1
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Pronina AA, Podrezova AG, Grigoriev MS, Hasanov KI, Sadikhova ND, Akkurt M, Bhattarai A. Crystal structure and Hirshfeld surface analysis of 1-[6-bromo-2-(4-fluoro-phen-yl)-1,2,3,4-tetra-hydroquinolin-4-yl]pyrrolidin-2-one. Acta Crystallogr E Crystallogr Commun 2024; 80:777-782. [PMID: 38974158 PMCID: PMC11223703 DOI: 10.1107/s2056989024005826] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2024] [Accepted: 06/14/2024] [Indexed: 07/09/2024]
Abstract
In the title compound, C19H18BrFN2O, the pyrrolidine ring adopts an envelope conformation. In the crystal, mol-ecules are linked by inter-molecular N-H⋯O, C-H⋯O, C-H⋯F and C-H⋯Br hydrogen bonds, forming a three-dimensional network. In addition, C-H⋯π inter-actions connect mol-ecules into ribbons along the b-axis direction, consolidating the mol-ecular packing. The inter-molecular inter-actions in the crystal structure were qu-anti-fied and analysed using Hirshfeld surface analysis.
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Affiliation(s)
| | | | - Mikhail S. Grigoriev
- Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences, Leninskiy prospect 31-4, Moscow 119071, Russian Federation
| | - Khudayar I. Hasanov
- Western Caspian University, Istiqlaliyyat Street 31, AZ1001, Baku, Azerbaijan
- Azerbaijan Medical University, Scientific Research Centre (SRC), A. Kasumzade St. 14. AZ 1022, Baku, Azerbaijan
| | - Nurlana D. Sadikhova
- Department of Chemistry, Baku State University, Z. Xalilov Str, Az 1148 Baku, Azerbaijan
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C (Tribhuvan University) Biratnagar, Nepal
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2
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Podrezova AG, Nikitina EV, Grigoriev MS, Akkurt M, Hasanov KI, Sadikhova ND, Bhattarai A. Crystal structure and Hirshfeld surface analysis of ( Z)-4-oxo-4-{phen-yl[(thio-phen-2-yl)meth-yl]amino}-but-2-enoic acid. Acta Crystallogr E Crystallogr Commun 2024; 80:572-576. [PMID: 38845716 PMCID: PMC11151315 DOI: 10.1107/s2056989024003967] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2024] [Accepted: 04/30/2024] [Indexed: 06/09/2024]
Abstract
In the title compound, C15H13NO3S, the mol-ecular conformation is stable with the intra-molecular O-H⋯O hydrogen bond forming a S(7) ring motif. In the crystal, mol-ecules are connected by C-H⋯O hydrogen bonds, forming C(8) chains running along the a-axis direction. Cohesion of the packing is provided by weak van der Waals inter-actions between the chains. A Hirshfeld surface analysis was undertaken to investigate and qu-antify the inter-molecular inter-actions. The thio-phene ring is disordered in a 0.9466 (17):0.0534 (17) ratio over two positions rotated by 180°.
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Affiliation(s)
| | | | - Mikhail S. Grigoriev
- A. N. Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences, Leninsky pr. 31, bld. 4, Moscow, Russian Federation
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye
| | - Khudayar I. Hasanov
- Azerbaijan Medical University, Scientific Research Centre (SRC), A. Kasumzade St. 14. AZ 1022, Baku, Azerbaijan
- Western Caspian University, Istiqlaliyyat Street 31, AZ1001, Baku, Azerbaijan
| | - Nurlana D. Sadikhova
- Department of Chemistry, Baku State University, Z. Xalilov Str. 23, Az 1148 Baku, Azerbaijan
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C (Tribhuvan University), Biratnagar, Nepal
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3
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Sadikhova ND, Akkurt M, Ismayilov VM, Yusubov NN, Hasanov KI, Bhattarai A. Crystal structure and Hirshfeld surface analysis of 3,3'-[ethane-1,2-diylbis(-oxy)]bis-(5,5-di-methyl-cyclo-hex-2-en-1-one) including an unknown solvate. Acta Crystallogr E Crystallogr Commun 2024; 80:615-619. [PMID: 38845722 PMCID: PMC11151306 DOI: 10.1107/s2056989024004286] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2024] [Accepted: 05/08/2024] [Indexed: 06/09/2024]
Abstract
The title mol-ecule, C18H26O4, consists of two symmetrical halves related by the inversion centre at the mid-point of the central -C-C- bond. The hexene ring adopts an envelope conformation. In the crystal, the mol-ecules are connected into dimers by C-H⋯O hydrogen bonds with R 2 2(8) ring motifs, forming zigzag ribbons along the b-axis direction. According to a Hirshfeld surface analysis, H⋯H (68.2%) and O⋯H/H⋯O (25.9%) inter-actions are the most significant contributors to the crystal packing. The contribution of some disordered solvent to the scattering was removed using the SQUEEZE routine [Spek (2015 ▸). Acta Cryst. C71, 9-18] in PLATON. The solvent contribution was not included in the reported mol-ecular weight and density.
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Affiliation(s)
- Nurlana D. Sadikhova
- Department of Chemistry, Baku State University, Z. Khalilov Str. 23, Az 1148 Baku, Azerbaijan
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye
| | - Valeh M. Ismayilov
- Department of Chemistry, Baku State University, Z. Khalilov Str. 23, Az 1148 Baku, Azerbaijan
| | - Niftali N. Yusubov
- Department of Chemistry, Baku State University, Z. Khalilov Str. 23, Az 1148 Baku, Azerbaijan
| | - Khudayar I. Hasanov
- Western Caspian University, Istiqlaliyyat Street 31, AZ1001, Baku, Azerbaijan
- Azerbaijan Medical University, Scientific Research Centre (SRC), A. Kasumzade St. 14. AZ 1022, Baku, Azerbaijan
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C (Tribhuvan University) Biratnagar, Nepal
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4
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Burkin GM, Kvyatkovskaya EA, Khrustalev VN, Hasanov KI, Sadikhova ND, Akkurt M, Bhattarai A. Crystal structure and Hirshfeld surface analysis of 8-benzyl-1-[(4-methyl-phen-yl)sulfon-yl]-2,7,8,9-tetra-hydro-1 H-3,6:10,13-diep-oxy-1,8-benzodi-aza-cyclo-penta-decine ethanol hemisolvate. Acta Crystallogr E Crystallogr Commun 2024; 80:418-422. [PMID: 38584731 PMCID: PMC10993595 DOI: 10.1107/s2056989024002275] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2024] [Accepted: 03/08/2024] [Indexed: 04/09/2024]
Abstract
The asymmetric unit of the title compound, 2C31H28N2O4S·C2H6O, contains a parent mol-ecule and a half mol-ecule of ethanol solvent. The main compound stabilizes its mol-ecular conformation by forming a ring with an R 1 2(7) motif with the ethanol solvent mol-ecule. In the crystal, mol-ecules are connected by C-H⋯O and O-H⋯O hydrogen bonds, forming a three-dimensional network. In addition, C-H⋯π inter-actions also strengthen the mol-ecular packing.
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Affiliation(s)
- Gleb M. Burkin
- RUDN University, 6 Miklukho-Maklaya St., Moscow 117198, Russian Federation
| | | | - Victor N. Khrustalev
- RUDN University, 6 Miklukho-Maklaya St., Moscow 117198, Russian Federation
- Zelinsky Institute of Organic Chemistry of RAS, 4, 7 Leninsky Prospect, 119991 Moscow, Russian Federation
| | - Khudayar I. Hasanov
- Western Caspian University, Istiqlaliyyat Street 31, AZ1001, Baku, Azerbaijan
- Azerbaijan Medical University, Scientific Research Centre (SRC), A. Kasumzade St. 14. Baku, AZ 1022, Azerbaijan
| | - Nurlana D. Sadikhova
- Department of Chemistry, Baku State University, Z. Xalilov Str. 23, Az 1148 Baku, Azerbaijan
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C (Tribhuvan University), Biratnagar, Nepal
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5
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Gupta T, Rani D, Nainwal LM, Badhwar R. Advancement in chiral heterocycles for the antidiabetic activity. Chirality 2024; 36:e23637. [PMID: 38384150 DOI: 10.1002/chir.23637] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2023] [Revised: 11/19/2023] [Accepted: 12/11/2023] [Indexed: 02/23/2024]
Abstract
For the synthesis and development of pharmaceuticals, chirality is an important structural component. Chiral heterocyclic compounds have annoyed the interest of synthetic chemists who are working to create useful and efficient techniques for these molecules. As indicated by the expanding number of chiral drugs created in the last two decades, the link between chirality and pharmacological activity has become more important in the pharmaceutical and biopharmaceutical industries. Approximately 65% of currently used drugs are chiral, and many of them are promoted as racemates in many circumstances. There are a growing number of new chiral heterocyclic compounds with important biological properties and intriguing uses in medical chemistry and drug discovery. In this study, we review current breakthroughs in chiral heterocycles and their different physiological activities that have been published in the last year (from 2010 to early 2023). This study focuses on the current trends in the use of chiral heterocycles in drug design and the creation of several powerful and competent candidates for diabetic illnesses.
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Affiliation(s)
- Tinku Gupta
- Department of Pharmacognosy & Phytochemistry, School of Pharmaceutical Education & Research, Jamia Hamdard, New Delhi, India
| | - Dimpy Rani
- School of Medical and Allied Sciences, G.D. Goenka University, Haryana, India
| | - Lalit Mohan Nainwal
- Department of Pharmaceutical Chemistry, KIET School of Pharmacy, KIET Group of Institutions, Ghaziabad, India
| | - Reena Badhwar
- Department of Pharmacy, SGT University, Budhera, Haryana, India
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6
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Yuriy K, Kusdemir G, Volodymyr P, Tüzün B, Taslimi P, Karatas OF, Anastasia K, Maryna P, Sayın K. A biochemistry-oriented drug design: synthesis, anticancer activity, enzymes inhibition, molecular docking studies of novel 1,2,4-triazole derivatives. J Biomol Struct Dyn 2024; 42:1220-1236. [PMID: 37671856 DOI: 10.1080/07391102.2023.2253906] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Accepted: 03/28/2023] [Indexed: 09/07/2023]
Abstract
In this study, we researched the reactions of 5-(5-bromofuran-2-yl)-4-methyl-1,2,4-triazole-3-thiol and 5-thiophene-(3-ylmethyl)-4R-1,2,4-triazole-3-thiols with some halogen-containing compounds, a number of new compounds were synthesized (1.1-1.5 and 2.1-2.8). These compounds showed excellent to good inhibitory activities on acetylcholinesterase (AChE) and butyrylcholinesterase (BChE) enzymes. For obtaining the effects of these compounds on AChE and BChE enzymes were determined spectrophotometrically according to Ellman. IC50 values of these enzymes were ranging between 1.63 and 17.68 nM for AChE and 8.71 and 84.02 nM for BChE. After, prostate cancer is the second leading cause of cancer-related mortality for men over the age of 65 in developed countries. Current treatment options remain limited in the treatment of advanced-stage prostate cancer leading to biochemical recurrence in almost 40% of the patients. Therefore, there is an urgent need for development of novel therapeutic tools for treatment of prostate cancer patients. In this study, we aimed at analyzing the potential of all compounds against prostate cancer cells. We found that, of the tested compounds, 2.1, 2.2 and 2.3 showed significant cytotoxic activities against PC3 prostate cancer cells, although their effect on the viability of normal prostate cells was limited. These findings suggest their selective targeting potential for prostate cancer cells and offer them as candidate therapeutic agents against prostate cancer. The inhibitory activities of some chemical compounds, such as (1.1-1.5 and 2.1-2.8) were assessed by performing the molecular docking study in the presence of AChE, BChE and prostate cancer protein. MM/GBSA methods are calculated binding free energy. Finally, ADME/T analysis was performed to examine the drug properties of the 13 studied molecules.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Karpenko Yuriy
- Department of Natural Sciences for Foreign Students and Toxicological Chemistry, Zaporizhzhia State Medical University, Zaporizhzhia, Ukraine
| | - Gulnur Kusdemir
- Molecular Biology and Genetics Department, Erzurum Technical University, Erzurum, Turkey
- High Technology Application and Research Center, Erzurum Technical University, Erzurum, Turkey
| | - Parchenko Volodymyr
- Department of Natural Sciences for Foreign Students and Toxicological Chemistry, Zaporizhzhia State Medical University, Zaporizhzhia, Ukraine
| | - Burak Tüzün
- Plant and Animal Production Department, Technical Sciences Vocational School of Sivas, Sivas Cumhuriyet University, Sivas, Turkey
| | - Parham Taslimi
- Department of Biotechnology, Faculty of Science, Bartin University, Bartin, Turkey
| | - Omer Faruk Karatas
- Molecular Biology and Genetics Department, Erzurum Technical University, Erzurum, Turkey
- High Technology Application and Research Center, Erzurum Technical University, Erzurum, Turkey
| | - Khilkovets Anastasia
- Department of Natural Sciences for Foreign Students and Toxicological Chemistry, Zaporizhzhia State Medical University, Zaporizhzhia, Ukraine
| | - Parchenko Maryna
- Department of Natural Sciences for Foreign Students and Toxicological Chemistry, Zaporizhzhia State Medical University, Zaporizhzhia, Ukraine
| | - Koray Sayın
- Deparment of Chemistry, Sivas Cumhuriyet University, Sivas, Turkey
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7
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Hajiyeva SR, Huseynov FE, Atioğlu Z, Akkurt M, Bhattarai A. Crystal structure and Hirshfeld surface analysis of ( E)-2-[2-(2-amino-1-cyano-2-oxo-ethyl-idene)hydrazin-1-yl]benzoic acid N, N-di-methylformamide monosolvate. Acta Crystallogr E Crystallogr Commun 2024; 80:110-116. [PMID: 38333118 PMCID: PMC10848978 DOI: 10.1107/s2056989023011118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2023] [Accepted: 12/29/2023] [Indexed: 02/10/2024]
Abstract
In the title compound, C10H8N4O3·C3H7NO, the asymmetric unit contains two crystallographically independent mol-ecules A and B, each of which has one DMF solvate mol-ecule. Mol-ecules A and B both feature intra-molecular N-H⋯O hydrogen bonds, forming S(6) ring motifs and consolidating the mol-ecular configuration. In the crystal, N-H⋯O and O-H⋯O hydrogen bonds connect mol-ecules A and B, forming R 2 2(8) ring motifs. Weak C-H⋯O inter-actions link the mol-ecules, forming layers parallel to the (12) plane. The DMF solvent mol-ecules are also connected to the main mol-ecules (A and B) by N-H⋯O hydrogen bonds. π-π stacking inter-actions [centroid-to-centroid distance = 3.8702 (17) Å] between the layers also increase the stability of the mol-ecular structure in the third dimension. According to the Hirshfeld surface study, O⋯H/H⋯O inter-actions are the most significant contributors to the crystal packing (27.5% for mol-ecule A and 25.1% for mol-ecule B).
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Affiliation(s)
- Sevinc R. Hajiyeva
- Department of Ecology and Soil Sciences, Baku State University, Z. Xalilov Str. 33, Az 1148 Baku, Azerbaijan
| | - Fatali E. Huseynov
- Department of Ecology and Soil Sciences, Baku State University, Z. Xalilov Str. 33, Az 1148 Baku, Azerbaijan
| | - Zeliha Atioğlu
- Department of Aircraft Electrics and Electronics, School of Applied Sciences, Cappadocia University, Mustafapaşa, 50420 Ürgüp, Nevşehir, Türkiye
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C (Tribhuvan University) Biratnagar, Nepal
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8
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Guliyeva NA, Burkin GM, Annadurdyyeva S, Khrustalev VN, Atioğlu Z, Akkurt M, Bhattarai A. Crystal structure and Hirshfeld surface analysis of dimethyl 4-hy-droxy-5,4'-dimethyl-2'-(toluene-4-sulfonyl-amino)-biphenyl-2,3-di-carboxyl-ate. Acta Crystallogr E Crystallogr Commun 2024; 80:62-66. [PMID: 38312160 PMCID: PMC10833369 DOI: 10.1107/s205698902301071x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Accepted: 12/14/2023] [Indexed: 02/06/2024]
Abstract
In the title compound, C25H25NO7S, the mol-ecular conformation is stabilized by intra-molecular O-H⋯O and N-H⋯O hydrogen bonds, which form S(6) and S(8) ring motifs, respectively. The mol-ecules are bent at the S atom with a C-SO2-NH-C torsion angle of -70.86 (11)°. In the crystal, mol-ecules are linked by C-H⋯O and N-H⋯O hydrogen bonds, forming mol-ecular layers parallel to the (100) plane. C-H⋯π inter-actions are observed between these layers.
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Affiliation(s)
- Narmina A. Guliyeva
- Department of Organic Substances and Technology of High-Molecular Compounds, SRI Geotechnological Problems of Oil, Gas and Chemistry, Azerbaijan State Oil and Industry University, Azadlig ave. 20, Az-1010 Baku, Azerbaijan
| | - Gleb M. Burkin
- RUDN University, 6 Miklukho-Maklaya St., Moscow 117198, Russian Federation
| | | | - Victor N. Khrustalev
- RUDN University, 6 Miklukho-Maklaya St., Moscow 117198, Russian Federation
- Zelinsky Institute of Organic Chemistry of RAS, 4, 7 Leninsky Prospect, 119991 Moscow, Russian Federation
| | - Zeliha Atioğlu
- Department of Aircraft Electrics and Electronics, School of Applied Sciences, Cappadocia University, Mustafapaşa, 50420 Ürgüp, Nevşehir, Türkiye
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C (Tribhuvan University) Biratnagar, Nepal
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9
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Sadikhova ND, Atioğlu Z, Guliyeva NA, Podrezova AG, Nikitina EV, Akkurt M, Bhattarai A. Crystal structure and Hirshfeld surface analysis of dieth-yl (3a S,3 a1 R,4 S,5 S,6 R,6a S,7 R,9a S)-3a1,5,6,6a-tetra-hydro-1 H,3 H,4 H,7 H-3a,6:7,9a-di-epoxy-benzo[ de]isochromene-4,5-di-carboxyl-ate. Acta Crystallogr E Crystallogr Commun 2024; 80:83-87. [PMID: 38312154 PMCID: PMC10833375 DOI: 10.1107/s2056989023010794] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Accepted: 12/15/2023] [Indexed: 02/06/2024]
Abstract
In the title compound, C18H22O7, two hexane rings and an oxane ring are fused together. The two hexane rings tend toward a distorted boat conformation, while the tetra-hydro-furan and di-hydro-furan rings adopt envelope conformations. The oxane ring is puckered. The crystal structure features C-H⋯O hydrogen bonds, which link the mol-ecules into a three-dimensional network. According to a Hirshfeld surface study, H⋯H (60.3%) and O⋯H/H⋯O (35.3%) inter-actions are the most significant contributors to the crystal packing.
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Affiliation(s)
| | - Zeliha Atioğlu
- Department of Aircraft Electrics and Electronics, School of Applied Sciences, Cappadocia University, Mustafapaşa, 50420 Ürgüp, Nevşehir, Türkiye
| | - Narmina A. Guliyeva
- Department of Organic Substances and Technology of High-Molecular Compounds, SRI "Geotechnological Problems of Oil, Gas and Chemistry", Azerbaijan State Oil and Industry University, Azadlig ave. 20, Az-1010 Baku, Azerbaijan
| | - Alexandra G. Podrezova
- Organic Chemistry Department, Faculty of Science, RUDN University, Miklukho-Maklaya St., 6, Moscow 117198, Russian Federation
| | - Eugeniya V. Nikitina
- Organic Chemistry Department, Faculty of Science, RUDN University, Miklukho-Maklaya St., 6, Moscow 117198, Russian Federation
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C (Tribhuvan University) Biratnagar, Nepal
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10
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Sadikhova ND, Atioğlu Z, Guliyeva NA, Shelukho ER, Polyanskaya DK, Khrustalev VN, Akkurt M, Bhattarai A. Crystal structure and Hirshfeld surface analysis of 3-benzyl-2-[bis(1 H-pyrrol-2-yl)methyl]thiophene. Acta Crystallogr E Crystallogr Commun 2024; 80:72-77. [PMID: 38312153 PMCID: PMC10833363 DOI: 10.1107/s2056989023010800] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Accepted: 12/15/2023] [Indexed: 02/06/2024]
Abstract
In the title compound, C20H18N2S, the asymmetric unit comprises two similar mol-ecules (A and B). In mol-ecule A, the central thio-phene ring makes dihedral angles of 89.96 (12) and 57.39 (13)° with the 1H-pyrrole rings, which are bent at 83.22 (14)° relative to each other, and makes an angle of 85.98 (11)° with the phenyl ring. In mol-ecule B, the corresponding dihedral angles are 89.49 (13), 54.64 (12)°, 83.62 (14)° and 85.67 (11)°, respectively. In the crystal, mol-ecular pairs are bonded to each other by N-H⋯N inter-actions. N-H⋯π and C-H⋯π inter-actions further connect the mol-ecules, forming a three-dimensional network. A Hirshfeld surface analysis indicates that H⋯H (57.1% for mol-ecule A; 57.3% for mol-ecule B), C⋯H/H⋯C (30.7% for mol-ecules A and B) and S⋯H/H⋯S (6.2% for mol-ecule A; 6.4% for mol-ecule B) inter-actions are the most important contributors to the crystal packing.
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Affiliation(s)
| | - Zeliha Atioğlu
- Department of Aircraft Electrics and Electronics, School of Applied Sciences, Cappadocia University, Mustafapaşa, 50420 Ürgüp, Nevşehir, Türkiye
| | - Narmina A. Guliyeva
- Department of Organic Substances and Technology of High-Molecular Compounds, SRI "Geotechnological Problems of Oil, Gas and Chemistry", Azerbaijan State Oil and Industry University, Azadlig ave. 20, Az-1010 Baku, Azerbaijan
| | | | | | - Victor N. Khrustalev
- RUDN University, 6 Miklukho-Maklaya St., Moscow 117198, Russian Federation
- Zelinsky Institute of Organic Chemistry of RAS, 4, 7 Leninsky Prospect, 119991 Moscow, Russian Federation
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C (Tribhuvan University) Biratnagar, Nepal
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11
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Mammadova GZ, Yakovleva ED, Erokhin PP, Grigoriev MS, Atioğlu Z, Azizova AN, Akkurt M, Bhattarai A. Crystal structure and Hirshfeld surface analysis of 10-hy-droxy-2-(4-meth-oxy-phen-yl)-3-oxo-2,3,3a,4,10,10a-hexa-hydro-1 H-9-thia-2-aza-cyclo-penta-[ b]fluorene-4-carb-oxy-lic acid dimethyl sulfoxide- d6 monosolvate. Acta Crystallogr E Crystallogr Commun 2023; 79:1127-1131. [PMID: 38313123 PMCID: PMC10833415 DOI: 10.1107/s2056989023009635] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2023] [Accepted: 11/03/2023] [Indexed: 02/06/2024]
Abstract
In the title compound, C22H19NO5S·C2D6OS, the central six-membered ring has a slightly distorted boat conformation, while the fused pyrrolidine ring adopts an envelope conformation. These conformations are stabilized by O-H⋯O hydrogen bonds between the main compound and solvent mol-ecules. In addition, intra-molecular C-H⋯O hydrogen bonds in the main mol-ecule form two S(6) rings. Mol-ecules are connected by pairs of inter-molecular C-H⋯O hydrogen bonds, forming dimers with a R 2 2(8) motif. These dimers form a three-dimensional network through O-H⋯O, O-H⋯S and C-H⋯O hydrogen bonds with each other directly and through solvent mol-ecules. In addition, weak π-π stacking inter-actions [centroid-to-centroid distances = 3.9937 (10) and 3.9936 (10) Å, slippages of 2.034 and 1.681 Å] are observed. The inter-molecular contacts were qu-anti-fied using Hirshfeld surface analysis and two-dimensional fingerprint plots, revealing the relative contributions of the contacts to the crystal packing to be H⋯H 41.7%, O⋯H/H⋯O 27.7%, C⋯H/H⋯C 17.0%, and S⋯H/H⋯S 7.5%.
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Affiliation(s)
- Gunay Z. Mammadova
- Organic Chemistry Department, Baku State University, Z. Xalilov Str. 23, Az 1148 Baku, Azerbaijan
| | - Elizaveta D. Yakovleva
- Peoples’ Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St., Moscow, 117198, Russian Federation
| | - Pavel P. Erokhin
- Peoples’ Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St., Moscow, 117198, Russian Federation
| | - Mikhail S. Grigoriev
- Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences, Leninskiy prospect 31-4, Moscow 119071, Russian Federation
| | - Zeliha Atioğlu
- Department of Aircraft Electrics and Electronics, School of Applied Sciences, Cappadocia University, Mustafapaşa, 50420 Ürgüp, Nevşehir, Türkiye
| | - Asmet N. Azizova
- Department of Synthesis of Biologically Active Compounds, Scientific Research Center, Azerbaijan Medical University, Samed Vurgun St. 167, Az 1022 Baku, Azerbaijan
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C (Tribhuvan University), Biratnagar, Nepal
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12
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Yalazan H, Koç D, Aydın Kose F, Fandaklı S, Tüzün B, Akgül Mİ, Sadeghian N, Taslimi P, Kantekin H. Design, syntheses, theoretical calculations, MM-GBSA, potential anti-cancer and enzyme activities of novel Schiff base compounds. J Biomol Struct Dyn 2023; 42:13100-13113. [PMID: 37921706 DOI: 10.1080/07391102.2023.2274972] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2023] [Accepted: 10/18/2023] [Indexed: 11/04/2023]
Abstract
In this study, new Schiff base compounds (SB-F-OH, SB-Cl-OH and SB-Br-OH) were derived from chalcone-derived amine compounds containing halogen groups and 4-hydroxybenzaldehyde. Also, their phthalonitrile compounds (SB-F-CN, SB-Cl-CN and SB-Br-CN) have been synthesized. The structures of these compounds were elucidated by NMR, FT-IR and Mass spectroscopic methods. The quantum chemical parameters were calculated at B3LYP/6-31++g(d,p), HF/6-31++g(d,p) and M062X/6-31++g(d,p) levels. As the biological application of the synthesized compounds, (i) their inhibition properties of the synthesized compounds on Acetylcholinesterase (AChE) and Butyrylcholinesterase (BChE) metabolic enzymes were investigated, and their potential anticancer activities against neuroblastoma (NB; SH-SY5Y) and healthy fibroblast (NIH-3T3) cell lines were determined by in vitro assays. All compounds showed inhibition at nanomolar level with the Ki values in the range of 97.86 ± 30.51-516.82 ± 31.42 nM for AChE, 33.21 ± 4.45-78.50 ± 8.91 nM for BChE, respectively. It has been determined that all tested compounds have a remarkable cytotoxic effect against SH-SY5Y, and IC50 values were significantly lower than NIH-3T3 cells. The lowest IC50 value was observed in SB-Cl-OH (7.48 ± 0.86 µM) and SB-Cl-CN (7.31 ± 0.69 µM). The molecular docking of the molecules was also investigated using crystal structure of AChE enzyme protein (PDB ID: 4M0E), crystal structure of BChE protein (PDB ID: 6R6V) and SH-SY5Y cancer protein (PDB ID: 2F3F, 3PBL and 5WIV). The ADME properties of the compounds were investigated. MM/GBSA method is calculated binding free energy. Afterwards, ADME/T analysis was performed to examine the some properties of the molecules.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Halise Yalazan
- Department of Chemistry, Faculty of Sciences, Karadeniz Technical University, Trabzon, Türkiye
| | - Damla Koç
- Department of Chemistry, Faculty of Sciences, Erciyes University, Kayseri, Türkiye
| | - Fadime Aydın Kose
- Department of Biochemistry, Faculty of Pharmacy, Izmir Katip Celebi University, İzmir, Türkiye
| | - Seda Fandaklı
- Department of Chemistry, Faculty of Sciences, Karadeniz Technical University, Trabzon, Türkiye
| | - Burak Tüzün
- Plant and Animal Production Department, Technical Sciences Vocational School of Sivas, Sivas Cumhuriyet University, Sivas, Türkiye
| | - Muhammed İsmail Akgül
- Department of Biochemistry, Faculty of Pharmacy, Izmir Katip Celebi University, İzmir, Türkiye
| | - Nastaran Sadeghian
- Department of Biotechnology, Faculty of Sciences, Bartin University, Bartin, Türkiye
| | - Parham Taslimi
- Department of Biotechnology, Faculty of Sciences, Bartin University, Bartin, Türkiye
| | - Halit Kantekin
- Department of Chemistry, Faculty of Sciences, Karadeniz Technical University, Trabzon, Türkiye
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Guseinov FI, Ovsyannikov VO, Sokolovskiy PV, Sebyakin YL, Samigullina AI, Akkurt M, Çelikesir ST, Bhattarai A. Synthesis, crystal structure and Hirshfeld surface analysis of 3-(4-fluoro-phen-yl)-2-formyl-7-methyl-imidazo[1,2- a]pyridin-1-ium chloride monohydrate. Acta Crystallogr E Crystallogr Commun 2023; 79:899-904. [PMID: 37817960 PMCID: PMC10561212 DOI: 10.1107/s2056989023007272] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Accepted: 08/18/2023] [Indexed: 10/12/2023]
Abstract
In the title salt, C15H12FN2O+·Cl-·H2O, the imidazo[1,2-a]pyridin-1-ium ring system of the cation is almostly planar [maximum deviaition = -0.047 (2) Å for the ring C atom with the attached arene ring] and forms a dihedral angle of 61.81 (6)° with the plane of the fluoro-phenyl ring. In the crystal, water mol-ecules form an R 2 4(8) motif parallel to the (100) plane by bonding with the chloride ions via O-H⋯Cl hydrogen bonds. The cations are connected along the b axis via N-H⋯O hydrogen bonds involving the O atoms of water mol-ecules, and C-H⋯O, C-H⋯Cl and π-π inter-actions [centroid-to-centroid distance = 3.6195 (8) Å] form layers parallel to the (100) plane. Furthermore, these layers are connected via π-π inter-actions [centroid-to-centroid distance = 3.8051 (9) Å] that further consolidate the crystal structure.
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Affiliation(s)
- Firudin I. Guseinov
- Kosygin State University of Russia, 117997 Moscow, Russian Federation
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 119991 Moscow, Russian Federation
| | - Viacheslav O. Ovsyannikov
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 119991 Moscow, Russian Federation
- MIREA, Russian Technology University, Lomonosov Institute of Fine Chemical Technology, Moscow 119571, Russian Federation
| | - Pavel V. Sokolovskiy
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 119991 Moscow, Russian Federation
| | - Yurii L. Sebyakin
- MIREA, Russian Technology University, Lomonosov Institute of Fine Chemical Technology, Moscow 119571, Russian Federation
| | - Aida I. Samigullina
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 119991 Moscow, Russian Federation
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye
| | | | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C. (Tribhuvan University), Biratnagar, Nepal
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14
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Guseinov FI, Knyazev AV, Shuvalova EV, Kobrakov KI, Samigullina AI, Atioğlu Z, Akkurt M, Bhattarai A. Synthesis, crystal structure and Hirshfeld surface analysis of (2 Z,2' E)-2,2'-(3-meth-oxy-3-phenylpropane-1,2-diyl-idene)bis-(hydrazine-1-carbo-thioamide) di-methyl-formamide monosolvate. Acta Crystallogr E Crystallogr Commun 2023; 79:910-915. [PMID: 37817947 PMCID: PMC10561204 DOI: 10.1107/s2056989023007946] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2023] [Accepted: 09/11/2023] [Indexed: 10/12/2023]
Abstract
The overall mol-ecular configuration of the title compound, C12H16N6OS2·C3H7NO, is stabilized in the solid state by intra-molecular C-H⋯N, C-H⋯O, N-H⋯N and N-H⋯O inter-actions, forming S(5) ring motifs. In the crystal, mol-ecules are linked to each other and solvent di-methyl-formamide mol-ecules by N-H⋯S, N-H⋯O, C-H⋯O and C-H⋯S hydrogen bonds, forming a three dimensional network. The phenyl ring of the title compound is disordered over two sites with an occupancy ratio of 0.57 (4):0.43 (4). A Hirshfeld surface analysis was performed to qu-antify the contributions of the different inter-molecular inter-actions, indicating that the most important contributions to the crystal packing are from H⋯H (38.7%), S⋯H / H⋯S (24.0%), C⋯H / H⋯C (18.5%) and N⋯H / H⋯N (9.8%) inter-actions.
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Affiliation(s)
- Firudin I. Guseinov
- Kosygin State University of Russia, 117997 Moscow, Russian Federation
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 119991 Moscow, Russian Federation
| | - Aleksandr V. Knyazev
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 119991 Moscow, Russian Federation
- MIREA, Russian Technology University, Lomonosov Institute of Fine Chemical Technology, Moscow, 119571, Russian Federation
| | - Elena V. Shuvalova
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 119991 Moscow, Russian Federation
| | | | - Aida I. Samigullina
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 119991 Moscow, Russian Federation
| | - Zeliha Atioğlu
- Department of Aircraft Electrics and Electronics, School of Applied Sciences, Cappadocia University, Mustafapaşa, 50420 Ürgüp, Nevşehir, Türkiye
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C (Tribhuvan University), Biratnagar, Nepal
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15
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Huseynov EZ, Akkurt M, Brito I, Bhattarai A, Rzayev RM, Asadov KA, Maharramov AM. Crystal structure and Hirshfeld surface analysis of 1-(2-amino-4-methyl-1,3-thia-zol-5-yl)ethan-1-one. Acta Crystallogr E Crystallogr Commun 2023; 79:890-894. [PMID: 37817958 PMCID: PMC10561208 DOI: 10.1107/s2056989023007181] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2023] [Accepted: 08/16/2023] [Indexed: 10/12/2023]
Abstract
In the title compound, C6H8N2OS, all atoms except for the methyl H atoms are coplanar, with a maximum deviation of 0.026 (4) Å. In the crystal, pairs of mol-ecules are linked by N-H⋯N hydrogen bonds, forming R 2 2(8) ring motifs. Dimers are connected by N-H⋯O hydrogen bonds, forming layers parallel to the (102) plane. Consolidating the mol-ecular packing, these layers are connected by C-H⋯π inter-actions between the center of the 1,3-thia-zole ring and the H atom of the methyl group attached to it, as well as C=O⋯π inter-actions between the center of the 1,3-thia-zole ring and the O atom of the carboxyl group. According to a Hirshfeld surface study, H⋯H (37.6%), O⋯H/H⋯O (16.8%), S⋯H/H⋯S (15.4%), N⋯H/H⋯N (13.0%) and C⋯H/H⋯C (7.6%) inter-actions are the most significant contributors to the crystal packing.
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Affiliation(s)
- Elnur Z. Huseynov
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye
| | - Ivan Brito
- Departamento de Química, Facultad de Ciencias Básicas, Universidad de Antofagasta, Avenida Angamos 601, Casilla 170, Antofagasta 1240000, Chile
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C. (Tribhuvan University) Biratnagar, Nepal
| | - Rovnag M. Rzayev
- "Composite Materials" Scientific Research Center, Azerbaijan State Economic University (UNEC), H. Aliyev str. 135, Az1063, Baku, Azerbaijan
| | - Khammed A. Asadov
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Abel M. Maharramov
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, Az, 1148 Baku, Azerbaijan
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Aliyeva FS, Mammadova GZ, Akkurt M, Çelikesir ST, Bhattarai A. Synthesis, crystal structure and Hirshfeld surface analysis of 5-[2-(di-cyano-methyl-idene)hydrazin-1-yl]-2,4,6-tri-iodo-isophthalic acid ethanol monosolvate. Acta Crystallogr E Crystallogr Commun 2023; 79:795-799. [PMID: 37693669 PMCID: PMC10483556 DOI: 10.1107/s205698902300676x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2023] [Accepted: 08/02/2023] [Indexed: 09/12/2023]
Abstract
The title compound, C11H3I3N4O4·C2H6O, crystallizes in the triclinic P space group with one independent mol-ecule and one ethanol solvent mol-ecule in the asymmetric unit. The benzene ring and the methyl-carbonohydrazonoyl dicyanide group of the main mol-ecule makes a dihedral angle of 57.91 (16)°. In the crystal, O-H⋯O and N-H⋯O hydrogen bonds link pairs of mol-ecules, forming dimers with R 2 2(14) motifs. These dimers are connected by O-H⋯O hydrogen bonds into chains along the a-axis direction, forming R 2 2(16) ring motifs. Further O-H⋯O inter-actions involving the ethanol solvent mol-ecule connect the chains into a three-dimensional network. In addition, C-I⋯π inter-actions are observed. The inter-molecular inter-actions in the crystal structure were qu-anti-fied and analysed using Hirshfeld surface analysis.
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Affiliation(s)
- Fargana S. Aliyeva
- Excellence Center, Baku State University, Z. Xalilov Str. 23, Az 1148 Baku, Azerbaijan
| | - Gunay Z. Mammadova
- Organic Chemistry Department, Baku State University, Z. Xalilov Str. 23, Az 1148 Baku, Azerbaijan
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye
| | | | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C. (Tribhuvan University), Biratnagar, Nepal
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17
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Huseynov EZ, Akkurt M, Brito I, Bhattarai A, Naghiyev FN, Asadov KA, Maharramov AM. Crystal structure and Hirshfeld surface analysis of 2-amino-5-{(1 E)-1-[(carbamo-thioyl-amino)-imino]eth-yl}-4-methyl-1,3-thia-zol-3-ium chloride monohydrate. Acta Crystallogr E Crystallogr Commun 2023; 79:808-812. [PMID: 37693676 PMCID: PMC10483551 DOI: 10.1107/s2056989023007090] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Accepted: 08/11/2023] [Indexed: 09/12/2023]
Abstract
In the hydrated title salt, C7H12N5S2 +·Cl-·H2O, the asymmetric unit comprises one 2-amino-5-{(1E)-1-[(carbamo-thioyl-amino)-imino]-eth-yl}-4-methyl-1,3-thia-zol-3-ium cation, one chloride anion and one water mol-ecule of crystallization. The cation is nearly flat (r.m.s. deviation of non-H atoms is 0.0814 Å), with the largest deviation of 0.1484 (14) Å observed for one of the methyl C atoms. In the crystal, the cations are linked by O-H⋯Cl, N-H⋯Cl, N-H⋯O, N-H⋯S and C-H⋯S hydrogen bonds, forming a tri-periodic network. The most important contributions to the crystal packing are from H⋯H (35.4%), S⋯H/H⋯S (24.4%), N⋯H/H⋯N (8.7%), Cl⋯H/H⋯Cl (8.2%) and C⋯H/H⋯C (7.7%) inter-actions.
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Affiliation(s)
- Elnur Z. Huseynov
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye
| | - Ivan Brito
- Departamento de Química, Facultad de Ciencias Básicas, Universidad de Antofagasta, Avenida Angamos 601, Casilla 170, Antofagasta 1240000, Chile
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C (Tribhuvan University) Biratnagar, Nepal
| | - Farid N. Naghiyev
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Khammed A. Asadov
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Abel M. Maharramov
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, Az, 1148 Baku, Azerbaijan
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Mammadova GZ, Mertsalov DF, Shchevnikov DM, Grigoriev MS, Akkurt M, Yıldırım SÖ, Bhattarai A. Crystal structures and Hirshfeld surface analyses of N, N-di-methyl-acetamide-1-(dimethyl-λ 4-aza-nyl-idene)ethan-1-ol tribromide (1/1), N, N-di-methyl-acetamide-1-(dimethyl-λ 4-aza-nyl-idene)ethan-1-ol di-bromido-iodate (1/1) and N, N-di-methyl-acetamide-1-(dimethyl-λ 4-aza-nyl-idene)ethan-1-ol di-chlorido-iodate (1/1). Acta Crystallogr E Crystallogr Commun 2023; 79:690-697. [PMID: 37601404 PMCID: PMC10439411 DOI: 10.1107/s2056989023005509] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Accepted: 06/22/2023] [Indexed: 08/22/2023]
Abstract
In the title compounds, N,N-di-methyl-acetamide-1-(dimethyl-λ4-aza-nyl-idene)ethan-1-ol tribromide (1/1), C4H9NO·C4H10NO+·Br3 - or [(C4H9NO)·(C4H10NO)](Br3), (I), N,N-di-methyl-acetamide-1-(dimethyl-λ4-aza-nyl-idene)ethan-1-ol di-bromido-iodate (1/1), C4H9NO·C4H10NO+·Br2I- or [(C4H9NO)·(C4H10NO)](Br2I), (II), and N,N-di-methyl-acetamide-1-(dimethyl-λ4-aza-nyl-idene)ethan-1-ol di-chlorido-iodate (1/1), C4H9NO·C4H10NO+·Cl2I- or [(C4H9NO)·(C4H10NO)]·(Cl2I), (III), all the anions are almost linear in geometry and all the cations, except for the methyl H atoms, are essentially planar. In the crystal structure of (I), the cations are linked by pairs of C-H⋯O hydrogen bonds, forming inversion dimers with an R 2 2(8) ring motif. These dimers also exhibit O-H⋯O hydrogen bonding. Dimerized cation pairs and anions are arranged in columns along the a axis. In the crystal of (II), the cations are linked by pairs of O-H⋯O and C-H⋯O hydrogen bonds, forming an R 4 4(14) ring motif. These groups of cations and the anions form individual columns along the a axis and jointly reside in planes roughly parallel to (011). In the crystal of (III), cations and anions also form columns parallel to the a axis, resulting in layers parallel to the (020) plane. Furthermore, the crystal structures of (I), (II) and (III) are consolidated by strong halogen (Br and/or I and/or Cl)⋯H and weak van der Waals inter-actions. In addition to the structural evaluation, a Hirshfeld surface analysis was carried out.
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Affiliation(s)
- Gunay Z. Mammadova
- Organic Chemistry Department, Baku State University, Z. Xalilov Str. 23, Az 1148 Baku, Azerbaijan
| | - Dmitriy F. Mertsalov
- Peoples’ Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St., Moscow 117198, Russian Federation
| | - Dmitriy M. Shchevnikov
- Peoples’ Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St., Moscow 117198, Russian Federation
| | - Mikhail S. Grigoriev
- Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences, Leninsky pr. 31, bld. 4, Moscow 119071, Russian Federation
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye
| | - Sema Öztürk Yıldırım
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye
- Department of Physics, Faculty of Science, Eskisehir Technical University, Yunus Emre Campus, 26470 Eskisehir, Türkiye
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C., Tribhuvan University, Biratnagar, Nepal
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Azizova AN, Mammadova GZ, Çelikesir ST, Akkurt M, Bhattarai A. Crystal structure and Hirshfeld surface analysis of bis-{( Z)- N'-[( E)-(furan-2-yl)methyl-idene]carbamo-hydrazono-thio-ato}nickel(II) methanol disolvate. Acta Crystallogr E Crystallogr Commun 2023; 79:669-673. [PMID: 37601570 PMCID: PMC10439423 DOI: 10.1107/s2056989023005182] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2023] [Accepted: 06/10/2023] [Indexed: 08/22/2023]
Abstract
In the title complex, [Ni(C6H6N3OS)2]·2CH3OH, the NiII atom is coordinated by the S and N atoms of two N'-[(Z)-(furan-2-yl)methyl-idene]carbamohydrazono-thioic acid ligands in a distorted square-planar geometry. The two mutual ligands bound to NiII are also connected by C-H⋯S inter-actions, while the H atoms of the NH2 group of the ligands form R 4 4(8) motifs with the O atoms of the solvent ethyl alcohol mol-ecules. At the same time, the OH groups of the solvent ethyl alcohol mol-ecules form parallel layers to the (011) plane by the O-H⋯N inter-actions with the ligand N atom that is not bonded to the NiII atom.. The layers are connected by van der Waals inter-actions. A Hirshfeld surface analysis indicates that the most important contacts are H⋯H (37.7%), C⋯H/H⋯C (14.6%), O⋯H/H⋯O (11.5%) and S⋯H/H⋯S (10.6%).
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Affiliation(s)
- Asmet N. Azizova
- Department of Synthesis of Biologically Active Compounds, Scientific Research Center, Azerbaijan Medical University, Samed Vurgun St. 167, Az 1022 Baku, Azerbaijan
| | - Gunay Z. Mammadova
- Organic Chemistry Department, Baku State University, Z. Xalilov Str. 23, Az 1148 Baku, Azerbaijan
| | | | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C (Tribhuvan University), Biratnagar, Nepal
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Mammadova GZ, Annadurdyyeva S, Burkin GM, Khrustalev VN, Akkurt M, Yıldırım SÖ, Bhattarai A. Crystal structure and Hirshfeld surface analysis of N-[2-(5-methyl-furan-2-yl)phen-yl]-3-nitro- N-[(3-nitro-phen-yl)sulfon-yl]benzene-sulfonamide. Acta Crystallogr E Crystallogr Commun 2023; 79:499-503. [PMID: 37151836 PMCID: PMC10162090 DOI: 10.1107/s2056989023003523] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2023] [Accepted: 04/18/2023] [Indexed: 05/09/2023]
Abstract
In the title compound, C23H17N3O9S2, C-H⋯O hydrogen bonds link adjacent mol-ecules in a three-dimensional network, while π-π stacking inter-actions, with centroid-centroid distances of 3.8745 (9) Å, between the furan and an arene ring of one of the two (3-nitro-phen-yl)sulfonyl groups, result in chains parallel to the a axis. The Hirshfeld surface analysis indicates that O⋯H/H⋯O (40.1%), H⋯H (27.5%) and C⋯H/H⋯C (12.4%) inter-actions are the most significant contributors to the crystal packing.
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Affiliation(s)
- Gunay Z. Mammadova
- Excellence Center, Baku State University, Z. Xalilov Str. 23, Az 1148 Baku, Azerbaijan
| | - Selbi Annadurdyyeva
- Peoples’ Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St., Moscow 117198, Russian Federation
| | - Gleb M. Burkin
- Peoples’ Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St., Moscow 117198, Russian Federation
| | - Victor N. Khrustalev
- Peoples’ Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St., Moscow 117198, Russian Federation
- Zelinsky Institute of Organic Chemistry of RAS, 4, 7 Leninsky Prospect, 119991 Moscow, Russian Federation
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye
| | - Sema Öztürk Yıldırım
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye
- Department of Physics, Faculty of Science, Eskisehir Technical University, Yunus Emre Campus, 26470 Eskisehir, Türkiye
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C. (Tribhuvan University), Biratnagar, Nepal
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21
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Yıldırım SÖ, Akkurt M, Ershova AA, Grigoriev MS, Rocha BGM, Bhattarai A. Crystal structure and Hirshfeld surface analysis of (2 2 RS,2 3 SR,2 5 RS,2 6 SR)-2 3,2 5,5-trimethyl-2 1-(2,2,2-tri-fluoro-acet-yl)-5-aza-2(2,6)-piperidina-1,3(2,5)-di-furana-cyclo-hexa-phan-2 4-one. Acta Crystallogr E Crystallogr Commun 2023; 79:292-296. [PMID: 37057003 PMCID: PMC10088306 DOI: 10.1107/s2056989023001986] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2023] [Accepted: 03/02/2023] [Indexed: 03/12/2023]
Abstract
The title compound, C20H21F3N2O4, features a main twelve-membered difuryl ring with which the furan rings make dihedral angles of 76.14 (5) and 33.81 (5)°. The dihedral angle between the furan rings is 42.55 (7)°. The six-membered nitro-gen heterocycle has a twist-boat conformation. In the crystal, pairs of mol-ecules are connected by inter-molecular C-H⋯O inter-actions, generating an R 2 2(14) ring motif. These pairs of mol-ecules form zigzag chains along the a-axis direction by means of C-H⋯F inter-actions. Furthermore, C-H⋯π and C-F⋯π inter-actions link the mol-ecules into chains along the b-axis direction, forming sheets parallel to the (001) plane. These sheets are also connected by van der Waals inter-actions.
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Affiliation(s)
- Sema Öztürk Yıldırım
- Department of Physics, Faculty of Science, Eskisehir Technical University, Yunus Emre Campus 26470 Eskisehir, Türkiye
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye
| | - Anastasia A Ershova
- Peoples' Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St., Moscow, 117198, Russian Federation
| | - Mikhail S Grigoriev
- Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences (IPCE RAS), 31 Bldg 4, Leninsky prosp., Moscow, 119071, Russian Federation
| | - Bruno G M Rocha
- Centro de Química Estrutural, Institute of Molecular Sciences, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisboa, Portugal
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C (Tribhuvan University), Biratnagar, Nepal
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22
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Synthesis, Spectroscopic Characterization, Antibacterial Activity, and Computational Studies of Novel Pyridazinone Derivatives. Molecules 2023; 28:molecules28020678. [PMID: 36677736 PMCID: PMC9861222 DOI: 10.3390/molecules28020678] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2022] [Revised: 12/26/2022] [Accepted: 01/05/2023] [Indexed: 01/11/2023] Open
Abstract
In this work, a novel series of pyridazinone derivatives (3-17) were synthesized and characterized by NMR (1H and 13C), FT-IR spectroscopies, and ESI-MS methods. All synthesized compounds were screened for their antibacterial activities against Staphylococcus aureus (Methicillin-resistant), Escherichia coli, Salmonella typhimurium, Pseudomonas aeruginosa, and Acinetobacter baumannii. Among the series, compounds 7 and 13 were found to be active against S. aureus (MRSA), P. aeruginosa, and A. baumannii with the lowest MIC value range of 3.74-8.92 µM. Afterwards, DFT calculations of B3LYP/6-31++G(d,p) level were carried out to investigate geometry structures, frontier molecular orbital, molecular electrostatic potential maps, and gap energies of the synthesized compounds. In addition, the activities of these compounds against various bacterial proteins were compared with molecular-docking calculations. Finally, ADMET studies were performed to investigate the possibility of using of the target compounds as drugs.
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23
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Improvement of photochemical and enzyme inhibition properties of new BODIPY compound by conjugation with cisplatin. Polyhedron 2022. [DOI: 10.1016/j.poly.2022.116042] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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24
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Mahmudov I, Atioğlu Z, Akkurt M, Abdullayev Y, Sujayev A, Bhattarai A. Crystal structure and Hirshfeld surface analysis of 2-(4-amino-6-phenyl-1,2,5,6-tetra-hydro-1,3,5-triazin-2-yl-idene)malono-nitrile di-methyl-formamide hemisolvate. Acta Crystallogr E Crystallogr Commun 2022; 78:779-784. [PMID: 35974821 PMCID: PMC9361369 DOI: 10.1107/s2056989022006910] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Accepted: 07/06/2022] [Indexed: 06/15/2023]
Abstract
The title compound, 2C12H10N6·C3H7NO, crystallizes as a racemate in the monoclinic P21/c space group with two independent mol-ecules (I and II) and one di-methyl-formamide solvent mol-ecule in the asymmetric unit. Both mol-ecules (I and II) have chiral centers at the carbon atoms where the triazine rings of mol-ecules I and II are attached to the phenyl ring. In the crystal, mol-ecules I and II are linked by inter-molecular N-H⋯N, N-H⋯O and C-H⋯N hydrogen bonds through the solvent di-methyl-formamide mol-ecule into layers parallel to (001). In addition, C-H⋯π inter-actions also connect adjacent mol-ecules into layers parallel to (001). The stability of the mol-ecular packing is ensured by van der Waals inter-actions between the layers. The Hirshfeld surface analysis indicates that N⋯H/H⋯N (38.3% for I; 35.0% for II), H⋯H (28.2% for I; 27.0% for II) and C⋯H/H⋯C (23.4% for I; 26.3% for II) inter-actions are the most significant contributors to the crystal packing.
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Affiliation(s)
- Ibadulla Mahmudov
- Institute of Chemistry of Additives, Azerbaijan National Academy of Sciences, 1029 Baku, Azerbaijan
| | - Zeliha Atioğlu
- Department of Aircraft Electrics and Electronics, School of Applied Sciences, Cappadocia University, Mustafapaşa, 50420 Ürgüp, Nevşehir, Turkey
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Yusif Abdullayev
- Institute of Petrochemical Processes, Azerbaijan National Academy of Sciences, 1025 Baku, Azerbaijan
- Baku Engineering University, 0101 Baku, Azerbaijan
| | - Afsun Sujayev
- Institute of Chemistry of Additives, Azerbaijan National Academy of Sciences, 1029 Baku, Azerbaijan
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C (Tribhuvan University) Biratnagar, Nepal
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25
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Al-Janabi IAS, Yavuz SÇ, Köprü S, Tapera M, Kekeçmuhammed H, Akkoç S, Tüzün B, Patat Ş, Sarıpınar E. Antiproliferative activity and molecular docking studies of new 4-oxothiazolidin-5-ylidene acetate derivatives containing guanylhydrazone moiety. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.132627] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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26
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Bhat MA, Tüzün B, Alsaif NA, Ali Khan A, Naglah AM. Synthesis, characterization, molecular modeling against EGFR target and ADME/T analysis of novel purine derivatives of sulfonamides. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.132600] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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27
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Synthesis, characterization and bioactivity of novel 8-hydroxyquinoline derivatives: Experimental, molecular docking, DFT and POM analyses. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.132688] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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28
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Khalilov AN, Khrustalev VN, Tereshina TA, Akkurt M, Rzayev RM, Akobirshoeva AA, Mamedov İG. Crystal structure and Hirshfeld surface analysis of 1-( tert-butyl-amino)-3-mesitylpropan-2-ol hemi-hydrate. Acta Crystallogr E Crystallogr Commun 2022; 78:525-529. [PMID: 35547793 PMCID: PMC9069515 DOI: 10.1107/s2056989022004297] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2022] [Accepted: 04/21/2022] [Indexed: 11/24/2022]
Abstract
The title compound, 2C16H27NO·H2O, crystallizes in the monoclinic P21/c space group with two independent mol-ecules (A and B) in the asymmetric unit. In the crystal, mol-ecules A and B are linked through the water mol-ecules by inter-molecular O-H⋯O and O-H⋯N hydrogen bonds, producing chains along the b-axis direction. These chains are linked with neighboring chains parallel to the (103) plane via C-H⋯π inter-actions, generating ribbons along the b-axis direction. The stability of the mol-ecular packaging is ensured by van der Waals inter-actions between the ribbons. According to the Hirshfeld surface study, H⋯H inter-actions are the most significant contributors to the crystal packing (80.3% for mol-ecule A and 84.8% for mol-ecule B).
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Affiliation(s)
- Ali N. Khalilov
- "Composite Materials" Scientific Research Center, Azerbaijan State Economic University (UNEC), H. Aliyev str. 135, Az 1063, Baku, Azerbaijan
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, Az 1148, Baku, Azerbaijan
| | - Victor N. Khrustalev
- Peoples’ Friendship University of Russia (RUDN University), Miklukho-Maklay St. 6, Moscow, 117198, Russian Federation
- N. D. Zelinsky Institute of Organic Chemistry RAS, Leninsky Prosp. 47, Moscow, 119991, Russian Federation
| | - Tatiana A. Tereshina
- Peoples’ Friendship University of Russia (RUDN University), Miklukho-Maklay St. 6, Moscow, 117198, Russian Federation
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Rovnag M. Rzayev
- "Composite Materials" Scientific Research Center, Azerbaijan State Economic University (UNEC), H. Aliyev str. 135, Az 1063, Baku, Azerbaijan
| | - Anzurat A. Akobirshoeva
- Acad. Sci. Republ. Tadzhikistan, Kh. Yu. Yusufbekov Pamir Biol Inst, 1 Kholdorova St, Khorog 736002, Gbao, Tajikistan
| | - İbrahim G. Mamedov
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, Az 1148, Baku, Azerbaijan
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29
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Nikitina EV, Çelikesir ST, Akkurt M, Petkevich SK, Akishina EA, Khrustalev VN, Mlowe S. Crystal structure and Hirshfeld surface analysis of 5-(5-phenyl-1,2-oxazol-3-yl)-1,3,4-thia-diazol-2-amine. Acta Crystallogr E Crystallogr Commun 2022; 78:453-457. [PMID: 35492272 PMCID: PMC8983972 DOI: 10.1107/s2056989022003450] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2022] [Accepted: 03/27/2022] [Indexed: 11/23/2022]
Abstract
The title compound, C11H8N4OS, crystallizes with two independent mol-ecules in the asymmetric unit. In the crystal, the N-H⋯N and C-H⋯N hydrogen bonds connect the mol-ecules, generating double layers parallel to the (001) plane. The layers are joined by C-H⋯π inter-actions to form a three-dimensional supra-molecular structure.
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Affiliation(s)
- Evgeniya V. Nikitina
- Department of Organic Chemistry, Peoples’ Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St., 117198, Moscow, Russian Federation
| | | | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Sergey K. Petkevich
- Laboratory of the Chemistry of Heterocyclic Compounds, Institute of Physical Organic Chemistry, National Academy of Sciences of Belarus, 13, Surganova Str., 220072, Minsk, Belarus
| | - Ekaterina A. Akishina
- Laboratory of the Chemistry of Heterocyclic Compounds, Institute of Physical Organic Chemistry, National Academy of Sciences of Belarus, 13, Surganova Str., 220072, Minsk, Belarus
| | - Victor N. Khrustalev
- Department of Organic Chemistry, Peoples’ Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St., 117198, Moscow, Russian Federation
- N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 47 Leninsky Av., Moscow, Russian Federation
| | - Sixberth Mlowe
- University of Dar es Salaam, Dar es Salaam University College of Education, Department of Chemistry, PO Box 2329, Dar es Salaam, Tanzania
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30
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Mamedov IG, Khrustalev VN, Akkurt M, Novikov AP, Asgarova AR, Aliyeva KN, Akobirshoeva AA. Crystal structure and Hirshfeld surface analysis of 5-acetyl-2-amino-4-(4-bromo-phen-yl)-6-oxo-1-phenyl-1,4,5,6-tetra-hydro-pyridine-3-carbo-nitrile. Acta Crystallogr E Crystallogr Commun 2022; 78:291-296. [PMID: 35371550 PMCID: PMC8900508 DOI: 10.1107/s2056989022001232] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2022] [Accepted: 02/01/2022] [Indexed: 11/10/2022]
Abstract
The crystal structure of the title compound, C20H16BrN3O2, was determined using an inversion twin. Its asymmetric unit comprises two crystallographically independent mol-ecules (A and B) being the stereoisomers. Both mol-ecules are linked by pairs of N-H⋯O hydrogen bonds, forming a dimer with an R 2 2(16) ring motif. The dimers are connected by further N-H⋯O and N-H⋯N hydrogen bonds, forming chains along the c-axis direction·C-Br⋯π inter-actions between these chains contribute to the stabilization of the mol-ecular packing. Hirshfeld surface analysis showed that the most important contributions to the crystal packing are from H⋯H, C⋯H/H⋯C, O⋯H/H⋯O, Br⋯H/H⋯Br and N⋯H/H⋯N inter-actions.
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Affiliation(s)
- Ibrahim G. Mamedov
- Department of Chemistry, Baku State University, 23 Z. Khalilov str., Az, 1148 Baku, Azerbaijan
| | - Victor N. Khrustalev
- Peoples’ Friendship University of Russia (RUDN University), 6 Miklukho-Maklay str., Moscow, 117198, Russian Federation
- N. D. Zelinsky Institute of Organic Chemistry RAS, Leninsky Prosp. 47, 119991 Moscow, Russian Federation
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Anton P. Novikov
- Peoples’ Friendship University of Russia (RUDN University), 6 Miklukho-Maklay str., Moscow, 117198, Russian Federation
| | - Ayten R. Asgarova
- Department of Chemistry, Baku State University, 23 Z. Khalilov str., Az, 1148 Baku, Azerbaijan
| | - Khatira N. Aliyeva
- Department of Chemistry, Baku State University, 23 Z. Khalilov str., Az, 1148 Baku, Azerbaijan
| | - Anzurat A. Akobirshoeva
- Acad. Sci. Republ. Tajikistan, Kh. Yu. Yusufbekov Pamir Biol. Inst., 1 Kholdorova str., 736002, Khorog, Gbao, Tajikistan
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31
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Asadov KA, Khrustalev VN, Dobrokhotova EV, Akkurt M, Huseynova AT, Akobirshoeva AA, Huseynov EZ. Crystal structure and Hirshfeld surface analysis of 2-amino-4-(4-meth-oxy-phen-yl)-6-oxo-1-phenyl-1,4,5,6-tetra-hydro-pyridine-3-carbo-nitrile. Acta Crystallogr E Crystallogr Commun 2022; 78:330-335. [PMID: 35371539 PMCID: PMC8900505 DOI: 10.1107/s205698902200175x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2022] [Accepted: 02/15/2022] [Indexed: 11/16/2022]
Abstract
The central tetra-hydro-pyridine ring of the title compound, C19H17N3O2, adopts a screw-boat conformation. In the crystal, strong C-H⋯O and N-H⋯N hydrogen bonds form dimers with R 2 2(14) and R 2 2(12) ring motifs, respectively, between consecutive mol-ecules along the c-axis direction. Inter-molecular N-H⋯O and C-H⋯O hydrogen bonds connect these dimers, forming a three-dimensional network. C-H⋯π inter-actions and π-π stacking inter-actions contribute to the stabilization of the mol-ecular packing. A Hirshfeld surface analysis indicates that the contributions from the most prevalent inter-actions are H⋯H (47.1%), C⋯H/H⋯C (20.9%), O⋯H/H⋯O (15.3%) and N⋯H/H⋯N (11.4%).
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Affiliation(s)
- Khammed A. Asadov
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Victor N. Khrustalev
- Peoples’ Friendship University of Russia (RUDN University), Miklukho-Maklay St. 6, Moscow, 117198, Russian Federation
- N. D. Zelinsky Institute of Organic Chemistry RAS, Leninsky Prosp. 47, Moscow, 119991, Russian Federation
| | - Ekaterina V. Dobrokhotova
- Peoples’ Friendship University of Russia (RUDN University), Miklukho-Maklay St. 6, Moscow, 117198, Russian Federation
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Afet T. Huseynova
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Anzurat A. Akobirshoeva
- Acad Sci Republ Tadzhikistan, Kh. Yu. Yusufbekov Pamir Biol. Inst., 1 Kholdorova St, Khorog 736002, Gbao, Tajikistan
| | - Elnur Z. Huseynov
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, Az, 1148 Baku, Azerbaijan
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