has an ORF of 1206 bp encoding 402 amino acids. The recombinant enzyme was purified to homogeneity by Ni-NTA affinity chromatograph, and its biochemical characteristics were identified by HPLC-UV/MS, 1H-NMR and 13C-NMR. BsGT-1 has an MW of approx. 46 kDa as indicated by SDS-PAGE; its activity was optimal at 40 °C and pH 8.5. The Km value of BsGT-1 towards morin was 110 μM. CONCLUSIONS BsGT-1 from B. subtilis was cloned. It had high catalytic capabilities towards polyphenols which would make it feasible for the structural modification of polyphenols.
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Affiliation(s)
- Qianqian Wang
- State Key Laboratory of Natural Medicines, China Pharmaceutical University, 24# TongJia Xiang Street, Nanjing, 210009, Jiangsu, China.,Jiangsu Key Laboratory of TCM Evaluation and Translational Research, China Pharmaceutical University, Nanjing, 211198, Jiangsu, China
| | - Yixiang Xu
- Institute of Biotechnology for TCM Research, School of Traditional Chinese Medicine, China Pharmaceutical University, Nanjing, 210009, Jiangsu, China
| | - Jiaqi Xu
- Jiangsu Key Laboratory of TCM Evaluation and Translational Research, China Pharmaceutical University, Nanjing, 211198, Jiangsu, China
| | - Xudong Wang
- Institute of Biotechnology for TCM Research, School of Traditional Chinese Medicine, China Pharmaceutical University, Nanjing, 210009, Jiangsu, China
| | - Chen Shen
- Institute of Biotechnology for TCM Research, School of Traditional Chinese Medicine, China Pharmaceutical University, Nanjing, 210009, Jiangsu, China
| | - Yan Zhang
- Institute of Biotechnology for TCM Research, School of Traditional Chinese Medicine, China Pharmaceutical University, Nanjing, 210009, Jiangsu, China
| | - Xiufeng Liu
- Institute of Biotechnology for TCM Research, School of Traditional Chinese Medicine, China Pharmaceutical University, Nanjing, 210009, Jiangsu, China
| | - Boyang Yu
- Jiangsu Key Laboratory of TCM Evaluation and Translational Research, China Pharmaceutical University, Nanjing, 211198, Jiangsu, China
| | - Jian Zhang
- State Key Laboratory of Natural Medicines, China Pharmaceutical University, 24# TongJia Xiang Street, Nanjing, 210009, Jiangsu, China. .,Institute of Biotechnology for TCM Research, School of Traditional Chinese Medicine, China Pharmaceutical University, Nanjing, 210009, Jiangsu, China.
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Uesugi D, Hamada H, Shimoda K, Kubota N, Ozaki SI, Nagatani N. Synthesis, oxygen radical absorbance capacity, and tyrosinase inhibitory activity of glycosides of resveratrol, pterostilbene, and pinostilbene. Biosci Biotechnol Biochem 2016; 81:226-230. [PMID: 27756183 DOI: 10.1080/09168451.2016.1240606] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
The stilbene compound resveratrol was glycosylated to give its 4'-O-β-D-glucoside as the major product in addition to its 3-O-β-D-glucoside by a plant glucosyltransferase from Phytolacca americana expressed in recombinant Escherichia coli. This enzyme transformed pterostilbene to its 4'-O-β-D-glucoside, and converted pinostilbene to its 4'-O-β-D-glucoside as a major product and its 3-O-β-D-glucoside as a minor product. An analysis of antioxidant capacity showed that the above stilbene glycosides had lower oxygen radical absorbance capacity (ORAC) values than those of the corresponding stilbene aglycones. The 3-O-β-D-glucoside of resveratrol showed the highest ORAC value among the stilbene glycosides tested, and pinostilbene had the highest value among the stilbene compounds. The tyrosinase inhibitory activities of the stilbene aglycones were improved by glycosylation; the stilbene glycosides had higher activities than the stilbene aglycones. Resveratrol 3-O-β-D-glucoside had the highest tyrosinase inhibitory activity among the stilbene compounds tested.
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Affiliation(s)
- Daisuke Uesugi
- a Faculty of Science, Department of Life Science , Okayama University of Science , Okayama , Japan
| | - Hiroki Hamada
- a Faculty of Science, Department of Life Science , Okayama University of Science , Okayama , Japan
| | - Kei Shimoda
- b Faculty of Medicine, Department of Biomedical Chemistry , Oita University , Oita , Japan
| | - Naoji Kubota
- b Faculty of Medicine, Department of Biomedical Chemistry , Oita University , Oita , Japan
| | - Shin-Ichi Ozaki
- c Faculty of Agriculture, Department of Biological Sciences , Yamaguchi University , Yamaguchi , Japan
| | - Naoki Nagatani
- d Department of Applied Chemistry , Graduate School of Engineering, Okayama University of Science , Okayama , Japan
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Recent developments in the enzymatic O-glycosylation of flavonoids. Appl Microbiol Biotechnol 2016; 100:4269-81. [PMID: 27029191 DOI: 10.1007/s00253-016-7465-0] [Citation(s) in RCA: 72] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2016] [Revised: 03/09/2016] [Accepted: 03/12/2016] [Indexed: 01/04/2023]
Abstract
The glycosylation of bioactive compounds, such as flavonoids, is of particular relevance, as it modulates many of their pharmacokinetic parameters. This article reviews the literature between 2010 and the end of 2015 that deals with the enzymatic O-glycosylation of this class of compounds. Enzymes of glycosyltransferase family 1 remain the biocatalysts of choice for glycodiversification of flavonoids, in spite of relatively low yields. Transfers of 14 different sugars, in addition to glucose, were reported. Several Escherichia coli strains were metabolically engineered to enable a (more efficient) synthesis of the required donor during in vivo glycosylations. For the transfer of glucose, enzymes of glycoside hydrolase families 13 and 70 were successfully assayed with several flavonoids. The number of acceptor substrates and of regiospecificities characterized so far is smaller than for glycosyltransferases. However, their glycosyl donors are much cheaper and yields are considerably higher. A few success stories of enzyme engineering were reported. These improved the catalytic efficiency as well as donor, acceptor, or product ranges. Currently, the development of appropriate high-throughput screening systems appears to be the major bottleneck for this powerful technology.
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Yasukawa R, Moriwaki N, Uesugi D, Kaneko F, Hamada H, Ozaki SI. Enzymatic Synthesis of Quercetin Monoglucopyranoside and Maltooligosaccharides. Nat Prod Commun 2015. [DOI: 10.1177/1934578x1501000639] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
Quercetin 3- O-β-monoglucopyranoside and quercetin 3- O-β-maltooligosaccharide were synthesized from quercetin using glucosyltransferase-3 from Phytolacca americana and cyclodextrin glucanotransferase.
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Affiliation(s)
- Ryo Yasukawa
- Department of Biological Sciences, Faculty of Agriculture, Yamaguchi University, 1677–1 Yoshida, Yamaguchi 753–8515, Japan
| | - Natsumi Moriwaki
- Department of Biological Sciences, Faculty of Agriculture, Yamaguchi University, 1677–1 Yoshida, Yamaguchi 753–8515, Japan
| | - Daisuke Uesugi
- Department of Life Sciences, Faculty of Science, Okayama University of Sciences, 1–1 Ridai-cho, Kita-ku, Okayama 700-0005, Japan
| | - Fuya Kaneko
- Department of Life Sciences, Faculty of Science, Okayama University of Sciences, 1–1 Ridai-cho, Kita-ku, Okayama 700-0005, Japan
| | - Hiroki Hamada
- Department of Life Sciences, Faculty of Science, Okayama University of Sciences, 1–1 Ridai-cho, Kita-ku, Okayama 700-0005, Japan
| | - Shin-Ichi Ozaki
- Department of Biological Sciences, Faculty of Agriculture, Yamaguchi University, 1677–1 Yoshida, Yamaguchi 753–8515, Japan
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