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Mohamed M, Abrigach F, El Kadiri S, Omar Said Hassane S, Abdellattif MH, Touzani R. Pyrazole, imidazole and triazole: In silico, docking and ADMET studies against SARS-CoV-2. MATERIALS TODAY. PROCEEDINGS 2023; 72:3686-3695. [PMID: 36101672 PMCID: PMC9458701 DOI: 10.1016/j.matpr.2022.09.060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
The Coronavirus pandemic, Covid-19 and SARS-Cov-2 put multidisciplinary research by chemists, biologists, pharmacists and theorists necessary and primordial task to find new active biomolecules which will be beneficial for all humanity. The azoles drugs are electronic rich, they should be used with caution, and an understanding of their pharmacokinetic profile, safety, absorption, distribution, excretion, metabolism, toxicity, and drug-drug interaction profiles is important to provide effective and cure therapy. In these objectives and goals, twenty aromatic nitrogen heterocycle compounds were chosen for in silico, docking and AMET studies against SARS-CoV-2. In this paper with respect to the protein S of SARS-CoV-2 properties, the GAUSSIAN 09w program used in the semi-empirical method at the AM1 level with the optimization of the geometry of the structures. Then Toxicity and physicochemical properties were evaluated by AMET. Molecular docking investigations conducted; the binding affinities as well as interactions of the sieve compounds with the SRAS-CoV-2 protein Spike using PyRx software. In general, the preliminary results are fructuous and needs further in vitro testes.
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Affiliation(s)
- Mounir Mohamed
- University Mohammed Premier, Faculty of Sciences, Department of Chemistry, Laboratory of Applied Chemistry and Environment (LCAE), Oujda, Morocco,Corresponding author
| | - Farid Abrigach
- University Mohammed Premier, Faculty of Sciences, Department of Chemistry, Laboratory of Applied Chemistry and Environment (LCAE), Oujda, Morocco
| | - Sghir El Kadiri
- University Mohammed Premier, Faculty of Sciences, Department of Chemistry, Laboratory of Applied Chemistry and Environment (LCAE), Oujda, Morocco
| | | | | | - Rachid Touzani
- University Mohammed Premier, Faculty of Sciences, Department of Chemistry, Laboratory of Applied Chemistry and Environment (LCAE), Oujda, Morocco
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Ganapathi P, Ganesan K, Dharmasivam M, Alam MM, Mohammed A. Efficient Antibacterial Dimeric Nitro Imidazolium Type of Ionic Liquids from a Simple Synthetic Approach. ACS OMEGA 2022; 7:44458-44469. [PMID: 36506216 PMCID: PMC9730758 DOI: 10.1021/acsomega.2c06833] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/23/2022] [Accepted: 11/08/2022] [Indexed: 06/17/2023]
Abstract
Synthesis of dimeric nitro-substituted imidazolium salts under the conventional/solvent-free method is reported. The solvent-free method is more important than the conventional one because of its shorter reaction time, higher yield from easily available starting material, environmental safety, and so forth. Counter anion exchange is carried out using inorganic salt, which is dissolved in deionized water at room temperature. In antibacterial studies, dimeric nitro-substituted imidazolium cations with bromide counter anions showed excellent inhibition against E. coli and P. aeruginosa bacteria. These experimental results were further supported by molecular docking studies. All the compounds (3-6) (a-d) showed excellent antibacterial activity than the standard drugs (gentamycin, nalidixic acid, oflaxacin, ciproflaxacin, and amikacin). Molecular docking studies showed strong hydrogen bonding, polar and hydrophobic interactions between the dimeric imidazolium salts, and Escherichia coli/Pseudomonas aeruginosa/Proteus vulgaris/Staphylococcus aureus receptors.
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Affiliation(s)
- Pandurangan Ganapathi
- PG
& Research Department of Chemistry, Presidency College (Autonomous), Chennai 600 005, India
| | - Kilivelu Ganesan
- PG
& Research Department of Chemistry, Presidency College (Autonomous), Chennai 600 005, India
| | - Mahendiran Dharmasivam
- Centre
for Cancer Cell Biology and Drug Discovery, Griffith Institute for
Drug Discovery, Griffith University, Nathan, Brisbane, Queensland 4111, Australia
| | - Mohammed Mujahid Alam
- Department
of Chemistry, College of Science, King Khalid
University, P.O. Box 9004, Abha 61413, Kingdom of Saudi Arabia
| | - Amanullah Mohammed
- Department
of Clinical Biochemistry, College of Medicine, King Khalid University, Abha 61413, Kingdom of Saudi Arabia
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Titi A, Touzani R, Moliterni A, Giacobbe C, Baldassarre F, Taleb M, Al-Zaqri N, Zarrouk A, Warad I. Ultrasonic Clusterization Process to Prepare [(NNCO) 6Co 4Cl 2] as a Novel Double-Open-Co 4O 6 Cubane Cluster: SXRD Interactions, DFT, Physicochemical, Thermal Behaviors, and Biomimicking of Catecholase Activity. ACS OMEGA 2022; 7:32949-32958. [PMID: 36157745 PMCID: PMC9494679 DOI: 10.1021/acsomega.1c07032] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
A novel double-open-cubane (NNCO)6Co4Cl2 cluster with a Co4O6 core was made available under aqua-ultrasonic open atmosphere conditions for the first time. The ultrasonic clusterization of the (3,5-dimethyl-1H-pyrazol-1-yl)methanol (NNCOH) ligand with CoCl2·6H2O salts in ethanol yielded a high-purity and high-yield cluster product. Energy-dispersive X-ray (EDX), Fourier transform infrared (FT-IR), and ultraviolet (UV)-visible techniques were used to elucidate the clusterization process. The double-open-Co4O6 cubane structure of the (NNCO)6Co4Cl2 cluster was solved by synchrotron single-crystal X-ray diffraction (SXRD) and supported by density functional theory (DFT) optimization and thermogravimetric/differential TG (TG/DTG) measurements; moreover, the DFT structural parameters correlated with the ones determined by SXRD. Molecular electrostatic potential (MEP), Mulliken atomic charge/natural population analysis (MAC/NPA), highest occupied molecular orbital/lowest unoccupied molecular orbital (HOMO/LUMO), density of states (DOS), and GRD quantum analyses were computed at the DFT/B3LYP/6-311G(d,p) theory level. The thermal behavior of the cluster was characterized to support the formation of the Co4O6 core as a stable final product. The catalytic property of the (NNCO)6Co4Cl2 cluster was predestined for the oxidation process of 3,5-DTBC diol (3,5-di-tert-butylbenzene-1,2-diol) to 3,5-DTBQ dione (3,5-di-tert-butylcyclohexa-3,5-diene-1,2-dione).
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Affiliation(s)
- Abderrahim Titi
- Laboratory
of Applied and Environmental Chemistry, Mohammed First University, Oujda60000, Morocco
| | - Rachid Touzani
- Laboratory
of Applied and Environmental Chemistry, Mohammed First University, Oujda60000, Morocco
| | - Anna Moliterni
- Institute
of Crystallography, CNR, Via Amendola, 122/O, Bari70126, Italy
| | - Carlotta Giacobbe
- European
Synchrotron Radiation Facility, 71 Avenue Des Martyrs, Grenoble38040, France
| | | | - Mustapha Taleb
- Laboratory
of Engineering, Organometallic, Molecular and Environment (LIMOME),
Faculty of Science, Université Sidi
Mohamed Ben Abdellah, Fez30000, Morocco
| | - Nabil Al-Zaqri
- Department
of Chemistry, College of Science, King Saud
University, P.O. Box 2455, Riyadh11451, Saudi Arabia
| | - Abdelkader Zarrouk
- Laboratory
of Materials, Nanotechnology, and Environment, Faculty of Sciences, Mohammed V University in Rabat, P.O. Box 1014, Agdal-Rabat11000, Morocco
| | - Ismail Warad
- Department
of Chemistry, AN-Najah National University, P.O. Box 7, Nablus P400, Palestine
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Titi A, Touzani R, Moliterni A, Hadda TB, Messali M, Benabbes R, Berredjem M, Bouzina A, Al-Zaqri N, Taleb M, Zarrouk A, Warad I. Synthesis, structural, biocomputational modeling and antifungal activity of novel armed pyrazoles. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133156] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Gao X, Li Z, Zhang D, Zhao X, Wang Y. Synthesis and kinetics of 2,5-dicyanofuran in the presence of hydroxylamine ionic liquid salts. Chin J Chem Eng 2022. [DOI: 10.1016/j.cjche.2021.12.026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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Correia DM, Fernandes LC, Fernandes MM, Hermenegildo B, Meira RM, Ribeiro C, Ribeiro S, Reguera J, Lanceros-Méndez S. Ionic Liquid-Based Materials for Biomedical Applications. NANOMATERIALS (BASEL, SWITZERLAND) 2021; 11:2401. [PMID: 34578716 PMCID: PMC8471968 DOI: 10.3390/nano11092401] [Citation(s) in RCA: 40] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/05/2021] [Revised: 09/01/2021] [Accepted: 09/08/2021] [Indexed: 11/16/2022]
Abstract
Ionic liquids (ILs) have been extensively explored and implemented in different areas, ranging from sensors and actuators to the biomedical field. The increasing attention devoted to ILs centers on their unique properties and possible combination of different cations and anions, allowing the development of materials with specific functionalities and requirements for applications. Particularly for biomedical applications, ILs have been used for biomaterials preparation, improving dissolution and processability, and have been combined with natural and synthetic polymer matrixes to develop IL-polymer hybrid materials to be employed in different fields of the biomedical area. This review focus on recent advances concerning the role of ILs in the development of biomaterials and their combination with natural and synthetic polymers for different biomedical areas, including drug delivery, cancer therapy, tissue engineering, antimicrobial and antifungal agents, and biosensing.
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Affiliation(s)
- Daniela Maria Correia
- Centre of Physics, University of Minho, 4710-058 Braga, Portugal; (L.C.F.); (M.M.F.); (R.M.M.); (C.R.); (S.R.)
- Centre of Chemistry, University of Trás-os-Montes e Alto Douro, 5000-801 Vila Real, Portugal
| | - Liliana Correia Fernandes
- Centre of Physics, University of Minho, 4710-058 Braga, Portugal; (L.C.F.); (M.M.F.); (R.M.M.); (C.R.); (S.R.)
| | - Margarida Macedo Fernandes
- Centre of Physics, University of Minho, 4710-058 Braga, Portugal; (L.C.F.); (M.M.F.); (R.M.M.); (C.R.); (S.R.)
- CEB—Centre of Biological Engineering, University of Minho, 4710-057 Braga, Portugal
| | - Bruno Hermenegildo
- BCMaterials, Basque Center for Materials, Applications and Nanostructures, UPV/EHU Science Park, 48940 Leioa, Spain;
| | - Rafaela Marques Meira
- Centre of Physics, University of Minho, 4710-058 Braga, Portugal; (L.C.F.); (M.M.F.); (R.M.M.); (C.R.); (S.R.)
- CEB—Centre of Biological Engineering, University of Minho, 4710-057 Braga, Portugal
| | - Clarisse Ribeiro
- Centre of Physics, University of Minho, 4710-058 Braga, Portugal; (L.C.F.); (M.M.F.); (R.M.M.); (C.R.); (S.R.)
- CEB—Centre of Biological Engineering, University of Minho, 4710-057 Braga, Portugal
| | - Sylvie Ribeiro
- Centre of Physics, University of Minho, 4710-058 Braga, Portugal; (L.C.F.); (M.M.F.); (R.M.M.); (C.R.); (S.R.)
- IB-S—Institute for Research and Innovation on Bio-Sustainability, University of Minho, 4710-057 Braga, Portugal
| | - Javier Reguera
- BCMaterials, Basque Center for Materials, Applications and Nanostructures, UPV/EHU Science Park, 48940 Leioa, Spain;
| | - Senentxu Lanceros-Méndez
- Centre of Physics, University of Minho, 4710-058 Braga, Portugal; (L.C.F.); (M.M.F.); (R.M.M.); (C.R.); (S.R.)
- IKERBASQUE, Basque Foundation for Science, 48009 Bilbao, Spain
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Curreri AM, Mitragotri S, Tanner EEL. Recent Advances in Ionic Liquids in Biomedicine. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2021; 8:e2004819. [PMID: 34245140 PMCID: PMC8425867 DOI: 10.1002/advs.202004819] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2020] [Revised: 03/04/2021] [Indexed: 05/04/2023]
Abstract
The use of ionic liquids and deep eutectic solvents in biomedical applications has grown dramatically in recent years due to their unique properties and their inherent tunability. This review will introduce ionic liquids and deep eutectics and discuss their biomedical applications, namely solubilization of drugs, creation of active pharmaceutical ingredients, delivery of pharmaceuticals through biological barriers, stabilization of proteins and other nucleic acids, antibacterial agents, and development of new biosensors. Current challenges and future outlooks are discussed, including biocompatibility, the potential impact of the presence of impurities, and the importance of understanding the microscopic interactions in ionic liquids in order to design task-specific solvents.
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Affiliation(s)
- Alexander M. Curreri
- John A. Paulson School of Engineering and Applied SciencesHarvard UniversityCambridgeMA02138USA
- Wyss Institute of Biologically Inspired EngineeringBostonMA02115USA
| | - Samir Mitragotri
- John A. Paulson School of Engineering and Applied SciencesHarvard UniversityCambridgeMA02138USA
- Wyss Institute of Biologically Inspired EngineeringBostonMA02115USA
| | - Eden E. L. Tanner
- John A. Paulson School of Engineering and Applied SciencesHarvard UniversityCambridgeMA02138USA
- Present address:
Department of Chemistry and BiochemistryThe University of MississippiUniversityMS38677USA
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Experimental and theoretical assessment of new and eco–friendly thioglycoluril derivative as an effective corrosion inhibitor of St2 steel in the aggressive hydrochloric acid with sulfate ions. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.116168] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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A new mixed pyrazole-diamine/Ni(II) complex, Crystal structure, physicochemical, thermal and antibacterial investigation. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130304] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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A gossypol derivative as an efficient corrosion inhibitor for St2 steel in 1 M HCl + 1 M KCl: An experimental and theoretical investigation. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.115475] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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Noorhisham NA, Amri D, Mohamed AH, Yahaya N, Ahmad NM, Mohamad S, Kamaruzaman S, Osman H. Characterisation techniques for analysis of imidazolium-based ionic liquids and application in polymer preparation: A review. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.115340] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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