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Awere CO, Sneha A, Rakkammal K, Muthui MM, Kumari R A, Govindan S, Batur Çolak A, Bayrak M, Muthuramalingam P, Anadebe VC, Archana P, Sekar C, Ramesh M. Carbon dot unravels accumulation of triterpenoid in Evolvulus alsinoides hairy roots culture by stimulating growth, redox reactions and ANN machine learning model prediction of metabolic stress response. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 216:109142. [PMID: 39357200 DOI: 10.1016/j.plaphy.2024.109142] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2024] [Revised: 09/19/2024] [Accepted: 09/20/2024] [Indexed: 10/04/2024]
Abstract
Evolvulus alsinoides, a therapeutically valuable shrub can provide consistent supply of secondary metabolites (SM) with pharmaceutical significance. Nonetheless, because of its short life cycle, fresh plant material for research and medicinal diagnostics is severely scarce throughout the year. The effects of exogenous carbon quantum dot (CD) application on metabolic profiles, machine learning (ML) prediction of metabolic stress response, and SM yields in hairy root cultures of E. alsinoides were investigated and quantified. The range of the particle size distribution of the CDs was between 3 and 7 nm. The CDs EPR signal and spin trapping experiments demonstrated the formation of O2-•spin-adducts at (g = 2.0023). Carbon dot treatment increased the levels of hydrogen peroxide and malondialdehyde concentrations as well as increased antioxidant enzyme activity. CD treatments (6 μg mL-1) significantly enhanced the accumulation of squalene and stigmasterol (7 and 5-fold respectively). The multilayer perceptron (MLP) algorithm demonstrated remarkable prediction accuracy (MSE value = 1.99E-03 and R2 = 0.99939) in both the training and testing sets for modelling. Based on the prediction, the maximum oxidative stress index and enzymatic activities were highest in the medium supplemented with 10 μg mL-1 CDs. The outcome of this study indicated that, for the first time, using CD could serve as a novel elicitor for the production of valuable SM. MLP may also be used as a forward-thinking tool to optimize and predict SM with high pharmaceutical significance. This study would be a touchstone for understanding the use of ML and luminescent nanomaterials in the production and commercialization of important SM.
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Affiliation(s)
- Collince Omondi Awere
- Department of Biotechnology, Science Campus, Alagappa University, Karaikudi, 630003, India
| | - Anbalagan Sneha
- Department of Biotechnology, Science Campus, Alagappa University, Karaikudi, 630003, India
| | - Kasinathan Rakkammal
- Department of Biotechnology, Science Campus, Alagappa University, Karaikudi, 630003, India
| | - Martin Mwaura Muthui
- Department of Pure and Applied Sciences, Technical University of Mombasa, Mombasa, Kenya
| | - Anitha Kumari R
- N Rama Varier Ayurveda Foundation, AVN Ayurveda Formulation Private Limited, Madurai, India
| | - Suresh Govindan
- N Rama Varier Ayurveda Foundation, AVN Ayurveda Formulation Private Limited, Madurai, India
| | - Andaç Batur Çolak
- Information Technologies Application and Research Center, Istanbul Ticaret University, İstanbul 34445, Turkiye
| | - Mustafa Bayrak
- Mechanical Engineering Department, Niğde Ömer Halisdemir University, Niğde 51240, Turkiye
| | - Pandiyan Muthuramalingam
- Division of Horticultural Science, College of Agriculture and Life Sciences, Gyeongsang National University, Jinju, 52725, South Korea
| | - Valentine Chikaodili Anadebe
- Department of Chemical Engineering, Alex Ekwueme Federal University Ndufu Alike PMB 1010 Abakailiki, Ebonyi State, Nigeria
| | - Pandi Archana
- Department of Bioelectronics and Biosensors, Alagappa University, Karaikudi, 630003, India
| | - Chinnathambi Sekar
- Department of Bioelectronics and Biosensors, Alagappa University, Karaikudi, 630003, India
| | - Manikandan Ramesh
- Department of Biotechnology, Science Campus, Alagappa University, Karaikudi, 630003, India.
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PPDN and NTCDA radical anions formation in EMIM-DCA, BMIM-BF4 EMIM+-AC ionic liquid solutions under the steady state UV and VIS light illumination: A Combined X-, K-band EPR and DFT study. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.119631] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Slade J, Merunka D, Peric M. Radical Diffusion Crossover Phenomenon in Glass-Forming Liquids. J Phys Chem Lett 2022; 13:3510-3515. [PMID: 35417657 DOI: 10.1021/acs.jpclett.2c00305] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
We studied the diffusivities of a nitroxide radical at various temperatures in six glass-forming molecular liquids by electron spin resonance. By comparing the radical diffusivities and solvent self-diffusivities, we found that the radical diffusivities are lower than the self-diffusivities at high temperatures and approach them at low temperatures in all liquids. This crossover behavior was considered as evidence that a single-molecule diffusion process transforms into a collective process with temperature lowering. The crossover phenomenon was analyzed by a novel, simple diffusion model, combining collective and single-molecule diffusion processes, and it was compared to the Arrhenius crossover phenomenon. The obtained results suggest that future studies of tracer diffusion could contribute to a better understanding of diffusion mechanisms in glass-forming liquids. The proposed diffusion model could be used to study the crossover phenomena of tracer diffusion measured by other techniques, and it could serve as a base for developing more advanced models.
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Affiliation(s)
- Jakov Slade
- Division of Physical Chemistry, Ruđer Bošković Institute, Bijenička cesta 54, HR-10000 Zagreb, Croatia
| | - Dalibor Merunka
- Division of Physical Chemistry, Ruđer Bošković Institute, Bijenička cesta 54, HR-10000 Zagreb, Croatia
| | - Miroslav Peric
- Department of Physics and Astronomy, California State University, Northridge, Northridge, California 91330, United States
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Slade J, Merunka D, Huerta E, Peric M. Rotation of a Charged Spin Probe in Room-Temperature Ionic Liquids. J Phys Chem B 2021; 125:7435-7446. [PMID: 34197101 DOI: 10.1021/acs.jpcb.1c02471] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
X-band electron paramagnetic resonance spectroscopy has been used to investigate the rotational diffusion of a stable, positively charged nitroxide 4-trimethylammonium-2,2,6,6-tetramethylpiperidine-1-oxyl iodide (Cat-1) in a series of 1-alkyl-3-methylimidazolium tetrafluoroborate room-temperature ionic liquids (RTILs) having alkyl chain lengths from two to eight carbons. The rotation of Cat-1 is anisotropic with the preferential axis of rotation along the NO• moiety. The Stokes-Einstein-Debye law describes the mean rotational correlation time of Cat-1, assuming that the hydrodynamic radius is smaller than the van der Waals radius of the probe. This implies that the probe rotates freely, experiencing slip boundary condition, which is solvent-dependent. The rotational correlation time of Cat-1 in RTILs can very well be fitted to a power-law functionality with a singular temperature, which suggests that the apparent activation energy of rotation exhibits non-Arrhenius behavior. Compared to the rotation of perdeuterated 2,2,6,6-tetramethyl-4-oxopiperidine-1-oxyl (pDTO), which is neutral, the rotation of Cat-1 is several times slower. The rotational anisotropy, the ratio of the rotational times of pDTO and Cat-1, and the apparent activation energy indicate the transition from a homogeneously globular structure to a spongelike structure when the alkyl chain has four carbons, which is also observed in molecular dynamics computational studies. For the first time, we have been able to show that the rotational correlation time of a solute molecule can be analyzed in terms of the Cohen-Turnbull free volume theory. The Cohen-Turnbull theory fully describes the rotation of Cat-1 in all ionic liquids in the measured temperature range.
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Affiliation(s)
- Jakov Slade
- Division of Physical Chemistry, Rud̵er Bošković Institute, Bijenička cesta 54, Zagreb HR-10000, Croatia
| | - Dalibor Merunka
- Division of Physical Chemistry, Rud̵er Bošković Institute, Bijenička cesta 54, Zagreb HR-10000, Croatia
| | - Ezequiel Huerta
- Department of Physics and Astronomy and The Center for Biological Physics, California State University, Northridge, Northridge, California 91330, United States
| | - Miroslav Peric
- Department of Physics and Astronomy and The Center for Biological Physics, California State University, Northridge, Northridge, California 91330, United States
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Gizatullin B, Mattea C, Stapf S. Molecular Dynamics in Ionic Liquid/Radical Systems. J Phys Chem B 2021; 125:4850-4862. [PMID: 33930266 DOI: 10.1021/acs.jpcb.1c02118] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Molecular dynamics of the ionic liquid 1-ethyl-3-methylimidazolium bis(trifluoromethyl sulfonyl)imide (Emim-Tf2N) with either of the four organic stable radicals, TEMPO, 4-benzoyloxy-TEMPO, BDPA, and DPPH, is studied by using Nuclear Magnetic Resonance (NMR) and Dynamic Nuclear Polarization (DNP). In complex fluids at ambient temperature, NMR signal enhancement by DNP is frequently obtained by a combination of several mechanisms, where the Overhauser effect and solid effect are the most common. Understanding the interactions of free radicals with ionic liquid molecules is of particular significance due to their complex dynamics in these systems, influencing the properties of the ion-radical interaction. A combined analysis of EPR, DNP, and NMR relaxation dispersion is carried out for cations and anions containing, respectively, the NMR active nuclei 1H or 19F. Depending on the size and the chemical properties of the radical, different interaction processes are distinguished, namely, the Overhauser effect and solid effect, driven by dominating dipolar or scalar interactions. The resulting NMR relaxation dispersion is decomposed into rotational and translational contributions, allowing the identification of the corresponding correlation times of motion and interactions. The influence of electron relaxation time and electron-nuclear spin hyperfine coupling is discussed.
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Affiliation(s)
- Bulat Gizatullin
- FG Technische Physik II/Polymerphysik, Technische Universität Ilmenau, D-98684 Ilmenau, Germany
| | - Carlos Mattea
- FG Technische Physik II/Polymerphysik, Technische Universität Ilmenau, D-98684 Ilmenau, Germany
| | - Siegfried Stapf
- FG Technische Physik II/Polymerphysik, Technische Universität Ilmenau, D-98684 Ilmenau, Germany
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Merunka D, Peric M. An analysis of radical diffusion in ionic liquids in terms of free volume theory. J Chem Phys 2020; 152:024502. [DOI: 10.1063/1.5138130] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023] Open
Affiliation(s)
- Dalibor Merunka
- Division of Physical Chemistry, Rudđer Bošković Institute, Bijenička cesta 54, HR-10000 Zagreb, Croatia
| | - Miroslav Peric
- Department of Physics and Astronomy, The Center for Biological Physics, California State University at Northridge, Northridge, California 91330, USA
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