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Wu X, Wang C, Hao P, He F, Yao Z, Wei R, Zhang X. Mesoscopic Model for Reversible Adsorption Stage of Albumin and Fibrinogen on TiO 2 Surface. J Phys Chem B 2024; 128:1900-1914. [PMID: 38289261 DOI: 10.1021/acs.jpcb.3c07372] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/01/2024]
Abstract
The competitive behavior of proteins in the reversible adsorption stage plays a crucial role in determining the composition of the protein layer and the subsequent biological responses to the biomaterial. However, such competitive adsorption is a mesoscopic process at physiological protein concentration, and neither a macroscopic experiment nor microscopic MD (molecular dynamics) simulation is suitable to clarify it. Here, we proposed a mesoscopic DPD (dissipative particle dynamics) model to illustrate the competitive process of albumin and fibrinogen on TiO2 surface with its parameters deduced from our previous MD simulation, and proved the model well retained the diffusion and adsorption properties of proteins in the competitive adsorption on the plane surface. We then applied the model to the competitive adsorption on the surfaces with different nanostructures and observed that when the nanostructure size is much larger than that of protein, the increase in surface area is the main influencing factor; when the nanostructure size is close to that of protein, the coordination between the nanostructure and the size and shape of protein significantly affects the competitive adsorption process. The model has revealed many mechanical phenomena observed in previous experimental studies and has the potential to contribute to the development of high-performance biomaterials.
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Affiliation(s)
- Xiao Wu
- Engineering Technology Research Center of Henan Province for MEMS Manufacturing and Applications, School of Mechanics and Safety Engineering, Zhengzhou University, Zhengzhou, Henan 450001, China
- Applied Mechanics Laboratory, Department of Engineering Mechanics, Tsinghua University, Beijing 100084, China
| | - Chenyang Wang
- Applied Mechanics Laboratory, Department of Engineering Mechanics, Tsinghua University, Beijing 100084, China
| | - Pengfei Hao
- Applied Mechanics Laboratory, Department of Engineering Mechanics, Tsinghua University, Beijing 100084, China
- AVIC Aerodynamics Research Institute Joint Research Center for Advanced Materials and Anti-Icing School of Materials Science and Engineering, Tsinghua University, Beijing 100084, China
| | - Feng He
- Applied Mechanics Laboratory, Department of Engineering Mechanics, Tsinghua University, Beijing 100084, China
| | - Zhaohui Yao
- University of Chinese Academy of Sciences, Beijing 101408, P. C. China
| | - Ronghan Wei
- Engineering Technology Research Center of Henan Province for MEMS Manufacturing and Applications, School of Mechanics and Safety Engineering, Zhengzhou University, Zhengzhou, Henan 450001, China
| | - Xiwen Zhang
- Applied Mechanics Laboratory, Department of Engineering Mechanics, Tsinghua University, Beijing 100084, China
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Fatemi SM, Fatemi SJ. A comparative study of the wetting behaviors on a rutile TiO2 having different surface morphologies. J Mol Graph Model 2022; 112:108123. [DOI: 10.1016/j.jmgm.2022.108123] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2021] [Revised: 12/18/2021] [Accepted: 01/10/2022] [Indexed: 10/19/2022]
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Wu X, Wang C, Hao P, He F, Yao Z, Zhang X. Adsorption properties of albumin and fibrinogen on hydrophilic/hydrophobic TiO 2 surfaces: A molecular dynamics study. Colloids Surf B Biointerfaces 2021; 207:111994. [PMID: 34303996 DOI: 10.1016/j.colsurfb.2021.111994] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2021] [Revised: 07/06/2021] [Accepted: 07/16/2021] [Indexed: 01/23/2023]
Abstract
In serval experimental researches, UV-induced hydrophilicity enabled better hemocompatibility in the TiO2 surface, which was considered to be caused by the removal of the carboxylic acid contamination from the surface. In this paper, we altered the surface wetting property by applying the formate contamination on the rutile (110) surface, and systematically investigated the adsorption properties of albumin and fibrinogen on hydrophilic/hydrophobic TiO2 surface. Unique contacts were found between the charged residues and the hydrophilic surface, anchoring the protein on the surface. The small size and the heart shape of albumin make it easy to cross the stable water layers near the surface. Besides, albumin has a higher proportion of charged residues, so it can form more unique contacts on the hydrophilic surface. Therefore, the albumin tends to adsorb on the hydrophilic surface. For the hydrophobic surface, the water layers near the surface are weakened, which helps the fibrinogen diffusing to the surface and adjusting its orientation. Although the hydrophobic surface cannot form the unique contacts, the larger size of fibrinogen can provide more residues to form enough ordinary contacts after adjusting, and then achieves stable adsorption. Therefore, fibrinogen tends to adsorb on the hydrophobic surface.
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Affiliation(s)
- Xiao Wu
- Department of Engineering Mechanics, Tsinghua University, Beijing, 100084, China
| | - Chenyang Wang
- Department of Engineering Mechanics, Tsinghua University, Beijing, 100084, China
| | - Pengfei Hao
- Department of Engineering Mechanics, Tsinghua University, Beijing, 100084, China
| | - Feng He
- Department of Engineering Mechanics, Tsinghua University, Beijing, 100084, China
| | - Zhaohui Yao
- University of Chinese Academy of Sciences, Beijing, 101408, China
| | - Xiwen Zhang
- Department of Engineering Mechanics, Tsinghua University, Beijing, 100084, China.
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Gas separation using graphene nanosheet: insights from theory and simulation. J Mol Model 2020; 26:322. [PMID: 33118096 DOI: 10.1007/s00894-020-04581-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Accepted: 10/19/2020] [Indexed: 10/23/2022]
Abstract
The investigation of porous graphene, especially experimental research, is a challenging issue in related academic and technology and has become a hot topic in recent years. It is well known that the preparation of porous graphene is a difficult problem in experimental techniques. To prepare nanoporous graphene, much attention must focus on the quality of nanoporous structures and throughput array pores. Therefore, a comprehensive summary as much as possible has been made to provide a better understanding of the progress. A summary of synthesis techniques, the properties of nanoporous graphene membranes from the synthesis point of view, and potential applications of porous graphene and graphene oxide for gas separation on the basis of theoretical studies were given attention in this paper. Gas separation, including carbon dioxide capture, gas storage, natural gas sweetening, and flue gas purification through porous graphene, is of great interest. Porous graphene with narrow pore distribution provides exciting opportunities in gas separation processes.
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Jin H, Kumi A, Zhang Y. Interaction between N-Methylmorpholine N-Oxide, Water, and the Titanium Dioxide Surface in the Lyocell Process. J Phys Chem A 2020; 124:8653-8659. [PMID: 33048548 DOI: 10.1021/acs.jpca.0c06119] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Interaction between N-methylmorpholine N-oxide (NMMO), H2O, and the titanium dioxide (TiO2) surface was studied by spectral tests and molecular dynamics simulations as the theoretical foundation for the development of functional lyocell. The molecular structure, movement, and arrangement of the NMMO and water molecules, as well as the interaction energies between them, were characterized. The results show that both water and NMMO molecules can interact with the TiO2 surface, and the water molecule is stronger, which makes the water molecules near the TiO2 surface different from that of the bulk solution. With the increase of the NMMO concentration, NMMO molecules compete with the water molecules adsorbed on the TiO2 surface, and two adsorption conformations of NMMO on the TiO2 surface were found. When the NMMO concentration is higher than 50%, the N-O bond of NMMO is the main position interacting with the TiO2 surface, forming a more stable and complex adsorption molecular layer and enhancing the interaction between TiO2 and the solution, and finally promote the dispersion of TiO2 particle and increase the zero-shear viscosity of the lyocell solution. At the same time, the strong interaction also weakens the N-O bond of the NMMO molecules near the TiO2 surface with the bond length increasing; however, the influence cannot cause instability of NMMO. UV spectra also shows that there is no NMMO decomposition due to the addition of TiO2 during the dissolution process. In conclusion, NMMO can promote the dispersion of the TiO2 nanoparticles in the solvent, and the stability of NMMO is not affected, which is the basis for the preparation of the functional lyocell fiber.
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Affiliation(s)
- Hong Jin
- State Key Laboratory for Modification of Chemical Fibers and Polymer Materials, College of Materials Science and Engineering, Donghua University, Shanghai, P. R. China, 201620
| | - Alex Kumi
- State Key Laboratory for Modification of Chemical Fibers and Polymer Materials, College of Materials Science and Engineering, Donghua University, Shanghai, P. R. China, 201620
| | - Yumei Zhang
- State Key Laboratory for Modification of Chemical Fibers and Polymer Materials, College of Materials Science and Engineering, Donghua University, Shanghai, P. R. China, 201620
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Margineda J, English NJ. Dynamical and structural properties of adsorbed water molecules at the TiO2 anatase-(1 0 1) surface: Importance of interfacial hydrogen-bond rearrangements. Chem Phys Lett 2020. [DOI: 10.1016/j.cplett.2020.137164] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Margineda J, English NJ. Dynamical and structural properties of adsorbed water molecules at the TiO2 rutile-(110) surface: interfacial hydrogen bonding probed by ab-initio molecular dynamics. Mol Phys 2020. [DOI: 10.1080/00268976.2020.1725166] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
- Joan Margineda
- School of Chemical and Bioprocess Engineering, University College Dublin, Dublin 4, Ireland
| | - Niall J. English
- School of Chemical and Bioprocess Engineering, University College Dublin, Dublin 4, Ireland
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Fatemi SM, Fatemi SJ, Abbasi Z. PAMAM dendrimer-based macromolecules and their potential applications: recent advances in theoretical studies. Polym Bull (Berl) 2020. [DOI: 10.1007/s00289-019-03076-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
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Comparative study of the structure and dynamics of water confined between nickel nanosheets and bulk water, a study using reactive force fields. J Mol Liq 2020. [DOI: 10.1016/j.molliq.2019.112030] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Foroutan M, Fatemi SM, Darvishi M. Formation and stability of water clusters at the molybdenum disulfide interface: a molecular dynamics simulation investigation. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2018; 30:415001. [PMID: 30187890 DOI: 10.1088/1361-648x/aadf51] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
In this work structural properties and dynamic behavior of a water nano droplet on the molybdenum disulfide were considered. The simulation results show that water molecules form polygon clusters on the interface, and most of which are hexagonal. Structures of water clusters at the interface are seen in two forms of curved and flattened polygons, which result in the formation of hydrogen bonds between and in the adjacent layers, respectively. Most of the clusters have circular flattened structures. Calculations of the lifetime of hydrogen bonds of water molecules at the interface also show that hydrogen bonds between water molecules at the interface have a low stability. This leads to the permanent formation and breaking down of hydrogen bonds of water molecules which can cause movement of water molecules and, consequently, the displacement of the center of mass and droplet motion. Considering the changes in the center of mass of a water droplet at the MoS2 interface display, the water droplet has a significant spontaneous motion.
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Affiliation(s)
- Masumeh Foroutan
- Department of Physical Chemistry, School of Chemistry, College of Science, University of Tehran, Tehran, Iran
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