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Sarath Kumar CB, Reji RP, Sivalingam Y, Kawazoe Y, Surya VJ. Carbon and boron nitride quantum dots as optical sensor probes for selective detection of toxic metals in drinking water: a quantum chemical prediction through structure- and morphology-dependent electronic and optical properties. RSC Adv 2024; 14:28182-28200. [PMID: 39234523 PMCID: PMC11372860 DOI: 10.1039/d4ra04843a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2024] [Accepted: 08/12/2024] [Indexed: 09/06/2024] Open
Abstract
Toxic metals present in drinking water pose a serious threat to the environment and human beings when present in abundance. In this work, we investigated the sensing ability of quantum dots (pristine CQDs, boron/nitrogen/sulphur (B/N/S)-doped CQDs, and BNQDs) of various sizes and morphologies (rectangular, circular, and triangular) towards toxic metals such as arsenic (As), cobalt (Co), nickel (Ni), copper (Cu), and lead (Pb) using quantum chemical density functional theory calculations in both gas and water phases. We probed the structural, electronic, and optical properties of the QDs. All the modelled QDs are energetically stable. Frontier molecular orbital analysis predicted that BNQDs are more chemically stable than all other CQDs. UV-vis absorption and Raman spectra analyses helped to understand the optical properties of all the QDs. Further, adsorption studies revealed that triangular pristine CQDs and sulphur-doped CQDs show higher adsorption affinity towards the toxic metals. The magnitude of adsorption energies follows the trend Ni > Pb > As > Cu > Co in most of the QDs. Several pristine and doped CQDs exhibited chemisorption towards the toxic metals, and hence, they can be used as adsorbents. However, a majority of BNQDs showed physisorption towards the metals, and therefore, they can be used as efficient optical sensors compared to CQDs. Further, the sensing ability of the QDs was explored through optical phenomena such as changes in UV-vis absorption spectra and fluorescence after metal adsorption. When compared to pristine CQDs and B/N/S-doped CQDs, metal complexation caused significant changes in the UV-vis absorbance peak intensities in BNQDs along with peak shifts. Moreover, metal interaction with the QDs increased their fluorescence lifetime with the highest values observed in Co-adsorbed triangular H18C46 (152.30 ns), Pb-adsorbed rectangular H15C30S (21.29 ns), and As-adsorbed circular B27N27H18 (2.99 μs) among pristine CQDs, B/N/S-doped CQDs, and BNQDs, respectively. Overall, we believe that our first-of-its-kind computational prediction of the optical sensing ability of tailor-made zero-dimensional systems such as QDs will be a great aid for experimentalists in designing novel and rapid optical probes to detect toxic metals in drinking water.
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Affiliation(s)
- Chedharla Balaji Sarath Kumar
- Novel, Advanced, and Applied Materials (NAAM) Laboratory, Department of Physics and Nanotechnology, SRM Institute of Science and Technology Kattankulathur 603203 Tamil Nadu India
| | - Rence Painappallil Reji
- Novel, Advanced, and Applied Materials (NAAM) Laboratory, Department of Physics and Nanotechnology, SRM Institute of Science and Technology Kattankulathur 603203 Tamil Nadu India
| | - Yuvaraj Sivalingam
- Laboratory of Sensors, Energy and Electronic Devices (Lab SEED), Department of Physics and Nanotechnology, SRM Institute of Science and Technology Kattankulathur 603203 Tamil Nadu India
- Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), King Abdullah University of Science and Technology (KAUST) Thuwal 23955-6900 Kingdom of Saudi Arabia
| | - Yoshiyuki Kawazoe
- New Industry Creation Hatchery Center, Tohoku University Aoba-ku, Miyagi Sendai 980-8579 Japan
- Department of Physics and Nanotechnology, SRM Institute of Science and Technology Kattankulathur 603203 Tamil Nadu India
| | - Velappa Jayaraman Surya
- Novel, Advanced, and Applied Materials (NAAM) Laboratory, Department of Physics and Nanotechnology, SRM Institute of Science and Technology Kattankulathur 603203 Tamil Nadu India
- New Industry Creation Hatchery Center, Tohoku University Aoba-ku, Miyagi Sendai 980-8579 Japan
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Shakourian-Fard M, Ghenaatian HR, Kamath G. Geminal Dicationic Ionic Liquids (GDILs) and Their Adsorption on Graphene Nanoflakes. ACS OMEGA 2024; 9:7575-7587. [PMID: 38405523 PMCID: PMC10882669 DOI: 10.1021/acsomega.3c06581] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/01/2023] [Revised: 01/10/2024] [Accepted: 01/23/2024] [Indexed: 02/27/2024]
Abstract
In this work, the configuration and stability of 15 geminal dicationic ionic liquids (GDILs) and their adsorption mechanism on the graphene nanoflake (GNF) are investigated using the density functional theory (DFT) method. We find that the interactions of dications ([DAm]+, [DIm]+, [DImDm]+, [DPy]+, and [DPyrr]+)) are stabilized near the anions ([BF4]-, [PF6]-, and [Tf2N]-) in the most stable configurations of GDILs through electrostatic interactions, van der Waals (vdW) interactions, and hydrogen bonding (H-bonding). Our calculations show that the adsorption of the GDILs on the GNF is consistent with the charge transfer and occurs via X···π (X = N, O, F), C-H···π, and π···π noncovalent interactions, leading to a decrease in the strength of the intermolecular interactions between the dications and anions in the GDILs. The thermochemistry calculations reveal that the formation of GDIL@GNF complexes is an exothermic and favorable reaction. The adsorption energy (Eads) calculations show that the highest Eads values for the interaction of GDILs containing [BF4]-, [PF6]-, and [Tf2N]- anions with the GNF are observed for the [DPy][BF4]@GNF (-23.56 kcal/mol), [DPy][PF6]@GNF (-29.29 kcal/mol), and [DPyrr][Tf2N]@GNF (-24.74 kcal/mol) complexes, respectively. Our results show that the adsorption of the GDILs on the GNF leads to the decrease of the chemical potential (μ), chemical hardness (η), and HOMO-LUMO energy gap (Eg) values and an increase in the electrophilicity index (ω) value of the GNF. In addition, the effect of GDIL adsorption on the UV-vis absorption spectrum was studied at the TD-M06-2X/cc-pVDZ level of theory. We find that the adsorption of GDILs results in minimal change in the shape of the main absorption peak (at λ = 363 nm) in the GNF spectrum and only shifts it to higher wavelengths. On the other hand, a new peak appears in the GNF spectrum upon adsorption of [DPy][Y] (Y = [BF4]-, [PF6]-, and [Tf2N]-) due to the relatively strong π···π interactions between the [DPy]+ dication and GNF. Finally, the transition density matrix (TDM) heat maps show that electron transfers related to the excitation states in the GDIL@GNF complexes occur mainly through π(C=C) → π*(C=C) transitions in the GNF and the transitions from [DPy]+ dication to the GNF.
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Affiliation(s)
- Mehdi Shakourian-Fard
- Department
of Chemical Engineering, Birjand University
of Technology, Birjand,
P.O. Box 97175/569, Iran
| | | | - Ganesh Kamath
- Dalzierfiver
LLC, 3500 Carlfied St., El Sobrante, California 94803, United States
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Shakouri S, Khalili B, Nikpasand M, Kefayati H. Adsorption of Tunable aryl alkyl ionic liquids (TILs) on the graphene and Defective graphene nanosheets: A DFT Study. J Mol Graph Model 2023; 125:108612. [PMID: 37657330 DOI: 10.1016/j.jmgm.2023.108612] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Revised: 08/22/2023] [Accepted: 08/22/2023] [Indexed: 09/03/2023]
Abstract
Optical and electronic characteristics of the graphene nanosheets (GNS) could be altered by some structural defects such as double-vacancy and Stone-Wales ones. The physisorption manner of [MPI][BF4], [MPT1][BF4], [MPT2][BF4], and [MPTT][BF4] ionic liquids on intact and defective GNS surfaces were investigated using M06-2X/cc-pVDZ computational method. Capability for adsorption on the DV and SW graphene surfaces by TILs is increased by about 1.0-4.3 and 0.4-2.0 kcal/mol respectively. The electrostatic potential of the GNS-DV surface is more negative than the GNS-SW one which enables it to interact with cation parts of the adsorbed TILs so extensively. The highest adsorption energy belongs to the [MPI][BF4]/GNS-DV system. Adsorption of the TILs on the GNS surfaces leads to a decrease in the energy of the LUMO molecular orbital as well as their energy gap of them. Results revealed that the electrical conductivity, as well as absorption spectra of the GNS surfaces, are affected by TILs adsorption and defect nature.
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Affiliation(s)
- Soheila Shakouri
- Department of Chemistry, Rasht Branch, Islamic Azad University, Rasht, Iran
| | - Behzad Khalili
- Department of Chemistry, Faculty of Sciences, University of Guilan, Rasht, Iran.
| | - Mohammad Nikpasand
- Department of Chemistry, Rasht Branch, Islamic Azad University, Rasht, Iran
| | - Hasan Kefayati
- Department of Chemistry, Rasht Branch, Islamic Azad University, Rasht, Iran
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New task-specific ionic liquids based on phenyl diazenyl methyl pyridinium cation: Energetic, electronic and optical properties exploration based on DFT calculations. J Mol Graph Model 2023; 118:108352. [DOI: 10.1016/j.jmgm.2022.108352] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2022] [Revised: 09/18/2022] [Accepted: 09/27/2022] [Indexed: 11/06/2022]
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Dicationic ionic liquids (DILs) based on the phenyl and perfluoro-phenyl π-spacer-linked triazolium cations: a quantum chemical comparative study. Theor Chem Acc 2022. [DOI: 10.1007/s00214-022-02931-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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An insight into interaction of the uracil, thymine and cytosine biomolecules with methimazole anti-thyroid drug: DFT and GD3‑DFT approaches. Struct Chem 2022. [DOI: 10.1007/s11224-022-02059-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
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Exploring of spacer fluorination effect on the characteristics and physicochemical properties of the newly designed task specific dicationic imidazolium-based ionic liquids: A quantum chemical approach. J Fluor Chem 2022. [DOI: 10.1016/j.jfluchem.2022.110026] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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The Influence of Ionic Liquids Adsorption on the Electronic and Optical Properties of Phosphorene and Arsenene with Different Phases: A Computational Study. Molecules 2022; 27:molecules27082518. [PMID: 35458716 PMCID: PMC9027769 DOI: 10.3390/molecules27082518] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2022] [Revised: 04/08/2022] [Accepted: 04/10/2022] [Indexed: 01/27/2023] Open
Abstract
Density functional theory (DFT) calculations have been performed to investigate the interfacial interactions of ionic liquids (ILs) on the α- and β-phases of phosphorene (P) and arsenene (As). Nine representative ILs based on the combinations of 1-ethyl-3-methylimidazolium ([EMIM]+), N-methylpyridinium ([MPI]+), and trimethylamine ([TMA]+) cations paired to tetrafluoroborate ([BF4]−), trifluoromethanesulfonate ([TFO]−), and chloridion (Cl−) anions were used as adsorbates on the 2D P and As nanosheets with different phases to explore the effect of IL adsorption on the electronic and optical properties of 2D materials. The calculated structure, adsorption energy, and charge transfer suggest that the interaction between ILs and P and As nanosheets is dominated by noncovalent forces, and the most stable adsorption structures are characterized by the simultaneous interaction of the cation and anion with the surface, irrespective of the types of ILs and surfaces. Furthermore, the IL adsorption leads to the larger change in the electronic properties of β-phase P and As than those of their α-phase counterparts, which demonstrates that the adsorption properties are not only related to the chemical elements, but also closely related to the phase structures. The present results provide insight into the further applications of ILs and phosphorene (arsenene) hybrid materials.
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Shakourian-Fard M, Maryamdokht Taimoory S, Ghenaatian HR, Kamath G, Trant JF. Effect of mono-vacant defects on the adsorption properties of deep eutectic solvents onto hexagonal boron-nitride nanoflakes. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2021.118122] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Khalili B, Mamaghani M, Bazdid-Vahdati N. Structural design and physicochemical specifications exploring of the new di-cationic ionic liquids (D-ILs) composed of para-xylyl linked N-Methylimidazolium cation and various anions: a full M06–2X computational study. Theor Chem Acc 2022. [DOI: 10.1007/s00214-021-02862-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Bhai S, Ganguly B. Exploiting the optical sensing of fluorophore-tagged DNA nucleobases on hexagonal BN and Al-doped BN sheets: a computational study. Phys Chem Chem Phys 2021; 24:829-841. [PMID: 34928284 DOI: 10.1039/d1cp04009j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Hexagonal boron nitride (h-BN) sheets possess high fluorescence quenching ability and high affinity towards DNA/RNA, and they can be used as a sensing platform for rapid detection. We report the absorption and emission properties of DNA nucleobases such as adenine (A), cytosine (C), guanine (G), and thymine (T) tagged with benzoxazole on h-BN and aluminium-doped h-BN (Al_hBN) sheets. The binding affinity of studied nucleobases on h-BN sheets at the M062X/6-31G* level of theory showed the following adsorption trend: G ≥ T ≥ A > C, which is in good agreement with the previous results. The calculated stability trend of nucleobases on the Al_hBN sheet follows as C > G > A > T at the same level of theory. The physically adsorbed behavior of nucleobases to h-BN sheets was confirmed by the non-covalent interactions (NCIs) and the total density of states (TDOS) plots. The NCI results indicated that van der Waals interactions contribute significantly to the adsorption of nucleobases on h-BN sheets. Atoms in molecules (AIM) calculations revealed the electrostatic interactions between nucleobases and the Al_hBN sheet. The quenching phenomenon of nucleobase-tagged fluorophores on h-BN and Al_hBN sheets was investigated by TD-DFT calculations using the same level of theory. The thymine-tagged fluorophore upon adsorption to the pristine h-BN sheet was found to be blue-shifted (∼43 nm); however, the guanine-tagged fluorophore with Al_hBN showed a remarkable difference from other nucleobase-tagged fluorophores in the absorption and emission spectrum. Guanine-tagged fluorophores showed a smaller blue shift (∼7 nm) in the absorption spectrum; however, it showed a larger red shift (∼55 nm) than the other nucleobase-tagged fluorophores on Al_hBN sheets and can be useful in recognizing a sequence-specific phenomenon as a fluorescent biosensor of DNA and RNA to ascertain the presence of such nucleobases.
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Affiliation(s)
- Surjit Bhai
- Computational and Simulation Unit (Analytical and Environment Science Division and Centralized Instrument Facility) CSIR-Central Salt & Marine Chemicals Research Institute, Bhavnagar, Gujarat, 364002, India. .,Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, Uttar Pradesh, India.,CSIR-CSMCRI, Bhavnagar-364002, Gujarat, India
| | - Bishwajit Ganguly
- Computational and Simulation Unit (Analytical and Environment Science Division and Centralized Instrument Facility) CSIR-Central Salt & Marine Chemicals Research Institute, Bhavnagar, Gujarat, 364002, India. .,Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, Uttar Pradesh, India.,CSIR-CSMCRI, Bhavnagar-364002, Gujarat, India
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Interfacial interactions and structures of imidazolium-based ionic liquids on black phosphorus surface from first-principles. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.116562] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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Shakourian-Fard M, Ghenaatian HR, Kamath G, Taimoory SM. Unraveling the effect of nitrogen doping on graphene nanoflakes and the adsorption properties of ionic liquids: A DFT study. J Mol Liq 2020. [DOI: 10.1016/j.molliq.2020.113400] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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